Wall clock time and date at job start Tue Mar 31 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46327 * 2 1 4 4 C 1.53040 * 109.45990 * 119.97340 * 2 1 3 5 5 C 1.53117 * 109.27818 * 179.18411 * 4 2 1 6 6 H 1.09002 * 109.52521 * 62.31292 * 5 4 2 7 7 N 1.46499 * 109.52637 * 182.44213 * 5 4 2 8 8 C 1.34777 * 120.00199 * 205.00369 * 7 5 4 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99928 * 180.27479 * 8 7 5 11 11 C 1.52996 * 109.47159 * 179.72352 * 10 8 7 12 12 C 1.52994 * 109.47118 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.46834 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46874 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00298 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00158 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00384 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99927 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47213 * 89.99902 * 18 16 14 20 20 H 1.48497 * 109.47634 * 210.00351 * 18 16 14 21 21 H 1.48504 * 109.47159 * 330.00243 * 18 16 14 22 22 C 1.53123 * 109.16095 * 302.34651 * 5 4 2 23 23 C 1.53034 * 109.27809 * 57.65325 * 22 5 4 24 24 N 1.46845 * 109.45264 * 240.02028 * 2 1 3 25 25 C 1.46903 * 111.00208 * 54.15279 * 24 2 1 26 26 H 1.08995 * 109.47149 * 300.02540 * 1 2 3 27 27 H 1.08997 * 109.46751 * 60.02501 * 1 2 3 28 28 H 1.08997 * 109.46812 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.50268 * 59.24332 * 4 2 1 30 30 H 1.08996 * 109.50425 * 299.12625 * 4 2 1 31 31 H 0.97000 * 119.99484 * 24.99466 * 7 5 4 32 32 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 33 33 H 1.08994 * 109.46990 * 59.72065 * 10 8 7 34 34 H 1.09004 * 109.47066 * 299.99797 * 11 10 8 35 35 H 1.09000 * 109.47234 * 59.99288 * 11 10 8 36 36 H 1.08998 * 109.46965 * 299.99512 * 12 11 10 37 37 H 1.09003 * 109.47184 * 60.00331 * 12 11 10 38 38 H 1.08990 * 109.47421 * 299.99996 * 13 12 11 39 39 H 1.09002 * 109.47073 * 60.00711 * 13 12 11 40 40 H 0.96995 * 119.99772 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.50366 * 177.59332 * 22 5 4 42 42 H 1.08997 * 109.50103 * 297.71193 * 22 5 4 43 43 H 1.09002 * 109.46408 * 180.80536 * 23 22 5 44 44 H 1.09003 * 109.45553 * 60.83181 * 23 22 5 45 45 H 1.08999 * 109.46751 * 59.99687 * 25 24 2 46 46 H 1.08996 * 109.47075 * 179.97438 * 25 24 2 47 47 H 1.09000 * 109.47053 * 300.00117 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5709 -0.7363 1.2355 6 1 3.9459 0.2866 1.2682 7 7 4.0642 -1.4759 2.4000 8 6 5.2937 -1.2204 2.8893 9 8 5.9919 -0.3785 2.3654 10 6 5.8034 -1.9856 4.0834 11 6 7.2164 -1.5107 4.4282 12 6 7.7336 -2.2871 5.6408 13 6 9.1469 -1.8127 5.9851 14 6 9.6561 -2.5770 7.1799 15 1 9.0342 -3.3265 7.6467 16 6 10.9161 -2.3194 7.6772 17 7 11.3607 -2.9868 8.7196 18 14 11.9915 -1.0226 6.8704 19 1 11.7413 0.2948 7.5082 20 1 13.4205 -1.3903 7.0379 21 1 11.6678 -0.9414 5.4233 22 6 4.0546 -1.4192 -0.0468 23 6 3.4863 -0.6781 -1.2591 24 7 2.0191 -0.6919 -1.1994 25 6 1.4371 -0.1107 -2.4166 26 1 -0.3633 0.5142 0.8897 27 1 -0.3633 0.5134 -0.8902 28 1 -0.3633 -1.0277 0.0005 29 1 1.6657 -1.7446 1.2577 30 1 1.6896 -0.1981 2.1399 31 1 3.5057 -2.1494 2.8188 32 1 5.1443 -1.8126 4.9342 33 1 5.8245 -3.0502 3.8507 34 1 7.8755 -1.6837 3.5774 35 1 7.1953 -0.4461 4.6608 36 1 7.0745 -2.1137 6.4913 37 1 7.7548 -3.3519 5.4084 38 1 9.8058 -1.9863 5.1345 39 1 9.1262 -0.7479 6.2174 40 1 12.2472 -2.8058 9.0692 41 1 5.1437 -1.3953 -0.0833 42 1 3.7121 -2.4539 -0.0594 43 1 3.8172 -1.1704 -2.1736 44 1 3.8404 0.3528 -1.2531 45 1 1.7120 0.9419 -2.4838 46 1 1.8164 -0.6414 -3.2898 47 1 0.3515 -0.2011 -2.3792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588544246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:35 Heat of formation + Delta-G solvation = -64.382809 kcal Electronic energy + Delta-G solvation = -22019.298442 eV Core-core repulsion = 18814.672478 eV Total energy + Delta-G solvation = -3204.625963 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34213 -39.04483 -35.57419 -34.86889 -32.85115 -32.62763 -31.94999 -30.00984 -27.69409 -26.66105 -25.59913 -23.31629 -22.48221 -21.28009 -20.53010 -19.99672 -19.80592 -16.97193 -16.64822 -16.34048 -16.00502 -15.80951 -15.55658 -14.92131 -14.63524 -14.21227 -14.03871 -13.82100 -13.60454 -13.11502 -12.63451 -12.61081 -12.48084 -12.39857 -12.27207 -12.10993 -12.03876 -11.72770 -11.47572 -11.35178 -11.13939 -11.06667 -10.80591 -10.71248 -10.51339 -9.92696 -9.78566 -9.62520 -9.38166 -9.16594 -9.09842 -8.74294 -8.47720 -5.98942 -3.96247 2.70264 3.06703 3.36584 3.43483 3.45575 3.49777 4.28578 4.44454 4.49141 4.51595 4.72712 4.80003 4.85828 5.00693 5.04614 5.07943 5.12839 5.18322 5.27801 5.30636 5.32963 5.36456 5.37457 5.41128 5.49715 5.58312 5.66326 5.73829 5.80554 5.84079 5.99746 6.06101 6.18504 6.35195 6.45458 6.64356 6.68146 6.71079 6.85099 7.01610 7.40383 7.44005 7.53236 7.86617 8.25437 8.60141 9.06139 9.64493 11.14535 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044860 B = 0.002345 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.014465 B =11939.778169 C =12252.947747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.084 3.916 3 H 0.043 0.957 4 C -0.118 4.118 5 C 0.144 3.856 6 H 0.083 0.917 7 N -0.733 5.733 8 C 0.513 3.487 9 O -0.538 6.538 10 C -0.139 4.139 11 C -0.106 4.106 12 C -0.103 4.103 13 C -0.016 4.016 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.264 1.264 22 C -0.127 4.127 23 C 0.058 3.942 24 N -0.539 5.539 25 C 0.021 3.979 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.400 0.600 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.024 0.976 46 H 0.067 0.933 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.758 4.643 -21.116 32.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 H 0.061 0.939 4 C -0.156 4.156 5 C 0.039 3.961 6 H 0.101 0.899 7 N -0.386 5.386 8 C 0.301 3.699 9 O -0.414 6.414 10 C -0.179 4.179 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.166 4.166 23 C -0.070 4.070 24 N -0.265 5.265 25 C -0.127 4.127 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.234 0.766 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.229 4.758 -21.338 32.635 hybrid contribution 0.646 1.138 -0.176 1.320 sum -23.583 5.896 -21.514 32.462 Atomic orbital electron populations 1.21917 0.93910 1.02775 1.01936 1.21556 0.95606 0.95455 0.89890 0.93931 1.21910 0.94139 1.02236 0.97357 1.20945 0.93338 0.96724 0.85135 0.89889 1.46149 1.17752 1.42368 1.32284 1.21092 0.80709 0.83037 0.85104 1.90692 1.56195 1.33833 1.60691 1.21778 0.99926 1.00661 0.95553 1.21473 0.92717 1.00685 0.99500 1.21477 0.98558 0.98779 0.95206 1.19579 0.92508 0.96297 0.96930 1.21188 1.00792 1.21436 1.12242 0.91109 1.25050 0.97846 0.96071 0.94720 1.69923 1.18653 1.41873 1.24097 0.86769 0.79546 0.82168 0.80781 1.20337 1.21472 1.18904 1.21985 1.01015 1.00306 0.93275 1.22058 0.86782 0.99210 0.98957 1.61989 1.07361 1.54966 1.02143 1.22425 1.00708 0.97271 0.92306 0.91996 0.92282 0.91575 0.90351 0.90769 0.76617 0.89040 0.88995 0.91842 0.91867 0.92880 0.92848 0.96625 0.97078 0.92840 0.90743 0.90818 0.90343 0.94642 0.95705 0.91379 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.77 37.16 0.33 -0.48 16 2 C 0.08 0.59 2.44 -67.72 -0.17 0.42 16 3 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.12 -0.83 4.85 -26.65 -0.13 -0.96 16 5 C 0.14 1.34 2.52 -67.81 -0.17 1.17 16 6 H 0.08 0.97 7.58 -51.93 -0.39 0.58 16 7 N -0.73 -7.06 5.08 -53.68 -0.27 -7.33 16 8 C 0.51 6.83 7.80 -10.98 -0.09 6.75 16 9 O -0.54 -9.42 15.64 5.55 0.09 -9.33 16 10 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 11 C -0.11 -1.80 4.50 -26.74 -0.12 -1.92 16 12 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 13 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 14 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.55 13.96 55.43 0.77 -27.78 16 18 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 22 C -0.13 -1.18 5.67 -26.65 -0.15 -1.33 16 23 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 24 N -0.54 -4.06 4.75 -234.92 -1.11 -5.18 16 25 C 0.02 0.13 9.05 60.07 0.54 0.67 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.29 6.32 -51.93 -0.33 -0.04 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.40 2.74 8.61 -40.82 -0.35 2.39 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 44 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 47 H 0.07 0.38 6.21 -51.93 -0.32 0.06 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -33.89 366.75 -9.41 -43.30 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.93 Total: -3.53 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.81 Total: -13.55 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.61 Total: -40.29 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.89 -9.41 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588544246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.088 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds