Wall clock time and date at job start Tue Mar 31 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47202 * 2 1 4 4 N 1.46501 * 109.47032 * 119.99746 * 2 1 3 5 5 C 1.46495 * 120.00296 * 299.99727 * 4 2 1 6 6 C 1.50699 * 109.47295 * 270.00215 * 5 4 2 7 7 H 1.07997 * 120.00065 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99923 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00127 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 120.00260 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46975 * 269.99745 * 10 8 6 12 12 H 1.48499 * 109.47187 * 150.00020 * 10 8 6 13 13 H 1.48498 * 109.46915 * 29.99856 * 10 8 6 14 14 C 1.34773 * 119.99670 * 120.00020 * 4 2 1 15 15 O 1.21283 * 120.00009 * 179.97438 * 14 4 2 16 16 C 1.50702 * 120.00197 * 359.97438 * 14 4 2 17 17 N 1.46906 * 109.47232 * 173.79935 * 16 14 4 18 18 C 1.47842 * 110.99919 * 311.44469 * 17 16 14 19 19 H 1.08999 * 110.38039 * 27.52766 * 18 17 16 20 20 C 1.53006 * 110.37060 * 265.18874 * 18 17 16 21 21 C 1.54906 * 104.79578 * 146.36394 * 18 17 16 22 22 C 1.55142 * 101.65210 * 322.92326 * 21 18 17 23 23 C 1.47440 * 110.99537 * 72.28260 * 17 16 14 24 24 H 1.08998 * 109.88975 * 117.34086 * 23 17 16 25 25 C 1.53002 * 109.89182 * 356.14567 * 23 17 16 26 26 H 1.09000 * 109.46826 * 300.00249 * 1 2 3 27 27 H 1.09001 * 109.47107 * 60.00090 * 1 2 3 28 28 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46826 * 239.99751 * 2 1 3 30 30 H 1.08996 * 109.47059 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46555 * 300.00218 * 3 2 1 32 32 H 1.08993 * 109.47046 * 59.99620 * 3 2 1 33 33 H 1.08995 * 109.47198 * 149.99738 * 5 4 2 34 34 H 1.08998 * 109.47123 * 30.00112 * 5 4 2 35 35 H 0.96997 * 120.00347 * 179.97438 * 9 8 6 36 36 H 1.08992 * 109.47381 * 293.80335 * 16 14 4 37 37 H 1.09003 * 109.46953 * 53.80700 * 16 14 4 38 38 H 1.09000 * 109.47087 * 63.72244 * 20 18 17 39 39 H 1.08998 * 109.46853 * 183.72389 * 20 18 17 40 40 H 1.09005 * 109.46928 * 303.71955 * 20 18 17 41 41 H 1.09005 * 110.99128 * 204.83744 * 21 18 17 42 42 H 1.08997 * 110.99520 * 81.01665 * 21 18 17 43 43 H 1.08999 * 110.70839 * 277.27316 * 22 21 18 44 44 H 1.09001 * 110.70340 * 154.03609 * 22 21 18 45 45 H 1.09003 * 109.46618 * 52.82019 * 25 23 17 46 46 H 1.09002 * 109.47194 * 172.81078 * 25 23 17 47 47 H 1.08995 * 109.47230 * 292.81893 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6645 -0.1900 2.5268 6 6 2.7032 0.8019 2.9830 7 1 3.5428 1.0364 2.3454 8 6 2.5812 1.4109 4.2139 9 7 3.4880 2.2762 4.6123 10 14 1.1287 1.0059 5.3165 11 1 0.0095 1.9365 5.0225 12 1 1.5314 1.1498 6.7386 13 1 0.6906 -0.3905 5.0650 14 6 2.7932 -1.7863 1.0725 15 8 3.1978 -2.3578 2.0628 16 6 3.1567 -2.3016 -0.2962 17 7 4.1193 -3.4036 -0.1649 18 6 5.2255 -3.0353 0.7442 19 1 4.8892 -2.2960 1.4712 20 6 6.4142 -2.4963 -0.0543 21 6 5.6088 -4.3564 1.4563 22 6 4.2221 -5.0274 1.6396 23 6 3.4653 -4.6167 0.3590 24 1 3.5231 -5.4171 -0.3786 25 6 2.0025 -4.3167 0.6926 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6238 -1.0225 3.2291 34 1 0.6905 0.2975 2.4844 35 1 3.4020 2.7049 5.4781 36 1 2.2592 -2.6612 -0.7993 37 1 3.6032 -1.4970 -0.8805 38 1 6.1238 -1.5763 -0.5617 39 1 7.2437 -2.2918 0.6225 40 1 6.7217 -3.2370 -0.7926 41 1 6.0773 -4.1586 2.4205 42 1 6.2572 -4.9656 0.8266 43 1 3.7199 -4.6387 2.5255 44 1 4.3229 -6.1112 1.6969 45 1 1.5165 -3.8696 -0.1746 46 1 1.4928 -5.2431 0.9571 47 1 1.9561 -3.6237 1.5326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530817470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:05 Heat of formation + Delta-G solvation = -6.048312 kcal Electronic energy + Delta-G solvation = -24918.973132 eV Core-core repulsion = 21716.876743 eV Total energy + Delta-G solvation = -3202.096390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.72253 -38.08403 -35.89547 -32.90783 -32.54376 -31.79882 -31.03865 -28.48186 -27.83071 -26.80645 -25.79578 -23.50108 -22.32919 -21.41743 -20.59698 -19.34901 -17.93444 -16.99254 -16.90247 -15.98720 -15.73047 -15.08842 -14.41173 -14.18239 -14.01143 -13.62770 -13.32105 -13.16680 -12.76989 -12.70436 -12.58811 -12.48748 -12.03161 -11.84732 -11.74067 -11.51753 -11.37701 -11.31382 -11.13582 -11.04101 -10.93618 -10.64269 -10.49098 -10.45978 -10.34161 -10.22421 -10.14007 -9.85738 -9.47971 -9.34052 -8.60132 -7.90933 -7.60005 -6.09766 -4.07213 3.23124 3.23826 3.32751 3.36301 3.79276 4.17754 4.37733 4.92153 4.99561 5.00381 5.16689 5.23558 5.30440 5.41709 5.49293 5.52951 5.57305 5.64425 5.65370 5.78792 5.84521 5.92106 5.94592 6.01426 6.05391 6.09074 6.15008 6.21469 6.24902 6.27670 6.39046 6.44454 6.48151 6.50152 6.70576 6.74448 6.75109 6.94806 6.98106 7.26499 7.33052 7.36434 7.60734 8.24108 8.46155 8.89874 8.96367 9.50984 11.03345 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.006523 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.765844 B = 4291.224609 C = 4742.687503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 C -0.156 4.156 4 N -0.584 5.584 5 C 0.214 3.786 6 C -0.520 4.520 7 H 0.076 0.924 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.483 3.517 15 O -0.530 6.530 16 C 0.020 3.980 17 N -0.501 5.501 18 C 0.042 3.958 19 H 0.105 0.895 20 C -0.133 4.133 21 C -0.115 4.115 22 C -0.129 4.129 23 C 0.079 3.921 24 H 0.074 0.926 25 C -0.198 4.198 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 -9.659 -11.584 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.214 4.214 4 N -0.316 5.316 5 C 0.094 3.906 6 C -0.558 4.558 7 H 0.094 0.906 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.270 3.730 15 O -0.410 6.410 16 C -0.112 4.112 17 N -0.224 5.224 18 C -0.065 4.065 19 H 0.122 0.878 20 C -0.191 4.191 21 C -0.153 4.153 22 C -0.167 4.167 23 C -0.029 4.029 24 H 0.092 0.908 25 C -0.256 4.256 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.091 -9.929 -11.416 15.273 hybrid contribution -1.097 0.225 1.406 1.797 sum -3.187 -9.704 -10.010 14.301 Atomic orbital electron populations 1.22168 0.95638 1.01743 1.02492 1.21061 0.93978 0.94478 0.87790 1.22128 1.01748 0.95242 1.02315 1.48200 1.48937 1.26542 1.07872 1.19610 0.95966 0.95365 0.79704 1.21307 1.09267 1.22347 1.02900 0.90601 1.24845 0.96026 0.94763 0.97374 1.69888 1.34600 1.28273 1.20820 0.86932 0.83231 0.79414 0.80662 1.20220 1.21055 1.19003 1.21387 0.78732 0.80633 0.92239 1.90572 1.52294 1.58050 1.40112 1.22588 0.98111 0.95481 0.95024 1.64040 1.08344 1.02729 1.47320 1.23132 0.90647 0.98722 0.93981 0.87794 1.21710 0.97152 1.00485 0.99748 1.22556 0.96694 0.96040 0.99993 1.22781 0.96042 0.99076 0.98801 1.22200 0.93022 0.92552 0.95159 0.90768 1.22995 0.96027 1.03024 1.03515 0.91653 0.91935 0.92893 0.90364 0.92445 0.93180 0.90104 0.94437 0.95771 0.92653 0.87907 0.88780 0.93183 0.92722 0.92868 0.91364 0.91961 0.90028 0.92364 0.92712 0.93131 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.17 37.16 0.34 -1.81 16 2 C 0.13 2.00 3.15 -67.93 -0.21 1.79 16 3 C -0.16 -2.54 8.47 37.16 0.31 -2.23 16 4 N -0.58 -11.26 2.39 -167.47 -0.40 -11.66 16 5 C 0.21 4.99 3.66 -5.20 -0.02 4.97 16 6 C -0.52 -14.22 8.38 -34.44 -0.29 -14.51 16 7 H 0.08 2.29 7.87 -52.49 -0.41 1.87 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 10 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 14 C 0.48 9.10 5.12 -10.99 -0.06 9.05 16 15 O -0.53 -11.59 9.20 5.55 0.05 -11.54 16 16 C 0.02 0.30 3.94 -4.97 -0.02 0.28 16 17 N -0.50 -7.63 5.07 -216.95 -1.10 -8.73 16 18 C 0.04 0.69 2.41 -66.19 -0.16 0.54 16 19 H 0.10 2.13 4.72 -52.01 -0.25 1.89 16 20 C -0.13 -1.92 9.59 37.16 0.36 -1.56 16 21 C -0.11 -1.71 6.49 -24.59 -0.16 -1.87 16 22 C -0.13 -1.91 5.94 -24.91 -0.15 -2.06 16 23 C 0.08 1.14 3.72 -66.72 -0.25 0.89 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 C -0.20 -2.87 7.71 37.16 0.29 -2.59 16 26 H 0.06 0.97 6.66 -51.93 -0.35 0.63 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.99 5.75 -51.93 -0.30 0.70 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 33 H 0.04 0.96 6.48 -51.93 -0.34 0.62 16 34 H 0.02 0.54 5.85 -51.93 -0.30 0.24 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.10 1.34 5.62 -51.93 -0.29 1.05 16 37 H 0.09 1.34 7.46 -51.93 -0.39 0.95 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 43 H 0.08 1.41 6.76 -51.93 -0.35 1.06 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.72 5.83 -51.93 -0.30 0.42 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 1.68 4.19 -51.93 -0.22 1.46 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -30.42 342.13 -8.39 -38.81 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.09 Total: 4.91 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.11 Total: -7.17 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.73 Total: -46.76 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.05 Total: -11.54 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.42 -8.39 -38.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530817470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.763 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds