Wall clock time and date at job start Tue Mar 31 2020 06:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47015 * 2 1 4 4 C 1.53001 * 109.47245 * 239.99537 * 2 1 3 5 5 C 1.50700 * 109.46886 * 175.00171 * 4 2 1 6 6 H 1.07999 * 120.00152 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99632 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00060 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00159 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46965 * 59.99232 * 9 7 5 11 11 H 1.48497 * 109.47254 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46923 * 299.99960 * 9 7 5 13 13 N 1.46904 * 109.47075 * 119.99382 * 2 1 3 14 14 C 1.48558 * 111.00011 * 48.29818 * 13 2 1 15 15 C 1.54381 * 104.59697 * 200.95713 * 14 13 2 16 16 H 1.08992 * 110.41357 * 264.91395 * 15 14 13 17 17 N 1.46899 * 110.32265 * 142.74398 * 15 14 13 18 18 C 1.47018 * 111.00069 * 187.99926 * 17 15 14 19 19 C 1.53095 * 109.26004 * 177.61272 * 18 17 15 20 20 O 1.43013 * 109.26051 * 56.84616 * 19 18 17 21 21 C 1.43019 * 113.73773 * 301.33446 * 20 19 18 22 22 C 1.47013 * 110.99843 * 64.36698 * 17 15 14 23 23 C 1.54263 * 105.05873 * 23.85365 * 15 14 13 24 24 C 1.48559 * 111.00346 * 292.87902 * 13 2 1 25 25 H 1.09005 * 110.50826 * 40.20610 * 24 13 2 26 26 C 1.53002 * 110.40760 * 277.82024 * 24 13 2 27 27 H 1.09007 * 109.47343 * 292.47456 * 1 2 3 28 28 H 1.09000 * 109.47330 * 52.47061 * 1 2 3 29 29 H 1.09003 * 109.47421 * 172.47457 * 1 2 3 30 30 H 1.09002 * 109.46816 * 294.99861 * 4 2 1 31 31 H 1.08997 * 109.46743 * 54.99935 * 4 2 1 32 32 H 0.97000 * 119.99728 * 180.02562 * 8 7 5 33 33 H 1.08998 * 110.41143 * 82.17860 * 14 13 2 34 34 H 1.09000 * 110.50870 * 319.78987 * 14 13 2 35 35 H 1.09007 * 109.50417 * 297.54783 * 18 17 15 36 36 H 1.09002 * 109.50417 * 57.67030 * 18 17 15 37 37 H 1.08999 * 109.50328 * 296.91728 * 19 18 17 38 38 H 1.09000 * 109.50422 * 176.78350 * 19 18 17 39 39 H 1.09000 * 109.50725 * 298.72894 * 21 20 19 40 40 H 1.09007 * 109.53585 * 178.62327 * 21 20 19 41 41 H 1.08996 * 109.50814 * 302.32751 * 22 17 15 42 42 H 1.09001 * 109.50963 * 62.45340 * 22 17 15 43 43 H 1.08998 * 110.32072 * 241.10411 * 23 15 14 44 44 H 1.08997 * 110.32481 * 118.89386 * 23 15 14 45 45 H 1.09002 * 109.47274 * 303.36692 * 26 24 13 46 46 H 1.08995 * 109.47330 * 63.37294 * 26 24 13 47 47 H 1.09004 * 109.47156 * 183.37252 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0788 -0.0855 -0.5395 7 6 4.2303 -1.1928 -2.3581 8 7 3.5763 -1.8372 -3.2998 9 14 6.0920 -1.0605 -2.4372 10 1 6.6845 -1.6863 -1.2279 11 1 6.5870 -1.7607 -3.6496 12 1 6.4844 0.3706 -2.4966 13 7 2.0196 -0.6924 1.1995 14 6 1.3272 -1.9939 1.3830 15 6 1.5174 -2.3285 2.8780 16 1 2.3816 -2.9783 3.0152 17 7 0.3090 -2.9677 3.4156 18 6 0.3986 -3.1206 4.8750 19 6 -0.9023 -3.7344 5.3993 20 8 -1.1361 -4.9806 4.7377 21 6 -1.2295 -4.8684 3.3150 22 6 0.0680 -4.2661 2.7696 23 6 1.7552 -0.9684 3.5660 24 6 1.6887 0.0735 2.4288 25 1 0.6861 0.4952 2.3576 26 6 2.7176 1.1821 2.6598 27 1 -0.3634 0.3929 0.9497 28 1 -0.3634 0.6260 -0.8150 29 1 -0.3634 -1.0188 -0.1346 30 1 1.7516 -1.7716 -1.2054 31 1 1.6053 -0.2619 -2.1369 32 1 4.0607 -2.2440 -4.0352 33 1 1.7879 -2.7607 0.7602 34 1 0.2674 -1.8993 1.1464 35 1 1.2350 -3.7746 5.1218 36 1 0.5515 -2.1441 5.3346 37 1 -1.7313 -3.0554 5.1999 38 1 -0.8186 -3.9025 6.4730 39 1 -2.0681 -4.2224 3.0551 40 1 -1.3829 -5.8564 2.8807 41 1 -0.0204 -4.1259 1.6923 42 1 0.8991 -4.9385 2.9827 43 1 2.7370 -0.9501 4.0392 44 1 0.9754 -0.7752 4.3026 45 1 3.7154 0.7465 2.7126 46 1 2.6752 1.8945 1.8360 47 1 2.4951 1.6950 3.5955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576707028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:57 Heat of formation + Delta-G solvation = -31.276400 kcal Electronic energy + Delta-G solvation = -24008.987114 eV Core-core repulsion = 20805.796752 eV Total energy + Delta-G solvation = -3203.190362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.09248 -38.71942 -35.79462 -33.69732 -32.09217 -31.37225 -30.48454 -28.47373 -27.28723 -26.38469 -25.25158 -23.64905 -23.15840 -21.28990 -20.58572 -19.56544 -18.51684 -16.98000 -16.18556 -16.12821 -15.49236 -15.35050 -15.14966 -14.82980 -14.41596 -14.11415 -13.90007 -13.53098 -13.49705 -12.69308 -12.41467 -12.40375 -12.02416 -11.89379 -11.70767 -11.54087 -11.48593 -11.45797 -11.03876 -10.96527 -10.74490 -10.58616 -10.58043 -10.48133 -10.31573 -10.25716 -9.84167 -9.73690 -9.15102 -8.98673 -8.38967 -8.24046 -7.57364 -5.86826 -3.84402 3.41534 3.45210 3.48892 3.62265 3.78315 4.57495 4.67157 4.67739 4.85803 4.89728 4.96259 5.03077 5.16621 5.20179 5.31603 5.42790 5.49286 5.50624 5.54359 5.63120 5.71891 5.76408 5.82029 5.85539 5.89129 5.90597 5.96462 6.03751 6.07853 6.17649 6.25751 6.30960 6.47879 6.56103 6.65171 6.68764 6.91448 7.00951 7.03032 7.07473 7.51456 7.63579 7.84609 8.02469 8.14388 8.60642 9.21199 9.77047 11.25183 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.004590 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.452507 B = 6098.359085 C = 6522.270961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.070 0.930 4 C 0.034 3.966 5 C -0.489 4.489 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.474 5.474 14 C 0.041 3.959 15 C 0.078 3.922 16 H 0.050 0.950 17 N -0.529 5.529 18 C 0.014 3.986 19 C 0.065 3.935 20 O -0.389 6.389 21 C 0.065 3.935 22 C 0.016 3.984 23 C -0.112 4.112 24 C 0.053 3.947 25 H 0.049 0.951 26 C -0.133 4.133 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.257 0.743 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 -1.362 16.300 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.032 4.032 3 H 0.088 0.912 4 C -0.003 4.003 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.198 5.198 14 C -0.087 4.087 15 C -0.030 4.030 16 H 0.068 0.932 17 N -0.256 5.256 18 C -0.114 4.114 19 C -0.012 4.012 20 O -0.307 6.307 21 C -0.012 4.012 22 C -0.113 4.113 23 C -0.150 4.150 24 C -0.056 4.056 25 H 0.067 0.933 26 C -0.191 4.191 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.765 -1.383 16.042 18.333 hybrid contribution 0.953 -0.155 -0.131 0.974 sum -7.812 -1.539 15.911 17.792 Atomic orbital electron populations 1.22520 0.99697 1.01552 1.00490 1.22039 0.90171 0.98591 0.92416 0.91183 1.19114 0.96285 0.95180 0.89720 1.21132 0.91823 1.32923 1.06876 0.92243 1.24995 0.97910 0.95924 0.96008 1.69956 1.35250 1.36983 1.12367 0.86711 0.86504 0.77992 0.77046 1.20440 1.21677 1.20503 1.65638 1.51939 1.01583 1.00592 1.23119 0.98312 0.94126 0.93137 1.22446 0.89704 0.95088 0.95761 0.93210 1.62369 1.37946 1.21620 1.03620 1.22821 0.97875 1.01363 0.89364 1.22644 0.96098 0.85762 0.96705 1.87961 1.92927 1.30532 1.19321 1.22674 0.96500 1.01286 0.80749 1.22789 0.97879 0.90019 1.00567 1.22470 1.01347 0.93621 0.97557 1.22632 0.97369 0.94393 0.91222 0.93286 1.21678 0.99560 0.97612 1.00243 0.93785 0.92730 0.92591 0.96584 0.96490 0.93319 0.90127 0.92365 0.94119 0.89359 0.92416 0.88756 0.92320 0.88514 0.89078 0.93906 0.91280 0.91108 0.91909 0.92614 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.17 37.15 0.30 -2.89 16 2 C 0.08 1.55 2.24 -67.71 -0.15 1.40 16 3 H 0.07 1.46 7.27 -51.93 -0.38 1.09 16 4 C 0.03 0.87 4.46 -27.88 -0.12 0.74 16 5 C -0.49 -13.73 8.84 -34.44 -0.30 -14.03 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 N -0.47 -8.93 4.74 -214.24 -1.02 -9.94 16 14 C 0.04 0.72 4.02 -2.18 -0.01 0.71 16 15 C 0.08 1.14 2.79 -66.33 -0.18 0.95 16 16 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 17 N -0.53 -6.73 4.52 -224.68 -1.02 -7.74 16 18 C 0.01 0.15 5.33 -3.71 -0.02 0.13 16 19 C 0.06 0.64 7.01 37.21 0.26 0.90 16 20 O -0.39 -4.64 10.83 -35.23 -0.38 -5.03 16 21 C 0.06 0.70 7.01 37.21 0.26 0.96 16 22 C 0.02 0.19 5.48 -3.71 -0.02 0.17 16 23 C -0.11 -1.50 5.67 -25.35 -0.14 -1.64 16 24 C 0.05 0.81 2.75 -66.07 -0.18 0.63 16 25 H 0.05 0.75 5.98 -51.93 -0.31 0.44 16 26 C -0.13 -1.93 9.31 37.16 0.35 -1.58 16 27 H 0.04 0.69 6.11 -51.93 -0.32 0.37 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.98 6.38 -51.93 -0.33 0.65 16 30 H 0.02 0.43 7.14 -51.93 -0.37 0.06 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.08 1.59 7.67 -51.93 -0.40 1.19 16 34 H 0.06 1.00 5.21 -51.93 -0.27 0.73 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.85 6.07 -51.93 -0.32 0.54 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.15 7.14 -51.93 -0.37 0.78 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 44 H 0.07 0.84 6.18 -51.93 -0.32 0.52 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.05 0.85 7.38 -51.93 -0.38 0.47 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -30.45 348.77 -9.87 -40.33 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.37 Total: -1.24 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -0.07 Total: -12.17 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -1.30 Total: -44.30 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.38 Total: -5.03 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.45 -9.87 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576707028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.049 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds