Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47397 * 2 1 4 4 C 1.53004 * 109.47712 * 239.99716 * 2 1 3 5 5 C 1.50708 * 109.46726 * 65.61654 * 4 2 1 6 6 H 1.07997 * 119.99590 * 4.99148 * 5 4 2 7 7 C 1.37874 * 119.99763 * 184.98684 * 5 4 2 8 8 N 1.31516 * 119.99983 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99837 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46949 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47043 * 60.00195 * 9 7 5 12 12 H 1.48494 * 109.47117 * 300.00157 * 9 7 5 13 13 N 1.46900 * 109.47279 * 119.99986 * 2 1 3 14 14 C 1.47443 * 111.00190 * 184.48628 * 13 2 1 15 15 C 1.54324 * 107.23604 * 123.25475 * 14 13 2 16 16 H 1.08999 * 110.70208 * 263.90059 * 15 14 13 17 17 N 1.46894 * 110.70455 * 140.66367 * 15 14 13 18 18 C 1.47013 * 110.99986 * 185.08744 * 17 15 14 19 19 C 1.53104 * 109.26079 * 177.60924 * 18 17 15 20 20 O 1.43012 * 109.25578 * 56.84826 * 19 18 17 21 21 C 1.43017 * 113.74157 * 301.33207 * 20 19 18 22 22 C 1.47016 * 111.00275 * 61.45586 * 17 15 14 23 23 C 1.55138 * 103.01529 * 22.28232 * 15 14 13 24 24 C 1.47851 * 110.99825 * 305.32592 * 13 2 1 25 25 H 1.09002 * 110.37418 * 332.46268 * 24 13 2 26 26 C 1.52995 * 110.37576 * 94.80407 * 24 13 2 27 27 H 1.09000 * 109.46762 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47567 * 300.00172 * 1 2 3 29 29 H 1.09004 * 109.47258 * 60.00520 * 1 2 3 30 30 H 1.09002 * 109.46665 * 305.62332 * 4 2 1 31 31 H 1.08994 * 109.47404 * 185.62148 * 4 2 1 32 32 H 0.96997 * 120.00125 * 359.97438 * 8 7 5 33 33 H 1.09004 * 109.88974 * 242.65822 * 14 13 2 34 34 H 1.09000 * 109.89385 * 3.84550 * 14 13 2 35 35 H 1.08998 * 109.50988 * 297.54702 * 18 17 15 36 36 H 1.09002 * 109.50716 * 57.67316 * 18 17 15 37 37 H 1.08998 * 109.50387 * 296.91748 * 19 18 17 38 38 H 1.08997 * 109.50490 * 176.78748 * 19 18 17 39 39 H 1.09004 * 109.50075 * 298.73445 * 21 20 19 40 40 H 1.08994 * 109.54019 * 178.63097 * 21 20 19 41 41 H 1.09000 * 109.50611 * 302.32598 * 22 17 15 42 42 H 1.08998 * 109.50757 * 62.40717 * 22 17 15 43 43 H 1.08996 * 110.99242 * 82.44253 * 23 15 14 44 44 H 1.09005 * 110.98796 * 206.21533 * 23 15 14 45 45 H 1.09003 * 109.46681 * 59.99792 * 26 24 13 46 46 H 1.08997 * 109.47260 * 179.97438 * 26 24 13 47 47 H 1.09000 * 109.47087 * 300.00597 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6545 0.0649 -2.4758 6 1 1.1725 1.0257 -2.3718 7 6 1.9173 -0.4425 -3.7305 8 7 2.5039 -1.6128 -3.8570 9 14 1.4400 0.5322 -5.2509 10 1 1.8288 -0.2260 -6.4672 11 1 2.1406 1.8416 -5.2395 12 1 -0.0279 0.7562 -5.2546 13 7 2.0197 -0.6925 1.1994 14 6 3.4896 -0.6196 1.2886 15 6 3.8338 0.0276 2.6466 16 1 4.0061 1.0977 2.5308 17 7 5.0020 -0.6256 3.2519 18 6 5.2627 -0.0962 4.5984 19 6 6.4482 -0.8441 5.2144 20 8 7.5836 -0.7184 4.3540 21 6 7.3650 -1.2247 3.0344 22 6 6.1889 -0.4807 2.3966 23 6 2.5595 -0.2346 3.4916 24 6 1.4438 -0.1000 2.4255 25 1 1.2004 0.9498 2.2615 26 6 0.1978 -0.8757 2.8575 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.5969 -1.7158 -1.3009 31 1 3.1254 -0.8093 -1.2002 32 1 2.7521 -2.1188 -3.0675 33 1 3.9144 -1.6222 1.2374 34 1 3.8805 -0.0071 0.4761 35 1 5.4970 0.9662 4.5328 36 1 4.3798 -0.2370 5.2221 37 1 6.1937 -1.8977 5.3295 38 1 6.6812 -0.4167 6.1896 39 1 7.1372 -2.2894 3.0863 40 1 8.2611 -1.0731 2.4327 41 1 5.9822 -0.9021 1.4128 42 1 6.4376 0.5757 2.2950 43 1 2.5732 -1.2376 3.9179 44 1 2.4472 0.5177 4.2724 45 1 0.4667 -1.9131 3.0567 46 1 -0.2140 -0.4273 3.7617 47 1 -0.5466 -0.8396 2.0621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576707026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -42.218651 kcal Electronic energy + Delta-G solvation = -23715.271242 eV Core-core repulsion = 20511.606389 eV Total energy + Delta-G solvation = -3203.664853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.13142 -38.80749 -35.89080 -34.04976 -32.05523 -31.51676 -30.96026 -28.75615 -26.76690 -26.21305 -25.21400 -23.77858 -23.20737 -21.09484 -20.34443 -20.16091 -19.12804 -16.91659 -16.69970 -16.23763 -15.94930 -15.24383 -15.07527 -14.92172 -14.58020 -13.93659 -13.87656 -13.67890 -13.21015 -12.98482 -12.54679 -12.38529 -12.29249 -12.13034 -11.79787 -11.58764 -11.47320 -11.36803 -11.18291 -10.97912 -10.88753 -10.75147 -10.66833 -10.54551 -10.30416 -10.11864 -9.98884 -9.80835 -9.45133 -8.53888 -8.52050 -8.29343 -7.76558 -6.32746 -4.01286 3.44101 3.45878 3.54181 3.64648 3.73283 4.33118 4.50747 4.58098 4.76181 4.81044 4.92676 4.97591 5.05497 5.11474 5.20399 5.33860 5.39691 5.44027 5.45138 5.52108 5.61827 5.68502 5.71936 5.75092 5.83311 5.84898 5.88700 6.01196 6.05918 6.09311 6.22381 6.26714 6.30947 6.44591 6.66479 6.82142 6.84535 6.95734 6.96743 7.03285 7.33839 7.44884 7.64312 7.78030 8.27665 8.49154 8.91861 9.70387 11.07922 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.004326 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.521943 B = 6471.482707 C = 7652.814877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.088 3.912 3 H 0.026 0.974 4 C 0.022 3.978 5 C -0.599 4.599 6 H 0.047 0.953 7 C 0.016 3.984 8 N -0.913 5.913 9 Si 1.066 2.934 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.518 5.518 14 C 0.058 3.942 15 C 0.061 3.939 16 H 0.045 0.955 17 N -0.523 5.523 18 C 0.017 3.983 19 C 0.065 3.935 20 O -0.389 6.389 21 C 0.065 3.935 22 C 0.014 3.986 23 C -0.113 4.113 24 C 0.069 3.931 25 H 0.048 0.952 26 C -0.140 4.140 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.017 0.983 31 H 0.004 0.996 32 H 0.270 0.730 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 2.633 18.192 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.019 4.019 3 H 0.044 0.956 4 C -0.015 4.015 5 C -0.638 4.638 6 H 0.065 0.935 7 C -0.188 4.188 8 N -0.549 5.549 9 Si 0.895 3.105 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.243 5.243 14 C -0.071 4.071 15 C -0.048 4.048 16 H 0.063 0.937 17 N -0.248 5.248 18 C -0.111 4.111 19 C -0.012 4.012 20 O -0.307 6.307 21 C -0.012 4.012 22 C -0.114 4.114 23 C -0.152 4.152 24 C -0.039 4.039 25 H 0.066 0.934 26 C -0.197 4.197 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.022 0.978 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.998 1.670 16.572 17.128 hybrid contribution 0.130 1.783 1.502 2.335 sum 4.128 3.453 18.074 18.858 Atomic orbital electron populations 1.21888 0.95235 1.01528 1.00313 1.21864 0.95123 0.94800 0.90109 0.95624 1.19244 0.95229 0.96100 0.90920 1.21998 1.43382 1.06140 0.92234 0.93491 1.25770 0.94694 0.97119 1.01179 1.70764 1.38092 1.12343 1.33691 0.83584 0.76139 0.75030 0.75771 1.20782 1.21611 1.21476 1.63685 1.04544 1.54230 1.01846 1.22774 0.89310 1.01127 0.93867 1.22975 0.90178 0.95681 0.95983 0.93744 1.62296 1.03811 1.56623 1.02068 1.22781 0.99446 0.97437 0.91466 1.22647 0.85235 1.00144 0.93209 1.87963 1.36594 1.83424 1.22741 1.22675 0.97602 0.97668 0.83250 1.22824 0.90701 0.99781 0.98107 1.22800 0.92937 1.02453 0.96963 1.22446 0.94791 0.96682 0.90016 0.93395 1.21903 0.97021 1.00342 1.00466 0.92649 0.94401 0.91606 0.96478 0.97783 0.91998 0.90007 0.92439 0.94271 0.89547 0.92228 0.88694 0.92082 0.88398 0.88912 0.94071 0.89700 0.91826 0.92230 0.93346 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 7.61 37.15 0.28 -2.28 16 2 C 0.09 1.86 1.64 -67.71 -0.11 1.75 16 3 H 0.03 0.57 8.11 -51.93 -0.42 0.15 16 4 C 0.02 0.58 3.82 -27.88 -0.11 0.47 16 5 C -0.60 -16.89 8.32 -34.44 -0.29 -17.17 16 6 H 0.05 1.30 7.29 -52.49 -0.38 0.92 16 7 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 8 N -0.91 -28.07 13.65 55.43 0.76 -27.31 16 9 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 13 N -0.52 -9.38 4.70 -215.47 -1.01 -10.39 16 14 C 0.06 0.98 4.62 -2.83 -0.01 0.97 16 15 C 0.06 0.84 2.63 -65.89 -0.17 0.67 16 16 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 17 N -0.52 -6.56 4.55 -224.16 -1.02 -7.58 16 18 C 0.02 0.18 5.46 -3.71 -0.02 0.16 16 19 C 0.06 0.63 7.01 37.21 0.26 0.89 16 20 O -0.39 -4.62 10.83 -35.23 -0.38 -5.00 16 21 C 0.06 0.71 7.01 37.21 0.26 0.97 16 22 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16 23 C -0.11 -1.43 4.84 -24.60 -0.12 -1.55 16 24 C 0.07 1.03 2.39 -66.19 -0.16 0.87 16 25 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 26 C -0.14 -1.86 9.13 37.16 0.34 -1.52 16 27 H 0.05 1.09 7.76 -51.93 -0.40 0.68 16 28 H 0.04 0.62 5.61 -51.93 -0.29 0.33 16 29 H 0.07 1.36 7.10 -51.93 -0.37 0.99 16 30 H 0.02 0.47 7.81 -51.93 -0.41 0.07 16 31 H 0.00 0.11 6.65 -51.93 -0.35 -0.24 16 32 H 0.27 8.32 7.19 -40.82 -0.29 8.02 16 33 H 0.08 1.45 7.67 -51.93 -0.40 1.05 16 34 H 0.06 1.09 6.67 -51.93 -0.35 0.74 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.81 7.04 -51.93 -0.37 0.44 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.19 6.91 -51.93 -0.36 0.83 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 1.09 8.04 -51.93 -0.42 0.68 16 44 H 0.06 0.69 8.02 -51.93 -0.42 0.27 16 45 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.97 5.22 -51.93 -0.27 0.69 16 LS Contribution 348.05 15.07 5.25 5.25 Total: -1.00 -30.77 348.05 -9.93 -40.70 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.47 Total: -0.67 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 0.04 Total: -15.26 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -1.28 Total: -45.28 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.38 Total: -5.00 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.77 -9.93 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576707026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.523 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds