Wall clock time and date at job start Tue Mar 31 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47333 * 2 1 4 4 C 1.52999 * 109.47299 * 239.99123 * 2 1 3 5 5 C 1.50705 * 109.47111 * 177.07196 * 4 2 1 6 6 H 1.08003 * 119.99744 * 358.95247 * 5 4 2 7 7 C 1.37872 * 119.99774 * 178.94326 * 5 4 2 8 8 N 1.31513 * 120.00356 * 0.02562 * 7 5 4 9 9 Si 1.86811 * 119.99803 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47102 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.46487 * 60.00395 * 9 7 5 12 12 H 1.48499 * 109.47236 * 300.00679 * 9 7 5 13 13 N 1.46900 * 109.46757 * 119.99207 * 2 1 3 14 14 C 1.48534 * 111.00422 * 304.32916 * 13 2 1 15 15 C 1.54929 * 103.22865 * 159.72221 * 14 13 2 16 16 H 1.09005 * 110.88147 * 81.01593 * 15 14 13 17 17 N 1.46903 * 110.72347 * 204.22680 * 15 14 13 18 18 C 1.47012 * 111.00135 * 297.20854 * 17 15 14 19 19 C 1.53092 * 109.26119 * 177.60609 * 18 17 15 20 20 O 1.43011 * 109.25822 * 56.84713 * 19 18 17 21 21 C 1.43010 * 113.74169 * 301.33059 * 20 19 18 22 22 C 1.47013 * 111.00261 * 173.56965 * 17 15 14 23 23 C 1.54603 * 102.92286 * 322.58161 * 15 14 13 24 24 C 1.47905 * 111.00139 * 61.72532 * 13 2 1 25 25 H 1.09008 * 109.91220 * 333.50692 * 24 13 2 26 26 C 1.52997 * 109.91999 * 94.79963 * 24 13 2 27 27 H 1.08996 * 109.47273 * 186.12993 * 1 2 3 28 28 H 1.08994 * 109.47343 * 306.13801 * 1 2 3 29 29 H 1.09007 * 109.46637 * 66.13332 * 1 2 3 30 30 H 1.08995 * 109.46956 * 57.07773 * 4 2 1 31 31 H 1.08996 * 109.47385 * 297.07602 * 4 2 1 32 32 H 0.96999 * 120.00160 * 359.97438 * 8 7 5 33 33 H 1.08999 * 110.66297 * 278.15510 * 14 13 2 34 34 H 1.08992 * 110.66796 * 41.27958 * 14 13 2 35 35 H 1.09004 * 109.50381 * 297.54600 * 18 17 15 36 36 H 1.09008 * 109.50637 * 57.66810 * 18 17 15 37 37 H 1.09000 * 109.50926 * 296.91096 * 19 18 17 38 38 H 1.08997 * 109.50892 * 176.78230 * 19 18 17 39 39 H 1.09004 * 109.50794 * 298.73821 * 21 20 19 40 40 H 1.08997 * 109.54714 * 178.62460 * 21 20 19 41 41 H 1.08995 * 109.50845 * 302.33267 * 22 17 15 42 42 H 1.09003 * 109.50404 * 62.41801 * 22 17 15 43 43 H 1.09000 * 110.30670 * 263.04347 * 23 15 14 44 44 H 1.08997 * 110.38981 * 140.92142 * 23 15 14 45 45 H 1.08997 * 109.47423 * 62.88718 * 26 24 13 46 46 H 1.09005 * 109.47428 * 182.89367 * 26 24 13 47 47 H 1.09003 * 109.47190 * 302.89001 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5454 -0.6589 -1.2859 6 1 4.0835 -0.1404 -0.5061 7 6 4.2355 -1.2637 -2.3149 8 7 3.5802 -1.8948 -3.2646 9 14 6.1014 -1.1867 -2.3601 10 1 6.5977 -1.9083 -3.5593 11 1 6.6527 -1.8220 -1.1363 12 1 6.5371 0.2316 -2.4208 13 7 2.0196 -0.6923 1.1996 14 6 1.4597 -0.0818 2.4324 15 6 1.6289 -1.2007 3.4906 16 1 2.6466 -1.2158 3.8808 17 7 0.6586 -1.0359 4.5811 18 6 0.8801 0.2289 5.2969 19 6 -0.1867 0.3880 6.3832 20 8 -0.1427 -0.7433 7.2569 21 6 -0.3553 -1.9921 6.5930 22 6 0.7099 -2.1753 5.5087 23 6 1.3328 -2.4864 2.6845 24 6 1.5796 -2.1043 1.2133 25 1 0.6573 -2.2114 0.6422 26 6 2.6714 -2.9964 0.6192 27 1 -0.3633 -1.0217 0.1097 28 1 -0.3634 0.6060 0.8299 29 1 -0.3633 0.4158 -0.9399 30 1 1.6346 -0.2389 -2.1383 31 1 1.7202 -1.7631 -1.2232 32 1 2.6113 -1.9351 -3.2409 33 1 2.0282 0.8042 2.7152 34 1 0.4064 0.1630 2.2963 35 1 1.8687 0.2189 5.7561 36 1 0.8124 1.0607 4.5956 37 1 -1.1713 0.4520 5.9199 38 1 0.0074 1.2962 6.9538 39 1 -1.3448 -1.9974 6.1357 40 1 -0.2836 -2.8056 7.3148 41 1 0.5179 -3.0986 4.9621 42 1 1.6959 -2.2243 5.9709 43 1 0.2964 -2.7922 2.8274 44 1 2.0079 -3.2874 2.9858 45 1 3.5660 -2.9376 1.2392 46 1 2.3197 -4.0276 0.5855 47 1 2.9064 -2.6596 -0.3905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576707029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:00 Heat of formation + Delta-G solvation = -31.429832 kcal Electronic energy + Delta-G solvation = -24092.837430 eV Core-core repulsion = 20889.640415 eV Total energy + Delta-G solvation = -3203.197015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14126 -38.88623 -35.96949 -33.65135 -32.35296 -31.45348 -30.45182 -28.54781 -27.06084 -26.12002 -25.15053 -23.71755 -22.88888 -21.10993 -20.96683 -20.02699 -18.39655 -17.08803 -16.51265 -16.24749 -15.64628 -15.36298 -15.18702 -14.98357 -14.18642 -13.92015 -13.72491 -13.65686 -13.28222 -13.06628 -12.65539 -12.54544 -11.93176 -11.73880 -11.69178 -11.59919 -11.56858 -11.19326 -11.07945 -11.02676 -10.80456 -10.66537 -10.55912 -10.39465 -10.18898 -10.04259 -9.79759 -9.69007 -9.27183 -8.50058 -8.48403 -8.22503 -7.58086 -6.22280 -3.87586 3.51203 3.52508 3.52878 3.70258 3.71222 4.56851 4.62068 4.66186 4.78170 4.83210 4.94434 4.99148 5.10345 5.13639 5.32022 5.33958 5.42071 5.50485 5.53475 5.57537 5.61546 5.70621 5.74829 5.83361 5.88097 5.92837 5.95075 6.03084 6.14512 6.20074 6.35258 6.46014 6.48201 6.63894 6.78819 6.80952 6.90955 6.93582 6.96538 7.23463 7.37438 7.63517 7.73006 7.90492 8.37469 8.66899 9.02746 9.79276 11.17362 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.004093 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.585200 B = 6838.921198 C = 7011.982264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.085 3.915 3 H 0.070 0.930 4 C 0.010 3.990 5 C -0.567 4.567 6 H 0.054 0.946 7 C 0.011 3.989 8 N -0.922 5.922 9 Si 1.063 2.937 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.291 1.291 13 N -0.483 5.483 14 C 0.036 3.964 15 C 0.081 3.919 16 H 0.054 0.946 17 N -0.529 5.529 18 C 0.017 3.983 19 C 0.065 3.935 20 O -0.388 6.388 21 C 0.065 3.935 22 C 0.017 3.983 23 C -0.119 4.119 24 C 0.073 3.927 25 H 0.051 0.949 26 C -0.151 4.151 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.006 0.994 31 H 0.018 0.982 32 H 0.266 0.734 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.033 0.967 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.210 1.018 17.601 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.023 4.023 3 H 0.088 0.912 4 C -0.027 4.027 5 C -0.605 4.605 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.559 5.559 9 Si 0.893 3.107 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.217 1.217 13 N -0.206 5.206 14 C -0.092 4.092 15 C -0.028 4.028 16 H 0.072 0.928 17 N -0.255 5.255 18 C -0.112 4.112 19 C -0.012 4.012 20 O -0.307 6.307 21 C -0.012 4.012 22 C -0.112 4.112 23 C -0.158 4.158 24 C -0.036 4.036 25 H 0.069 0.931 26 C -0.208 4.208 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.724 0.619 16.696 18.010 hybrid contribution -1.453 0.430 0.954 1.791 sum -8.177 1.049 17.650 19.480 Atomic orbital electron populations 1.22568 0.99793 1.01214 1.01059 1.21835 0.89942 0.98593 0.91948 0.91154 1.19490 0.97537 0.95154 0.90474 1.21899 0.91017 1.37003 1.10622 0.92738 1.25704 1.06465 0.94081 0.92920 1.70801 1.09864 1.41366 1.33890 0.83611 0.75135 0.76118 0.75846 1.21166 1.21555 1.21740 1.64926 1.54074 1.01082 1.00546 1.23259 0.98861 0.96413 0.90689 1.22565 0.93040 0.96630 0.90527 0.92803 1.62321 1.50901 1.01717 1.10586 1.22780 0.98298 0.93467 0.96627 1.22665 0.98323 0.89010 0.91237 1.87962 1.93180 1.14813 1.34739 1.22658 0.97795 0.86336 0.94441 1.22773 0.98799 0.95296 0.94295 1.22591 1.01312 0.96483 0.95364 1.22237 0.97596 0.90080 0.93662 0.93082 1.22145 0.97116 0.95856 1.05652 0.92811 0.93500 0.92573 0.97590 0.96416 0.92415 0.91231 0.92673 0.93960 0.89387 0.92335 0.88578 0.92352 0.88615 0.89411 0.94040 0.91294 0.91505 0.93327 0.94845 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 8.42 37.16 0.31 -2.92 16 2 C 0.09 1.74 2.46 -67.71 -0.17 1.57 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.01 0.25 3.21 -27.88 -0.09 0.16 16 5 C -0.57 -15.45 6.99 -34.44 -0.24 -15.69 16 6 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.01 0.30 5.32 -17.82 -0.09 0.20 16 8 N -0.92 -27.68 13.65 55.43 0.76 -26.92 16 9 Si 1.06 25.52 29.90 -169.99 -5.08 20.44 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.48 -9.19 4.66 -214.68 -1.00 -10.19 16 14 C 0.04 0.57 4.82 -1.90 -0.01 0.56 16 15 C 0.08 1.14 2.75 -65.85 -0.18 0.96 16 16 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 17 N -0.53 -6.42 4.56 -224.10 -1.02 -7.45 16 18 C 0.02 0.18 5.47 -3.72 -0.02 0.16 16 19 C 0.06 0.63 7.01 37.20 0.26 0.89 16 20 O -0.39 -4.39 10.83 -35.23 -0.38 -4.77 16 21 C 0.06 0.62 7.01 37.21 0.26 0.88 16 22 C 0.02 0.18 5.42 -3.71 -0.02 0.16 16 23 C -0.12 -1.75 5.07 -25.37 -0.13 -1.87 16 24 C 0.07 1.31 2.24 -66.64 -0.15 1.16 16 25 H 0.05 0.96 5.27 -51.92 -0.27 0.68 16 26 C -0.15 -3.03 8.66 37.16 0.32 -2.70 16 27 H 0.05 0.93 5.89 -51.93 -0.31 0.62 16 28 H 0.05 0.72 6.32 -51.93 -0.33 0.39 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.01 0.16 8.04 -51.93 -0.42 -0.26 16 31 H 0.02 0.45 5.19 -51.93 -0.27 0.18 16 32 H 0.27 7.95 7.22 -40.82 -0.29 7.66 16 33 H 0.07 1.06 7.94 -51.93 -0.41 0.65 16 34 H 0.06 0.85 5.63 -51.93 -0.29 0.56 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.92 7.03 -51.92 -0.37 0.56 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.89 6.83 -51.93 -0.35 0.53 16 42 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.95 7.63 -51.93 -0.40 0.56 16 44 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.11 2.67 3.90 -51.93 -0.20 2.46 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -29.69 341.67 -9.69 -39.38 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.16 Total: 0.84 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 0.06 Total: -16.48 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -1.27 Total: -44.56 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.38 Total: -4.77 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.69 -9.69 -39.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576707029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.953 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds