Wall clock time and date at job start Tue Mar 31 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47189 * 2 1 4 4 N 1.46506 * 109.46936 * 119.99633 * 2 1 3 5 5 C 1.46503 * 119.99742 * 112.30505 * 4 2 1 6 6 C 1.50699 * 109.47059 * 269.72568 * 5 4 2 7 7 H 1.08000 * 119.99737 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00246 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00201 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99521 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47507 * 90.00198 * 10 8 6 12 12 H 1.48504 * 109.46881 * 209.99850 * 10 8 6 13 13 H 1.48494 * 109.47229 * 329.99584 * 10 8 6 14 14 C 1.34775 * 120.00239 * 292.02988 * 4 2 1 15 15 O 1.21275 * 120.00132 * 175.86196 * 14 4 2 16 16 C 1.50705 * 119.99848 * 355.85862 * 14 4 2 17 17 N 1.46894 * 109.46900 * 155.81130 * 16 14 4 18 18 C 1.47449 * 111.00011 * 173.15744 * 17 16 14 19 19 H 1.08998 * 109.88333 * 242.66053 * 18 17 16 20 20 C 1.53000 * 109.88285 * 3.84584 * 18 17 16 21 21 C 1.54318 * 107.23711 * 123.25190 * 18 17 16 22 22 C 1.55142 * 103.01690 * 22.28178 * 21 18 17 23 23 C 1.47846 * 110.99876 * 293.99466 * 17 16 14 24 24 H 1.09005 * 110.37437 * 332.46607 * 23 17 16 25 25 C 1.52997 * 110.37740 * 94.80971 * 23 17 16 26 26 H 1.08996 * 109.47129 * 289.52082 * 1 2 3 27 27 H 1.08997 * 109.47001 * 49.52766 * 1 2 3 28 28 H 1.08997 * 109.46883 * 169.52234 * 1 2 3 29 29 H 1.08993 * 109.47250 * 239.99738 * 2 1 3 30 30 H 1.09001 * 109.47299 * 162.84433 * 3 2 1 31 31 H 1.08997 * 109.47027 * 282.84467 * 3 2 1 32 32 H 1.08997 * 109.47132 * 42.84495 * 3 2 1 33 33 H 1.09001 * 109.47438 * 29.72193 * 5 4 2 34 34 H 1.08997 * 109.46768 * 149.72480 * 5 4 2 35 35 H 0.96997 * 120.00341 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.46984 * 275.80887 * 16 14 4 37 37 H 1.08992 * 109.46959 * 35.80279 * 16 14 4 38 38 H 1.08997 * 109.47564 * 49.75128 * 20 18 17 39 39 H 1.09006 * 109.46649 * 169.75249 * 20 18 17 40 40 H 1.09003 * 109.47371 * 289.74276 * 20 18 17 41 41 H 1.08998 * 110.70315 * 263.90599 * 21 18 17 42 42 H 1.08996 * 110.85684 * 140.73096 * 21 18 17 43 43 H 1.08995 * 110.99004 * 206.25448 * 22 21 18 44 44 H 1.09000 * 110.98898 * 82.43743 * 22 21 18 45 45 H 1.09006 * 109.46890 * 42.22737 * 25 23 17 46 46 H 1.08999 * 109.47373 * 162.23146 * 25 23 17 47 47 H 1.09009 * 109.47040 * 282.23679 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.7164 -1.9722 1.0685 6 6 1.7172 -3.0979 1.1413 7 1 0.6673 -2.8805 1.2703 8 6 2.1436 -4.4056 1.0443 9 7 1.2717 -5.3880 1.1083 10 14 3.9600 -4.7816 0.8233 11 1 4.5998 -4.9328 2.1547 12 1 4.1143 -6.0425 0.0540 13 1 4.6097 -3.6688 0.0853 14 6 1.8302 -0.1442 2.4138 15 8 2.1669 -0.7500 3.4090 16 6 1.2014 1.2198 2.5386 17 7 0.5841 1.3548 3.8647 18 6 0.1011 2.7304 4.0851 19 1 0.6349 3.1812 4.9217 20 6 0.3107 3.5645 2.8197 21 6 -1.4047 2.6397 4.4106 22 6 -1.5659 1.1814 4.9148 23 6 -0.5561 0.4258 4.0154 24 1 -1.0009 0.2102 3.0438 25 6 -0.1028 -0.8683 4.6940 26 1 -0.3633 0.3434 0.9686 27 1 -0.3633 0.6670 -0.7817 28 1 -0.3633 -1.0105 -0.1869 29 1 1.8933 -0.5138 -0.8899 30 1 3.0869 1.4578 0.3031 31 1 1.9457 1.8612 -1.0019 32 1 1.4508 2.0362 0.6988 33 1 3.2361 -2.0091 0.1110 34 1 3.4389 -2.0746 1.8782 35 1 1.5715 -6.3079 1.0397 36 1 1.9672 1.9855 2.4147 37 1 0.4392 1.3403 1.7689 38 1 -0.0868 3.0260 1.9595 39 1 -0.2078 4.5178 2.9229 40 1 1.3761 3.7443 2.6753 41 1 -2.0032 2.8062 3.5151 42 1 -1.6763 3.3497 5.1917 43 1 -2.5814 0.8213 4.7498 44 1 -1.2901 1.0990 5.9661 45 1 0.5728 -0.6303 5.5157 46 1 -0.9724 -1.3996 5.0809 47 1 0.4143 -1.4970 3.9690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530817471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:08 Heat of formation + Delta-G solvation = -7.022485 kcal Electronic energy + Delta-G solvation = -24813.373561 eV Core-core repulsion = 21611.234928 eV Total energy + Delta-G solvation = -3202.138633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.35371 -38.44852 -35.90884 -33.27947 -32.63423 -31.86111 -30.96009 -28.23406 -27.69256 -27.01206 -26.13636 -23.72429 -22.15933 -21.68756 -20.79598 -19.20309 -18.43052 -16.85761 -16.29667 -16.18422 -15.37052 -15.09496 -14.83556 -14.25917 -14.02617 -13.68711 -13.47853 -13.17323 -12.75447 -12.68160 -12.53371 -12.46584 -12.34483 -12.26319 -11.97878 -11.72419 -11.55969 -11.33882 -11.10875 -11.03276 -10.96691 -10.75119 -10.60785 -10.54851 -10.49391 -10.36135 -10.18015 -9.92065 -9.44915 -8.78989 -8.54528 -7.96882 -7.59682 -6.04520 -4.02123 3.31476 3.37182 3.39728 3.41127 3.75618 4.19239 4.43182 4.63541 4.71829 4.85439 5.00986 5.13170 5.22352 5.28383 5.30021 5.34791 5.36102 5.46267 5.49266 5.55246 5.62194 5.69326 5.75774 5.77074 5.86236 5.96279 5.97129 6.01918 6.03567 6.13732 6.19440 6.29231 6.37335 6.39670 6.60523 6.65839 6.76026 6.98181 7.10916 7.23173 7.32709 7.50479 7.66844 8.38150 8.52826 8.99264 9.15800 9.56838 11.08880 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.005851 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.128651 B = 4784.372403 C = 5398.048077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.138 3.862 3 C -0.184 4.184 4 N -0.594 5.594 5 C 0.218 3.782 6 C -0.521 4.521 7 H 0.074 0.926 8 C 0.072 3.928 9 N -0.899 5.899 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.505 3.495 15 O -0.511 6.511 16 C 0.017 3.983 17 N -0.505 5.505 18 C 0.069 3.931 19 H 0.085 0.915 20 C -0.173 4.173 21 C -0.138 4.138 22 C -0.125 4.125 23 C 0.074 3.926 24 H 0.048 0.952 25 C -0.136 4.136 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.041 0.959 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 18.446 0.447 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.033 3.967 3 C -0.242 4.242 4 N -0.327 5.327 5 C 0.097 3.903 6 C -0.560 4.560 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.538 5.538 10 Si 0.702 3.298 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.291 3.709 15 O -0.386 6.386 16 C -0.113 4.113 17 N -0.230 5.230 18 C -0.039 4.039 19 H 0.103 0.897 20 C -0.231 4.231 21 C -0.177 4.177 22 C -0.164 4.164 23 C -0.034 4.034 24 H 0.066 0.934 25 C -0.193 4.193 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.276 17.774 1.340 18.123 hybrid contribution 0.257 -0.168 -0.896 0.947 sum -3.019 17.606 0.444 17.868 Atomic orbital electron populations 1.22426 0.95858 1.03238 1.01293 1.20924 0.93926 0.92192 0.89657 1.22784 1.02079 0.96901 1.02454 1.48060 1.57389 1.22544 1.04730 1.19641 0.93229 0.80765 0.96664 1.21324 0.95308 0.89384 1.49969 0.90749 1.24851 0.97318 0.96148 0.94710 1.69893 1.33893 0.99331 1.50639 0.86881 0.86197 0.77969 0.78800 1.19982 1.21217 1.19173 1.20172 0.80332 0.87004 0.83400 1.90649 1.49216 1.62713 1.36007 1.23105 0.99829 0.96969 0.91368 1.63478 1.28299 1.03196 1.28050 1.22439 0.94421 0.89238 0.97800 0.89728 1.22437 1.02155 1.00187 0.98295 1.22864 0.96101 0.97599 1.01096 1.22769 0.98959 0.94301 1.00329 1.22598 0.89125 0.93949 0.97720 0.93402 1.21883 0.99975 0.95271 1.02218 0.92511 0.92369 0.91029 0.89170 0.92030 0.91857 0.91311 0.95559 0.94792 0.92690 0.88247 0.90866 0.92115 0.92159 0.91954 0.91576 0.91028 0.91112 0.90606 0.91994 0.94040 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.03 37.16 0.34 -2.18 16 2 C 0.14 2.18 3.28 -67.93 -0.22 1.95 16 3 C -0.18 -2.21 8.12 37.16 0.30 -1.91 16 4 N -0.59 -12.09 2.41 -167.47 -0.40 -12.49 16 5 C 0.22 5.31 4.19 -5.19 -0.02 5.28 16 6 C -0.52 -14.81 9.94 -34.44 -0.34 -15.16 16 7 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 8 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 10 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 11 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 14 C 0.50 10.28 6.11 -10.98 -0.07 10.21 16 15 O -0.51 -12.49 12.81 5.56 0.07 -12.42 16 16 C 0.02 0.27 1.71 -4.98 -0.01 0.26 16 17 N -0.51 -7.77 4.60 -216.95 -1.00 -8.76 16 18 C 0.07 0.81 4.02 -66.72 -0.27 0.54 16 19 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 20 C -0.17 -1.65 7.77 37.16 0.29 -1.36 16 21 C -0.14 -1.43 6.47 -24.91 -0.16 -1.59 16 22 C -0.13 -1.54 6.47 -24.59 -0.16 -1.70 16 23 C 0.07 1.17 2.74 -66.19 -0.18 0.99 16 24 H 0.05 0.80 6.88 -51.93 -0.36 0.44 16 25 C -0.14 -2.56 8.12 37.16 0.30 -2.26 16 26 H 0.06 0.85 4.42 -51.93 -0.23 0.62 16 27 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.09 1.44 7.76 -51.93 -0.40 1.03 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.75 3.91 -51.93 -0.20 0.55 16 33 H 0.03 0.62 6.92 -51.93 -0.36 0.26 16 34 H 0.03 0.89 6.91 -51.93 -0.36 0.53 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.10 1.37 5.48 -51.93 -0.28 1.09 16 37 H 0.07 1.02 1.88 -51.93 -0.10 0.92 16 38 H 0.06 0.59 5.88 -51.93 -0.31 0.29 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.58 7.03 -51.93 -0.37 0.21 16 41 H 0.07 0.64 7.85 -51.93 -0.41 0.24 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 47 H 0.08 1.95 5.66 -51.92 -0.29 1.66 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -32.64 341.78 -8.27 -40.91 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.90 Total: 2.42 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -0.30 Total: -4.94 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.63 Total: -48.18 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.64 -8.27 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530817471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.891 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds