Wall clock time and date at job start Tue Mar 31 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.45891 * 2 1 4 4 C 1.53043 * 109.45992 * 119.96302 * 2 1 3 5 5 C 1.53123 * 109.27487 * 179.19875 * 4 2 1 6 6 H 1.08994 * 109.52264 * 182.44395 * 5 4 2 7 7 N 1.46497 * 109.52171 * 62.24840 * 5 4 2 8 8 C 1.34783 * 119.99421 * 154.99957 * 7 5 4 9 9 O 1.21278 * 120.00060 * 0.02562 * 8 7 5 10 10 C 1.50698 * 119.99791 * 180.02562 * 8 7 5 11 11 C 1.52998 * 109.47280 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47449 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47063 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46735 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00403 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00032 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00245 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99859 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47280 * 89.99573 * 18 16 14 20 20 H 1.48501 * 109.46737 * 209.99710 * 18 16 14 21 21 H 1.48500 * 109.46862 * 329.99203 * 18 16 14 22 22 C 1.53122 * 109.15961 * 302.34802 * 5 4 2 23 23 C 1.53036 * 109.28039 * 57.65379 * 22 5 4 24 24 N 1.46844 * 109.46334 * 240.01902 * 2 1 3 25 25 C 1.46901 * 110.99853 * 54.14542 * 24 2 1 26 26 H 1.09000 * 109.47007 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47128 * 299.97707 * 1 2 3 28 28 H 1.08996 * 109.47530 * 59.98059 * 1 2 3 29 29 H 1.09001 * 109.50250 * 299.13702 * 4 2 1 30 30 H 1.08996 * 109.50226 * 59.21921 * 4 2 1 31 31 H 0.96991 * 120.00574 * 335.00557 * 7 5 4 32 32 H 1.09004 * 109.46990 * 299.99800 * 10 8 7 33 33 H 1.09002 * 109.47510 * 59.99632 * 10 8 7 34 34 H 1.09004 * 109.46699 * 299.99676 * 11 10 8 35 35 H 1.08999 * 109.47588 * 59.99741 * 11 10 8 36 36 H 1.09000 * 109.46478 * 300.00125 * 12 11 10 37 37 H 1.08999 * 109.46834 * 59.99405 * 12 11 10 38 38 H 1.08995 * 109.47131 * 300.00096 * 13 12 11 39 39 H 1.08997 * 109.46781 * 60.00443 * 13 12 11 40 40 H 0.97003 * 120.00225 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.50536 * 177.59871 * 22 5 4 42 42 H 1.08997 * 109.50303 * 297.67397 * 22 5 4 43 43 H 1.09005 * 109.46443 * 180.80381 * 23 22 5 44 44 H 1.09006 * 109.46092 * 60.83372 * 23 22 5 45 45 H 1.09002 * 109.47401 * 59.99789 * 25 24 2 46 46 H 1.09001 * 109.46874 * 299.99802 * 25 24 2 47 47 H 1.09004 * 109.46970 * 179.97438 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5710 -0.7358 1.2358 6 1 3.9379 -1.2859 2.1022 7 7 4.0745 0.6393 1.2780 8 6 5.3040 0.8919 1.7692 9 8 5.9935 -0.0192 2.1757 10 6 5.8218 2.3064 1.8132 11 6 7.2305 2.3155 2.4101 12 6 7.7565 3.7516 2.4542 13 6 9.1650 3.7607 3.0517 14 6 9.6832 5.1751 3.0946 15 1 9.0693 5.9865 2.7323 16 6 10.9408 5.4336 3.5972 17 7 11.3933 6.6679 3.6342 18 14 12.0025 4.0304 4.2245 19 1 12.8282 3.4984 3.1109 20 1 12.8907 4.5271 5.3060 21 1 11.1323 2.9505 4.7555 22 6 4.0548 -1.4186 -0.0464 23 6 3.4865 -0.6778 -1.2589 24 7 2.0193 -0.6919 -1.1993 25 6 1.4373 -0.1108 -2.4165 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8902 28 1 -0.3634 0.5141 -0.8898 29 1 1.6894 -0.1978 2.1400 30 1 1.6653 -1.7443 1.2583 31 1 3.5231 1.3679 0.9527 32 1 5.8532 2.7134 0.8025 33 1 5.1614 2.9161 2.4300 34 1 7.1994 1.9084 3.4208 35 1 7.8906 1.7060 1.7930 36 1 7.7875 4.1583 1.4434 37 1 7.0965 4.3615 3.0711 38 1 9.1335 3.3541 4.0625 39 1 9.8251 3.1508 2.4351 40 1 12.2779 6.8498 3.9882 41 1 5.1439 -1.3946 -0.0829 42 1 3.7132 -2.4536 -0.0587 43 1 3.8175 -1.1701 -2.1734 44 1 3.8403 0.3533 -1.2531 45 1 1.7119 0.9419 -2.4838 46 1 0.3517 -0.2015 -2.3792 47 1 1.8168 -0.6415 -3.2897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588544245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:32 Heat of formation + Delta-G solvation = -61.711692 kcal Electronic energy + Delta-G solvation = -22401.881585 eV Core-core repulsion = 19197.371450 eV Total energy + Delta-G solvation = -3204.510135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57453 -38.91886 -35.44680 -34.85311 -32.84717 -32.63655 -31.87909 -29.97536 -27.74295 -26.69581 -25.76619 -23.32404 -22.48210 -21.63237 -20.53000 -20.01404 -19.29615 -17.06238 -16.60294 -16.25220 -16.05262 -15.81255 -15.69944 -14.84382 -14.64509 -14.19788 -14.00618 -13.81539 -13.56311 -12.92940 -12.87638 -12.63685 -12.50534 -12.31266 -12.30582 -12.14254 -12.04109 -11.75863 -11.67524 -11.42559 -11.10880 -11.00620 -10.72569 -10.55940 -10.52483 -9.94831 -9.79577 -9.63833 -9.39709 -9.20455 -9.10932 -8.69525 -8.48628 -5.99837 -3.97273 2.69383 3.09143 3.36051 3.42967 3.47937 3.49233 4.28614 4.34944 4.50869 4.53348 4.73839 4.76936 4.85428 4.99193 5.02072 5.09870 5.14559 5.24566 5.26128 5.29748 5.31396 5.35357 5.40005 5.47503 5.55501 5.59124 5.68740 5.71809 5.81156 5.84455 5.90615 6.04199 6.16755 6.35772 6.44487 6.66177 6.69546 6.70166 6.83650 7.00196 7.39071 7.40770 7.52081 7.85663 8.23959 8.59133 9.05107 9.63603 11.13675 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.002600 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.998631 B =10767.412994 C =10969.738017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 H 0.039 0.961 4 C -0.119 4.119 5 C 0.142 3.858 6 H 0.090 0.910 7 N -0.734 5.734 8 C 0.513 3.487 9 O -0.536 6.536 10 C -0.140 4.140 11 C -0.105 4.105 12 C -0.102 4.102 13 C -0.015 4.015 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.127 4.127 23 C 0.057 3.943 24 N -0.538 5.538 25 C 0.021 3.979 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.396 0.604 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.016 0.984 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.025 0.975 46 H 0.072 0.928 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.780 -15.881 -10.221 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 H 0.057 0.943 4 C -0.157 4.157 5 C 0.037 3.963 6 H 0.108 0.892 7 N -0.387 5.387 8 C 0.300 3.700 9 O -0.412 6.412 10 C -0.180 4.180 11 C -0.143 4.143 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.166 4.166 23 C -0.071 4.071 24 N -0.263 5.263 25 C -0.127 4.127 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.230 0.770 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.043 0.957 46 H 0.091 0.909 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.267 -16.928 -9.833 31.179 hybrid contribution 0.643 0.653 0.019 0.917 sum -23.624 -16.275 -9.814 30.319 Atomic orbital electron populations 1.21926 0.94026 1.02758 1.01929 1.21623 0.95608 0.95230 0.90441 0.94315 1.21942 0.94089 1.02617 0.97045 1.20955 0.93252 0.83251 0.98825 0.89184 1.46259 1.17804 1.09109 1.65565 1.21061 0.80727 0.92122 0.76046 1.90694 1.56642 1.47172 1.46681 1.21779 0.99969 0.92633 1.03585 1.21473 0.92684 0.99020 1.01160 1.21478 0.98574 0.93291 1.00672 1.19574 0.92369 0.97588 0.95748 1.21185 1.01061 0.92270 1.41194 0.91133 1.25045 0.97795 0.95438 0.95357 1.69922 1.18587 1.18993 1.47067 0.86769 0.80512 0.83110 0.78890 1.20320 1.21458 1.18882 1.21969 1.01031 0.99952 0.93665 1.22066 0.86709 0.99303 0.99011 1.61975 1.07394 1.54880 1.02037 1.22430 1.00673 0.97304 0.92340 0.91601 0.92012 0.92322 0.90711 0.89517 0.76981 0.89215 0.89102 0.91793 0.91837 0.92929 0.92878 0.96611 0.97068 0.92824 0.90726 0.90278 0.90696 0.94668 0.95685 0.90889 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.76 37.16 0.33 -0.47 16 2 C 0.08 0.52 2.28 -67.72 -0.15 0.36 16 3 H 0.04 0.26 6.64 -51.93 -0.34 -0.08 16 4 C -0.12 -0.81 5.04 -26.65 -0.13 -0.95 16 5 C 0.14 1.29 2.81 -67.81 -0.19 1.10 16 6 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 7 N -0.73 -7.07 4.34 -53.69 -0.23 -7.30 16 8 C 0.51 6.78 7.80 -10.98 -0.09 6.70 16 9 O -0.54 -9.27 15.65 5.56 0.09 -9.18 16 10 C -0.14 -1.78 5.70 -27.88 -0.16 -1.94 16 11 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 12 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 13 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 14 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.56 13.96 55.43 0.77 -27.78 16 18 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 22 C -0.13 -1.15 5.76 -26.65 -0.15 -1.30 16 23 C 0.06 0.46 5.32 -3.83 -0.02 0.44 16 24 N -0.54 -3.95 4.75 -234.91 -1.12 -5.06 16 25 C 0.02 0.13 9.05 60.07 0.54 0.67 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.29 6.33 -51.93 -0.33 -0.04 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.40 2.99 7.01 -40.82 -0.29 2.70 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 44 H 0.04 0.31 7.69 -51.93 -0.40 -0.09 16 45 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 46 H 0.07 0.39 6.21 -51.93 -0.32 0.07 16 47 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -33.50 362.72 -9.28 -42.78 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -8.76 Total: -3.08 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.83 Total: -13.68 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.57 Total: -40.14 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.50 -9.28 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588544245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.930 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds