Wall clock time and date at job start Tue Mar 31 2020 06:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.45956 * 2 1 4 4 C 1.53039 * 109.46065 * 240.02554 * 2 1 3 5 5 C 1.53123 * 109.31189 * 180.78663 * 4 2 1 6 6 H 1.08997 * 109.52263 * 297.77214 * 5 4 2 7 7 N 1.46502 * 109.52268 * 177.58131 * 5 4 2 8 8 C 1.34773 * 119.99558 * 154.99918 * 7 5 4 9 9 O 1.21277 * 120.00718 * 0.02562 * 8 7 5 10 10 C 1.50705 * 119.99685 * 180.02562 * 8 7 5 11 11 C 1.53003 * 109.47157 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46945 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47151 * 179.97438 * 12 11 10 14 14 C 1.50692 * 109.47289 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00252 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99647 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00583 * 0.02562 * 16 14 13 18 18 Si 1.86810 * 119.99578 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47078 * 60.00023 * 18 16 14 20 20 H 1.48501 * 109.46791 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46814 * 300.00044 * 18 16 14 22 22 C 1.53203 * 109.11533 * 57.63615 * 5 4 2 23 23 C 1.53030 * 109.30370 * 302.37368 * 22 5 4 24 24 N 1.46846 * 109.52435 * 59.17688 * 23 22 5 25 25 C 1.46902 * 111.00121 * 174.16395 * 24 23 22 26 26 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46858 * 299.97327 * 1 2 3 28 28 H 1.08994 * 109.47405 * 59.96921 * 1 2 3 29 29 H 1.09002 * 109.50563 * 300.74995 * 4 2 1 30 30 H 1.09003 * 109.50107 * 60.82976 * 4 2 1 31 31 H 0.96995 * 119.99779 * 335.00207 * 7 5 4 32 32 H 1.09001 * 109.47215 * 300.00279 * 10 8 7 33 33 H 1.08999 * 109.47002 * 59.99780 * 10 8 7 34 34 H 1.09004 * 109.47033 * 299.99688 * 11 10 8 35 35 H 1.08997 * 109.46704 * 60.00025 * 11 10 8 36 36 H 1.08991 * 109.47515 * 300.00019 * 12 11 10 37 37 H 1.09008 * 109.46763 * 60.00451 * 12 11 10 38 38 H 1.09001 * 109.47358 * 300.00682 * 13 12 11 39 39 H 1.09007 * 109.46577 * 59.99927 * 13 12 11 40 40 H 0.96993 * 120.00406 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.49417 * 182.41991 * 22 5 4 42 42 H 1.09005 * 109.49195 * 62.32110 * 22 5 4 43 43 H 1.09004 * 109.46094 * 299.16423 * 23 22 5 44 44 H 1.08994 * 109.46717 * 179.19390 * 23 22 5 45 45 H 1.09000 * 109.47170 * 184.20873 * 25 24 23 46 46 H 1.09003 * 109.47055 * 304.21119 * 25 24 23 47 47 H 1.09002 * 109.46954 * 64.21044 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5709 -0.7361 -1.2366 6 1 3.9456 0.2869 -1.2682 7 7 4.0633 -1.4754 -2.4017 8 6 5.2924 -1.2196 -2.8918 9 8 5.9910 -0.3778 -2.3682 10 6 5.7988 -1.9797 -4.0906 11 6 7.2096 -1.5012 -4.4392 12 6 7.7239 -2.2733 -5.6559 13 6 9.1345 -1.7944 -6.0049 14 6 9.6407 -2.5545 -7.2036 15 1 9.0185 -3.3038 -7.6702 16 6 10.8984 -2.2931 -7.7047 17 7 11.6563 -1.3810 -7.1363 18 14 11.5257 -3.2348 -9.1911 19 1 10.6227 -2.9960 -10.3456 20 1 12.8953 -2.7709 -9.5290 21 1 11.5579 -4.6865 -8.8799 22 6 4.0547 -1.4189 0.0467 23 6 3.4864 -0.6779 1.2590 24 7 2.0193 -0.6919 1.1994 25 6 1.4373 -0.1107 2.4166 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5134 0.8903 28 1 -0.3634 0.5143 -0.8896 29 1 1.6657 -1.7447 -1.2577 30 1 1.6888 -0.1985 -2.1399 31 1 3.5047 -2.1489 -2.8202 32 1 5.8230 -3.0451 -3.8616 33 1 5.1357 -1.8052 -4.9380 34 1 7.1857 -0.4357 -4.6681 35 1 7.8723 -1.6761 -3.5917 36 1 7.7478 -3.3386 -5.4267 37 1 7.0612 -2.0988 -6.5036 38 1 9.1102 -0.7291 -6.2343 39 1 9.7973 -1.9685 -5.1573 40 1 12.5412 -1.1975 -7.4886 41 1 5.1438 -1.3949 0.0831 42 1 3.7124 -2.4537 0.0594 43 1 3.8403 0.3531 1.2532 44 1 3.8174 -1.1701 2.1735 45 1 0.3517 -0.2013 2.3793 46 1 1.8164 -0.6416 3.2898 47 1 1.7120 0.9420 2.4838 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588544243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:27 Heat of formation + Delta-G solvation = -67.641118 kcal Electronic energy + Delta-G solvation = -21958.745176 eV Core-core repulsion = 18753.977922 eV Total energy + Delta-G solvation = -3204.767254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28932 -38.99101 -35.49897 -34.74379 -32.81996 -32.64860 -31.89545 -29.61511 -27.62775 -26.54670 -25.39364 -23.29645 -22.59558 -21.35371 -20.49322 -19.96230 -19.76331 -16.89560 -16.42434 -16.10197 -15.95646 -15.74344 -15.48942 -14.88533 -14.57906 -14.42595 -13.98468 -13.73832 -13.51927 -13.06947 -12.57774 -12.57432 -12.44167 -12.29436 -12.19518 -12.01245 -11.66142 -11.60056 -11.42472 -11.31421 -11.07441 -10.94312 -10.76772 -10.51600 -10.49124 -10.37596 -9.73819 -9.57999 -9.18863 -9.11026 -8.96149 -8.71114 -8.28067 -5.92882 -3.95423 2.77112 3.12182 3.36858 3.41072 3.43430 3.48777 4.32321 4.47790 4.50843 4.52609 4.76371 4.85599 4.89581 5.03739 5.08762 5.11645 5.16251 5.22471 5.33867 5.37241 5.40664 5.41045 5.42844 5.44610 5.52715 5.61798 5.69615 5.77737 5.84997 5.91335 6.04260 6.17721 6.34143 6.41732 6.58770 6.67587 6.71302 6.87632 7.05643 7.23221 7.49962 7.76392 7.92952 8.08651 8.32189 8.50446 9.12136 9.67957 11.18395 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.053929 B = 0.002195 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.076035 B =12751.502692 C =13002.115907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.084 3.916 3 H 0.043 0.957 4 C -0.118 4.118 5 C 0.143 3.857 6 H 0.083 0.917 7 N -0.734 5.734 8 C 0.513 3.487 9 O -0.536 6.536 10 C -0.139 4.139 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.127 4.127 23 C 0.058 3.942 24 N -0.539 5.539 25 C 0.021 3.979 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.399 0.601 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.174 0.971 17.302 30.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 H 0.061 0.939 4 C -0.156 4.156 5 C 0.038 3.962 6 H 0.101 0.899 7 N -0.386 5.386 8 C 0.300 3.700 9 O -0.412 6.412 10 C -0.179 4.179 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.166 4.166 23 C -0.070 4.070 24 N -0.265 5.265 25 C -0.127 4.127 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.233 0.767 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -24.620 1.195 17.627 30.304 hybrid contribution 0.419 0.022 -0.920 1.011 sum -24.201 1.218 16.708 29.433 Atomic orbital electron populations 1.21914 0.93938 1.02746 1.01922 1.21556 0.95577 0.95478 0.89901 0.93912 1.21909 0.94191 1.02192 0.97335 1.20951 0.93290 0.96763 0.85150 0.89871 1.46150 1.17791 1.42418 1.32272 1.21111 0.80666 0.83037 0.85174 1.90697 1.56067 1.33676 1.60747 1.21799 1.00173 1.00583 0.95345 1.21444 0.92383 1.00720 0.99541 1.21651 0.99844 0.98391 0.94912 1.19094 0.89853 0.96525 0.96256 1.21248 1.00257 1.20921 1.13443 0.92810 1.25048 0.97015 0.95368 0.97184 1.69961 1.09992 1.32573 1.40956 0.86667 0.77864 0.80242 0.83257 1.20294 1.21335 1.20293 1.21999 1.01052 1.00266 0.93274 1.22055 0.86747 0.99240 0.98960 1.61994 1.07388 1.54956 1.02133 1.22425 1.00684 0.97280 0.92320 0.91599 0.92292 0.92007 0.90396 0.90794 0.76684 0.89174 0.89204 0.91865 0.91853 0.93487 0.93506 0.96615 0.96604 0.93003 0.90710 0.90863 0.94615 0.90350 0.90877 0.91388 0.95697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.77 37.15 0.33 -0.51 16 2 C 0.08 0.61 2.44 -67.72 -0.17 0.45 16 3 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 4 C -0.12 -0.87 4.84 -26.65 -0.13 -1.00 16 5 C 0.14 1.41 2.53 -67.76 -0.17 1.23 16 6 H 0.08 1.01 7.58 -51.93 -0.39 0.62 16 7 N -0.73 -7.43 5.08 -53.64 -0.27 -7.71 16 8 C 0.51 7.18 7.80 -10.98 -0.09 7.09 16 9 O -0.54 -9.82 15.64 5.56 0.09 -9.73 16 10 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 11 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 13 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 14 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.13 -1.23 5.68 -26.61 -0.15 -1.38 16 23 C 0.06 0.50 5.46 -3.84 -0.02 0.48 16 24 N -0.54 -4.22 4.75 -234.92 -1.12 -5.33 16 25 C 0.02 0.13 9.05 60.07 0.54 0.67 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.30 6.32 -51.93 -0.33 -0.02 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.40 2.90 8.61 -40.82 -0.35 2.55 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 45 H 0.07 0.39 6.21 -51.93 -0.32 0.07 16 46 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 47 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -33.61 370.37 -9.78 -43.40 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.96 Total: -3.25 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.82 Total: -12.99 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: -0.65 Total: -40.06 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.61 -9.78 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588544243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.245 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds