Wall clock time and date at job start Tue Mar 31 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47229 * 2 1 4 4 N 1.46493 * 109.46878 * 119.99913 * 2 1 3 5 5 C 1.46498 * 120.00127 * 299.99864 * 4 2 1 6 6 C 1.50697 * 109.47354 * 270.00034 * 5 4 2 7 7 H 1.08009 * 119.99939 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00447 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99800 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00536 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47169 * 60.00263 * 10 8 6 12 12 H 1.48497 * 109.47442 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47258 * 300.00282 * 10 8 6 14 14 C 1.34780 * 119.99761 * 120.00129 * 4 2 1 15 15 O 1.21283 * 119.99795 * 179.97438 * 14 4 2 16 16 C 1.50697 * 120.00131 * 359.97438 * 14 4 2 17 17 N 1.46903 * 109.47020 * 173.87603 * 16 14 4 18 18 C 1.48528 * 111.00168 * 305.75539 * 17 16 14 19 19 H 1.09003 * 110.66909 * 41.28911 * 18 17 16 20 20 C 1.52992 * 110.81170 * 278.21858 * 18 17 16 21 21 C 1.54947 * 103.22364 * 159.71958 * 18 17 16 22 22 C 1.54594 * 102.92175 * 322.58371 * 21 18 17 23 23 C 1.47904 * 110.99618 * 63.15345 * 17 16 14 24 24 H 1.08998 * 110.08060 * 333.59754 * 23 17 16 25 25 C 1.53002 * 109.91802 * 94.79994 * 23 17 16 26 26 H 1.08996 * 109.47316 * 300.00008 * 1 2 3 27 27 H 1.09008 * 109.47021 * 60.00227 * 1 2 3 28 28 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47198 * 240.00082 * 2 1 3 30 30 H 1.08996 * 109.47243 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46481 * 300.00049 * 3 2 1 32 32 H 1.08996 * 109.46978 * 59.99785 * 3 2 1 33 33 H 1.09000 * 109.46953 * 30.00012 * 5 4 2 34 34 H 1.09005 * 109.46842 * 150.00160 * 5 4 2 35 35 H 0.96998 * 119.99951 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.46750 * 53.88328 * 16 14 4 37 37 H 1.08994 * 109.47378 * 293.87991 * 16 14 4 38 38 H 1.09004 * 109.47378 * 306.04612 * 20 18 17 39 39 H 1.09005 * 109.46996 * 66.04681 * 20 18 17 40 40 H 1.08998 * 109.47409 * 186.04401 * 20 18 17 41 41 H 1.09004 * 110.71701 * 204.22827 * 21 18 17 42 42 H 1.08996 * 110.87672 * 81.01532 * 21 18 17 43 43 H 1.08996 * 110.30788 * 263.04176 * 22 21 18 44 44 H 1.08993 * 110.39066 * 140.91742 * 22 21 18 45 45 H 1.09003 * 109.47030 * 179.04163 * 25 23 17 46 46 H 1.08999 * 109.46687 * 59.04511 * 25 23 17 47 47 H 1.08994 * 109.47380 * 299.04135 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1961 5 6 1.6643 -0.1900 2.5267 6 6 2.7031 0.8018 2.9830 7 1 3.5427 1.0363 2.3454 8 6 2.5811 1.4108 4.2139 9 7 1.5583 1.1257 4.9902 10 14 3.8682 2.6409 4.7792 11 1 3.9234 3.7749 3.8219 12 1 3.5095 3.1481 6.1280 13 1 5.1953 1.9772 4.8373 14 6 2.7931 -1.7864 1.0725 15 8 3.1977 -2.3579 2.0628 16 6 3.1567 -2.3016 -0.2962 17 7 4.1179 -3.4047 -0.1648 18 6 5.2968 -2.9908 0.6383 19 1 4.9879 -2.3890 1.4931 20 6 6.3006 -2.2243 -0.2250 21 6 5.8972 -4.3398 1.1078 22 6 4.6422 -5.1992 1.3845 23 6 3.5180 -4.5469 0.5586 24 1 2.7263 -4.1963 1.2207 25 6 2.9519 -5.5576 -0.4409 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 0.6904 0.2975 2.4843 34 1 1.6237 -1.0226 3.2291 35 1 1.4723 1.5544 5.8560 36 1 3.6045 -1.4973 -0.8800 37 1 2.2590 -2.6599 -0.7999 38 1 6.5570 -2.8209 -1.1005 39 1 5.8586 -1.2807 -0.5451 40 1 7.2015 -2.0251 0.3554 41 1 6.4814 -4.2058 2.0183 42 1 6.5062 -4.7881 0.3229 43 1 4.3943 -5.1760 2.4457 44 1 4.8053 -6.2259 1.0571 45 1 2.5271 -6.4037 0.0992 46 1 3.7504 -5.9079 -1.0950 47 1 2.1750 -5.0812 -1.0388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530817469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:02 Heat of formation + Delta-G solvation = -53.568961 kcal Electronic energy + Delta-G solvation = -24481.613768 eV Core-core repulsion = 21277.456728 eV Total energy + Delta-G solvation = -3204.157040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64046 -39.44682 -37.37165 -34.98379 -33.48843 -33.30680 -32.42111 -29.86921 -29.13612 -28.02037 -26.95923 -24.74888 -24.57237 -22.73027 -21.45029 -21.18223 -19.44387 -18.61490 -18.18903 -17.18582 -16.78400 -16.32550 -16.17124 -15.85720 -15.32039 -14.86328 -14.80822 -14.64208 -14.16303 -13.99574 -13.81496 -13.59098 -13.36364 -13.28720 -13.02274 -12.89818 -12.84514 -12.76428 -12.67270 -12.52300 -12.30016 -12.23210 -12.10272 -11.88237 -11.66869 -11.61901 -11.55098 -11.47906 -11.20154 -11.02194 -10.63060 -9.37594 -9.19725 -8.21249 -6.33313 1.32736 1.36300 1.43252 1.80917 2.30217 2.45529 2.96529 3.08176 3.68241 3.74118 3.83005 3.98619 4.17977 4.26828 4.32260 4.34905 4.41257 4.49717 4.54921 4.59105 4.72186 4.78923 4.83863 4.86247 4.87658 4.90639 4.99892 5.01623 5.03864 5.06561 5.11235 5.20855 5.21174 5.23803 5.30875 5.41661 5.44528 5.50547 5.56057 5.63035 5.89196 5.97832 6.03667 6.10061 6.72616 6.84988 7.30083 7.50235 8.85564 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016047 B = 0.006029 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.507535 B = 4642.960507 C = 5323.392199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 C -0.151 4.151 4 N -0.596 5.596 5 C 0.267 3.733 6 C -0.522 4.522 7 H 0.052 0.948 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.260 1.260 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.465 3.535 15 O -0.581 6.581 16 C 0.034 3.966 17 N -0.475 5.475 18 C 0.033 3.967 19 H 0.048 0.952 20 C -0.126 4.126 21 C -0.108 4.108 22 C -0.118 4.118 23 C 0.053 3.947 24 H 0.034 0.966 25 C -0.124 4.124 26 H 0.036 0.964 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.021 0.979 34 H -0.012 1.012 35 H 0.264 0.736 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.040 0.960 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.434 -7.579 -16.273 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 C -0.209 4.209 4 N -0.328 5.328 5 C 0.145 3.855 6 C -0.561 4.561 7 H 0.070 0.930 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.185 1.185 12 H -0.206 1.206 13 H -0.206 1.206 14 C 0.253 3.747 15 O -0.462 6.462 16 C -0.098 4.098 17 N -0.198 5.198 18 C -0.075 4.075 19 H 0.066 0.934 20 C -0.184 4.184 21 C -0.146 4.146 22 C -0.156 4.156 23 C -0.055 4.055 24 H 0.052 0.948 25 C -0.182 4.182 26 H 0.055 0.945 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.006 0.994 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.688 -7.969 -16.142 18.376 hybrid contribution -0.026 1.192 2.230 2.529 sum 3.661 -6.777 -13.912 15.902 Atomic orbital electron populations 1.22111 0.94341 1.02147 1.02734 1.21407 0.95184 0.94005 0.87196 1.22070 1.00557 0.95884 1.02369 1.48523 1.49087 1.27048 1.08099 1.18568 0.95023 0.92387 0.79501 1.21595 1.08851 1.23480 1.02147 0.93003 1.25787 0.97746 0.99104 0.96567 1.70051 1.31342 1.44627 1.11133 0.85605 0.78951 0.79309 0.77808 1.18473 1.20585 1.20580 1.22468 0.78249 0.80473 0.93490 1.90601 1.54277 1.59317 1.42049 1.22521 0.98983 0.96200 0.92138 1.65165 1.05169 1.04545 1.44874 1.23125 0.91370 0.97350 0.95616 0.93417 1.21617 0.97520 0.99348 0.99903 1.22410 0.96984 0.94281 1.00959 1.22324 0.94707 0.99982 0.98617 1.22442 0.96570 0.91946 0.94554 0.94786 1.21708 1.00865 0.97282 0.98320 0.94509 0.88404 0.92546 0.86747 0.93864 0.89144 0.93975 0.96074 0.99414 0.92672 0.86491 0.86065 0.90494 0.93565 0.92179 0.92245 0.89178 0.94126 0.89187 0.91932 0.91143 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 9.17 71.98 0.66 -3.60 16 2 C 0.12 3.80 3.15 44.99 0.14 3.94 16 3 C -0.15 -4.72 8.47 71.98 0.61 -4.11 16 4 N -0.60 -24.91 2.39 -802.14 -1.91 -26.82 16 5 C 0.27 14.37 4.59 85.63 0.39 14.76 16 6 C -0.52 -29.85 7.83 25.60 0.20 -29.65 16 7 H 0.05 2.94 7.63 -2.91 -0.02 2.92 16 8 C 0.01 0.37 5.46 84.65 0.46 0.83 16 9 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 10 Si 0.96 45.53 29.54 68.60 2.03 47.55 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 14 C 0.47 19.01 6.57 87.66 0.58 19.59 16 15 O -0.58 -29.08 11.37 -3.04 -0.03 -29.12 16 16 C 0.03 0.97 4.21 85.56 0.36 1.33 16 17 N -0.47 -13.76 4.87 -837.98 -4.08 -17.84 16 18 C 0.03 1.06 2.50 45.26 0.11 1.17 16 19 H 0.05 2.04 5.06 -2.39 -0.01 2.03 16 20 C -0.13 -3.25 9.47 71.98 0.68 -2.57 16 21 C -0.11 -2.99 6.50 31.80 0.21 -2.78 16 22 C -0.12 -3.36 6.57 31.47 0.21 -3.15 16 23 C 0.05 1.58 2.38 45.06 0.11 1.69 16 24 H 0.03 1.28 5.79 -2.39 -0.01 1.27 16 25 C -0.12 -2.72 9.32 71.98 0.67 -2.05 16 26 H 0.04 1.23 6.66 -2.39 -0.02 1.22 16 27 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 2.61 5.75 -2.38 -0.01 2.59 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 2.06 8.14 -2.38 -0.02 2.05 16 32 H 0.04 1.64 6.92 -2.39 -0.02 1.62 16 33 H 0.02 1.18 6.43 -2.39 -0.02 1.16 16 34 H -0.01 -0.78 7.42 -2.38 -0.02 -0.79 16 35 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.12 2.94 7.02 -2.38 -0.02 2.92 16 37 H 0.12 2.89 8.03 -2.39 -0.02 2.87 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.21 7.74 -2.38 -0.02 1.19 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.09 2.03 8.06 -2.39 -0.02 2.01 16 43 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 2.02 7.68 -2.39 -0.02 2.01 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -71.79 357.01 2.59 -69.19 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.92 Total: 18.42 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 5.39 Total: -4.60 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -5.71 Total: -101.46 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.03 Total: -29.12 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.79 2.59 -69.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530817469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.626 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds