Wall clock time and date at job start Tue Mar 31 2020 06:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46101 * 2 1 4 4 C 1.53031 * 109.46636 * 240.02907 * 2 1 3 5 5 C 1.53112 * 109.28275 * 180.80671 * 4 2 1 6 6 H 1.08997 * 109.57739 * 177.59164 * 5 4 2 7 7 N 1.46504 * 109.52340 * 297.75219 * 5 4 2 8 8 C 1.34774 * 120.00240 * 204.68037 * 7 5 4 9 9 O 1.21283 * 119.99643 * 359.97438 * 8 7 5 10 10 C 1.50694 * 119.99993 * 179.97438 * 8 7 5 11 11 C 1.53001 * 109.47168 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47355 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47168 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.53120 * 109.15915 * 57.65285 * 5 4 2 23 23 C 1.53042 * 109.28172 * 302.34885 * 22 5 4 24 24 N 1.46839 * 109.52088 * 59.17692 * 23 22 5 25 25 C 1.46902 * 111.00219 * 174.16102 * 24 23 22 26 26 H 1.08998 * 109.47730 * 300.02580 * 1 2 3 27 27 H 1.09003 * 109.46721 * 60.02364 * 1 2 3 28 28 H 1.09003 * 109.47183 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.50345 * 60.86155 * 4 2 1 30 30 H 1.09003 * 109.50261 * 300.75453 * 4 2 1 31 31 H 0.97005 * 119.99919 * 24.67820 * 7 5 4 32 32 H 1.08994 * 109.47211 * 59.99931 * 10 8 7 33 33 H 1.09003 * 109.47615 * 299.99937 * 10 8 7 34 34 H 1.09002 * 109.46926 * 60.00175 * 11 10 8 35 35 H 1.08992 * 109.47494 * 300.00169 * 11 10 8 36 36 H 1.09002 * 109.46807 * 60.00291 * 12 11 10 37 37 H 1.08998 * 109.47285 * 299.99893 * 12 11 10 38 38 H 1.09007 * 109.46922 * 59.99890 * 13 12 11 39 39 H 1.09003 * 109.46836 * 300.00646 * 13 12 11 40 40 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.50294 * 62.28945 * 22 5 4 42 42 H 1.09008 * 109.50561 * 182.40648 * 22 5 4 43 43 H 1.08996 * 109.46399 * 179.19724 * 23 22 5 44 44 H 1.09000 * 109.45511 * 299.17550 * 23 22 5 45 45 H 1.09012 * 109.46651 * 56.04483 * 25 24 23 46 46 H 1.08997 * 109.47624 * 176.04370 * 25 24 23 47 47 H 1.08995 * 109.47081 * 296.05194 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7208 -1.2499 5 6 3.5710 -0.7360 -1.2355 6 1 3.9389 -1.2855 -2.1019 7 7 4.0747 0.6391 -1.2779 8 6 5.3066 0.8909 -1.7630 9 8 5.9984 -0.0210 -2.1640 10 6 5.8245 2.3054 -1.8070 11 6 7.2363 2.3135 -2.3965 12 6 7.7619 3.7497 -2.4419 13 6 9.1740 3.7577 -3.0308 14 6 9.6918 5.1722 -3.0748 15 1 9.0756 5.9843 -2.7181 16 6 10.9524 5.4298 -3.5707 17 7 11.7030 4.4409 -4.0046 18 14 11.5940 7.1832 -3.6259 19 1 12.9646 7.1910 -4.1974 20 1 10.6990 8.0113 -4.4736 21 1 11.6286 7.7412 -2.2502 22 6 4.0547 -1.4188 0.0468 23 6 3.4864 -0.6778 1.2592 24 7 2.0193 -0.6918 1.1994 25 6 1.4371 -0.1107 2.4166 26 1 -0.3634 0.5142 0.8897 27 1 -0.3633 0.5135 -0.8902 28 1 -0.3634 -1.0277 0.0005 29 1 1.6896 -0.1981 -2.1399 30 1 1.6659 -1.7446 -1.2577 31 1 3.5215 1.3684 -0.9568 32 1 5.8505 2.7144 -0.7971 33 1 5.1674 2.9138 -2.4285 34 1 7.2107 1.9043 -3.4065 35 1 7.8932 1.7054 -1.7748 36 1 7.7874 4.1592 -1.4320 37 1 7.1049 4.3575 -3.0640 38 1 9.1489 3.3479 -4.0406 39 1 9.8307 3.1499 -2.4083 40 1 12.5897 4.6221 -4.3537 41 1 3.7125 -2.4535 0.0595 42 1 5.1439 -1.3947 0.0833 43 1 3.8174 -1.1700 2.1737 44 1 3.8401 0.3532 1.2532 45 1 1.8277 0.8967 2.5609 46 1 0.3526 -0.0691 2.3166 47 1 1.6994 -0.7285 3.2754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588544244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:30 Heat of formation + Delta-G solvation = -63.832455 kcal Electronic energy + Delta-G solvation = -22347.857792 eV Core-core repulsion = 19143.255694 eV Total energy + Delta-G solvation = -3204.602098 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52925 -38.86520 -35.37221 -34.73642 -32.82274 -32.65741 -31.81961 -29.57698 -27.67986 -26.64711 -25.52009 -23.29983 -22.62293 -21.61721 -20.58856 -19.94445 -19.25121 -16.98264 -16.23532 -16.22479 -15.94591 -15.78133 -15.63042 -14.78937 -14.62522 -14.41562 -13.95565 -13.74579 -13.47581 -12.88607 -12.86670 -12.55720 -12.43729 -12.26502 -12.14763 -12.06752 -11.74355 -11.65968 -11.52540 -11.38950 -10.97741 -10.94733 -10.54078 -10.51257 -10.49374 -10.38991 -9.76129 -9.59429 -9.20185 -9.14856 -8.97226 -8.66553 -8.28960 -5.93857 -3.96424 2.76262 3.14716 3.35978 3.40288 3.42563 3.50902 4.31890 4.37927 4.49889 4.56013 4.77065 4.80710 4.89574 5.03574 5.04832 5.14369 5.17579 5.29063 5.31543 5.34497 5.38637 5.41493 5.43081 5.49850 5.59591 5.63296 5.71628 5.77492 5.84443 5.91573 5.94888 6.15891 6.32589 6.42611 6.57373 6.69177 6.73105 6.86072 7.04135 7.21780 7.46678 7.75305 7.91857 8.07665 8.30790 8.49394 9.11103 9.66991 11.17460 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034350 B = 0.002472 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.936594 B =11324.915746 C =11540.386842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.039 0.961 4 C -0.118 4.118 5 C 0.142 3.858 6 H 0.090 0.910 7 N -0.734 5.734 8 C 0.512 3.488 9 O -0.534 6.534 10 C -0.139 4.139 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.287 1.287 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.127 4.127 23 C 0.057 3.943 24 N -0.537 5.537 25 C 0.018 3.982 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.395 0.605 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.035 0.965 45 H 0.024 0.976 46 H 0.074 0.926 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.255 -10.619 10.960 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.057 0.943 4 C -0.157 4.157 5 C 0.037 3.963 6 H 0.108 0.892 7 N -0.388 5.388 8 C 0.300 3.700 9 O -0.410 6.410 10 C -0.179 4.179 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.213 1.213 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.166 4.166 23 C -0.071 4.071 24 N -0.263 5.263 25 C -0.130 4.130 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.229 0.771 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.043 0.957 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.713 -11.815 10.550 29.354 hybrid contribution 0.417 2.189 0.246 2.242 sum -24.296 -9.626 10.796 28.276 Atomic orbital electron populations 1.21949 0.94078 1.02778 1.01893 1.21613 0.95551 0.95269 0.90501 0.94338 1.21933 0.94132 1.02590 0.97008 1.20951 0.93200 0.83303 0.98825 0.89184 1.46270 1.17581 1.09025 1.65951 1.21080 0.80717 0.92181 0.76026 1.90701 1.56579 1.47098 1.46603 1.21795 1.00169 0.92537 1.03438 1.21441 0.92281 0.99146 1.01190 1.21650 0.99823 0.93134 1.00176 1.19090 0.89786 0.96749 0.96065 1.21249 1.00146 0.93342 1.41184 0.92836 1.25046 0.97033 0.96941 0.95556 1.69967 1.10134 1.31019 1.42354 0.86669 0.77921 0.85182 0.78269 1.21311 1.20288 1.20302 1.21973 1.01083 0.99927 0.93650 1.22063 0.86643 0.99316 0.99030 1.61975 1.07444 1.54843 1.02008 1.22469 1.00544 0.97542 0.92429 0.92266 0.92007 0.91583 0.90727 0.89530 0.77054 0.89388 0.89274 0.91806 0.91835 0.93555 0.93518 0.96593 0.96607 0.92987 0.90292 0.90671 0.90710 0.94659 0.95699 0.90776 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.79 37.16 0.33 -0.50 16 2 C 0.08 0.54 2.28 -67.72 -0.15 0.38 16 3 H 0.04 0.27 6.64 -51.93 -0.34 -0.08 16 4 C -0.12 -0.85 5.03 -26.66 -0.13 -0.98 16 5 C 0.14 1.35 2.80 -67.81 -0.19 1.16 16 6 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 7 N -0.73 -7.43 4.35 -53.69 -0.23 -7.66 16 8 C 0.51 7.13 7.80 -10.99 -0.09 7.04 16 9 O -0.53 -9.67 15.65 5.56 0.09 -9.59 16 10 C -0.14 -1.88 5.70 -27.89 -0.16 -2.04 16 11 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 13 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 14 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.13 -1.21 5.76 -26.65 -0.15 -1.36 16 23 C 0.06 0.49 5.32 -3.84 -0.02 0.47 16 24 N -0.54 -4.09 4.75 -234.93 -1.11 -5.21 16 25 C 0.02 0.12 9.30 60.07 0.56 0.67 16 26 H 0.06 0.30 6.15 -51.93 -0.32 -0.02 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.39 3.15 7.01 -40.82 -0.29 2.86 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 44 H 0.04 0.32 7.68 -51.93 -0.40 -0.08 16 45 H 0.02 0.16 8.14 -51.92 -0.42 -0.26 16 46 H 0.07 0.40 5.75 -51.93 -0.30 0.10 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -33.23 366.04 -9.61 -42.84 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -8.76 Total: -2.80 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -0.82 Total: -13.12 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.61 Total: -39.88 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.23 -9.61 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588544244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.990 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds