Wall clock time and date at job start Tue Mar 31 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47614 * 2 1 4 4 C 1.53003 * 109.46943 * 239.99764 * 2 1 3 5 5 C 1.50705 * 109.47031 * 175.00071 * 4 2 1 6 6 H 1.08002 * 119.99713 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00097 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00062 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99752 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46995 * 90.00026 * 9 7 5 11 11 H 1.48501 * 109.46800 * 209.99870 * 9 7 5 12 12 H 1.48498 * 109.47202 * 330.00039 * 9 7 5 13 13 N 1.46907 * 109.47086 * 120.00435 * 2 1 3 14 14 C 1.47443 * 111.00116 * 55.83832 * 13 2 1 15 15 C 1.54319 * 107.23211 * 236.74566 * 14 13 2 16 16 H 1.09002 * 110.85634 * 96.17381 * 15 14 13 17 17 N 1.46903 * 110.70307 * 219.33097 * 15 14 13 18 18 C 1.47006 * 111.00563 * 297.54713 * 17 15 14 19 19 C 1.53095 * 109.26342 * 177.60523 * 18 17 15 20 20 O 1.43024 * 109.25633 * 56.84705 * 19 18 17 21 21 C 1.43013 * 113.73512 * 301.33401 * 20 19 18 22 22 C 1.47011 * 110.99934 * 173.90764 * 17 15 14 23 23 C 1.55135 * 103.02110 * 337.71588 * 15 14 13 24 24 C 1.47843 * 110.99637 * 294.99594 * 13 2 1 25 25 H 1.09007 * 110.37643 * 27.53525 * 24 13 2 26 26 C 1.52996 * 110.37547 * 265.30474 * 24 13 2 27 27 H 1.09003 * 109.47120 * 59.99966 * 1 2 3 28 28 H 1.09003 * 109.47586 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46992 * 299.99954 * 1 2 3 30 30 H 1.08997 * 109.47496 * 295.00141 * 4 2 1 31 31 H 1.09003 * 109.46783 * 55.00362 * 4 2 1 32 32 H 0.97002 * 120.00150 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.88523 * 356.15311 * 14 13 2 34 34 H 1.08997 * 109.88476 * 117.33645 * 14 13 2 35 35 H 1.09002 * 109.50504 * 297.54399 * 18 17 15 36 36 H 1.09002 * 109.50803 * 57.67129 * 18 17 15 37 37 H 1.09000 * 109.50683 * 296.91684 * 19 18 17 38 38 H 1.08998 * 109.54522 * 176.80340 * 19 18 17 39 39 H 1.09002 * 109.50636 * 298.73107 * 21 20 19 40 40 H 1.09002 * 109.53654 * 178.62478 * 21 20 19 41 41 H 1.09005 * 109.50730 * 302.33249 * 22 17 15 42 42 H 1.09002 * 109.50659 * 62.41850 * 22 17 15 43 43 H 1.08999 * 110.99502 * 277.56552 * 23 15 14 44 44 H 1.08999 * 111.02505 * 153.75832 * 23 15 14 45 45 H 1.09003 * 109.47146 * 60.00094 * 26 24 13 46 46 H 1.08997 * 109.47520 * 180.02562 * 26 24 13 47 47 H 1.08999 * 109.47224 * 300.00047 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3584 8 7 5.5410 -1.1004 -2.4135 9 14 3.3012 -2.1067 -3.6966 10 1 2.9405 -1.1608 -4.7831 11 1 4.1595 -3.1871 -4.2456 12 1 2.0651 -2.6987 -3.1251 13 7 2.0196 -0.6926 1.1994 14 6 1.4670 -2.0569 1.2844 15 6 0.7390 -2.1717 2.6402 16 1 -0.3285 -1.9838 2.5246 17 7 0.9698 -3.4910 3.2437 18 6 0.4238 -4.5609 2.3962 19 6 0.7380 -5.9181 3.0311 20 8 0.2050 -5.9530 4.3578 21 6 0.7159 -4.9249 5.2106 22 6 0.4014 -3.5577 4.5978 23 6 1.4035 -1.0562 3.4893 24 6 1.6463 0.0438 2.4259 25 1 0.7355 0.6194 2.2606 26 6 2.7866 0.9664 2.8611 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7516 -1.7716 -1.2056 31 1 1.6053 -0.2617 -2.1370 32 1 6.0253 -1.5066 -3.1493 33 1 0.7621 -2.2228 0.4697 34 1 2.2742 -2.7877 1.2339 35 1 -0.6561 -4.4410 2.3093 36 1 0.8773 -4.5084 1.4064 37 1 1.8180 -6.0609 3.0689 38 1 0.2865 -6.7122 2.4364 39 1 1.7952 -5.0389 5.3118 40 1 0.2483 -5.0000 6.1924 41 1 0.8386 -2.7728 5.2151 42 1 -0.6788 -3.4210 4.5462 43 1 2.3451 -1.3999 3.9174 44 1 0.7283 -0.7034 4.2688 45 1 2.9976 1.6827 2.0671 46 1 2.4963 1.5010 3.7656 47 1 3.6784 0.3724 3.0611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576707027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:55 Heat of formation + Delta-G solvation = -29.792797 kcal Electronic energy + Delta-G solvation = -24078.481102 eV Core-core repulsion = 20875.355075 eV Total energy + Delta-G solvation = -3203.126028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.12715 -38.82700 -35.79598 -33.79225 -32.06934 -31.37383 -30.48462 -28.73170 -27.79893 -26.40086 -25.32540 -23.72310 -22.84636 -21.25858 -20.31791 -20.00194 -18.37918 -16.90243 -16.57613 -16.36015 -16.15205 -15.14887 -14.96283 -14.68793 -14.48755 -14.20240 -13.90652 -13.48893 -13.29470 -12.69771 -12.55666 -12.42880 -12.21153 -12.13243 -11.85346 -11.68852 -11.63027 -11.50601 -11.34627 -11.03416 -10.81964 -10.69223 -10.60510 -10.46474 -10.37523 -10.10511 -9.75794 -9.62608 -9.49581 -9.02972 -8.43947 -8.40931 -7.50393 -5.89138 -3.82998 3.35382 3.43479 3.45195 3.60837 3.78567 4.46738 4.55195 4.59642 4.82139 4.87209 5.00996 5.03276 5.10930 5.16878 5.25519 5.40164 5.43149 5.45000 5.50338 5.55830 5.66590 5.68120 5.73572 5.77499 5.78860 5.84323 5.86049 5.92957 6.00878 6.14159 6.20807 6.33611 6.44872 6.49255 6.51563 6.64908 6.82702 6.89360 7.01798 7.07548 7.10408 7.36903 7.73216 7.83473 7.98658 8.74066 9.24200 9.73904 11.24940 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.005321 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.752871 B = 5261.003077 C = 6184.710041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.089 3.911 3 H 0.076 0.924 4 C -0.006 4.006 5 C -0.489 4.489 6 H 0.080 0.920 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.489 5.489 14 C 0.058 3.942 15 C 0.061 3.939 16 H 0.042 0.958 17 N -0.522 5.522 18 C 0.015 3.985 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.064 3.936 22 C 0.018 3.982 23 C -0.113 4.113 24 C 0.063 3.937 25 H 0.050 0.950 26 C -0.131 4.131 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.037 0.963 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.046 0.954 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.378 -3.948 14.159 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.019 4.019 3 H 0.095 0.905 4 C -0.043 4.043 5 C -0.527 4.527 6 H 0.098 0.902 7 C -0.137 4.137 8 N -0.548 5.548 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.212 5.212 14 C -0.071 4.071 15 C -0.048 4.048 16 H 0.060 0.940 17 N -0.247 5.247 18 C -0.113 4.113 19 C -0.013 4.013 20 O -0.308 6.308 21 C -0.013 4.013 22 C -0.110 4.110 23 C -0.151 4.151 24 C -0.046 4.046 25 H 0.068 0.932 26 C -0.189 4.189 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.300 -4.232 14.090 18.551 hybrid contribution -2.051 -0.107 -1.040 2.302 sum -13.351 -4.339 13.050 19.168 Atomic orbital electron populations 1.22618 0.99933 1.01200 1.01026 1.21832 0.89627 0.98796 0.91639 0.90544 1.19676 0.98095 0.95157 0.91407 1.21045 0.89317 1.33788 1.08569 0.90222 1.24998 0.94642 0.96286 0.97788 1.69908 1.06393 1.46230 1.32227 0.86924 0.80183 0.80094 0.82839 1.20643 1.21609 1.19445 1.63690 1.56359 1.00538 1.00647 1.22802 0.97991 0.92985 0.93273 1.23011 0.97261 0.88136 0.96376 0.94050 1.62266 1.57702 1.02916 1.01837 1.22806 0.98159 0.91986 0.98327 1.22679 0.99301 0.96241 0.83050 1.87954 1.68243 1.52168 1.22443 1.22650 0.99380 0.85970 0.93286 1.22772 0.97879 0.98946 0.91452 1.22791 1.01140 0.94291 0.96906 1.22566 0.96934 0.94728 0.90332 0.93235 1.21643 0.98468 0.98924 0.99819 0.92463 0.93019 0.93608 0.96668 0.96984 0.93100 0.92651 0.89615 0.94321 0.88931 0.91951 0.88536 0.92138 0.88759 0.89505 0.94439 0.89579 0.92023 0.92360 0.93495 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.02 8.63 37.16 0.32 -2.70 16 2 C 0.09 1.74 2.25 -67.71 -0.15 1.59 16 3 H 0.08 1.55 8.13 -51.93 -0.42 1.13 16 4 C -0.01 -0.14 3.40 -27.88 -0.09 -0.23 16 5 C -0.49 -13.82 9.39 -34.44 -0.32 -14.14 16 6 H 0.08 2.47 7.99 -52.49 -0.42 2.05 16 7 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 8 N -0.91 -28.33 13.96 55.43 0.77 -27.55 16 9 Si 0.87 21.91 27.47 -169.99 -4.67 17.24 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 13 N -0.49 -9.06 4.54 -215.47 -0.98 -10.04 16 14 C 0.06 0.98 4.07 -2.84 -0.01 0.97 16 15 C 0.06 0.84 2.63 -65.89 -0.17 0.67 16 16 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 17 N -0.52 -6.72 4.55 -224.16 -1.02 -7.74 16 18 C 0.02 0.19 5.45 -3.72 -0.02 0.17 16 19 C 0.06 0.72 7.01 37.21 0.26 0.98 16 20 O -0.39 -4.72 10.83 -35.23 -0.38 -5.10 16 21 C 0.06 0.65 7.01 37.21 0.26 0.91 16 22 C 0.02 0.19 5.45 -3.71 -0.02 0.17 16 23 C -0.11 -1.48 4.79 -24.59 -0.12 -1.60 16 24 C 0.06 0.95 2.81 -66.19 -0.19 0.76 16 25 H 0.05 0.72 5.86 -51.93 -0.30 0.42 16 26 C -0.13 -1.91 9.60 37.16 0.36 -1.56 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.81 6.10 -51.93 -0.32 0.50 16 29 H 0.04 0.65 6.24 -51.93 -0.32 0.33 16 30 H 0.02 0.36 5.71 -51.93 -0.30 0.07 16 31 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.06 0.97 4.79 -51.93 -0.25 0.72 16 34 H 0.09 1.65 7.73 -51.93 -0.40 1.25 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.19 6.98 -51.93 -0.36 0.83 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.85 7.00 -51.93 -0.36 0.49 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 44 H 0.06 0.68 8.03 -51.93 -0.42 0.27 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -31.12 348.09 -9.53 -40.65 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.50 Total: -0.43 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 0.00 Total: -12.27 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -1.22 Total: -45.33 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.38 Total: -5.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.12 -9.53 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576707027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.856 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds