Wall clock time and date at job start Tue Mar 31 2020 06:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.51958 * 2 1 4 4 C 1.53247 * 109.49038 * 239.93642 * 2 1 3 5 5 H 1.09001 * 109.62844 * 66.50482 * 4 2 1 6 6 C 1.52990 * 109.79084 * 306.01498 * 4 2 1 7 7 N 1.47082 * 108.51964 * 186.20685 * 4 2 1 8 8 C 1.34777 * 120.88231 * 231.18486 * 7 4 2 9 9 O 1.21284 * 119.99750 * 0.02562 * 8 7 4 10 10 C 1.50696 * 120.00141 * 180.02562 * 8 7 4 11 11 C 1.52993 * 109.47429 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47473 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47346 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46931 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99398 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 C 1.47082 * 118.23510 * 51.46441 * 7 4 2 23 23 C 1.53700 * 108.27578 * 308.47646 * 22 7 4 24 24 N 1.46897 * 109.49852 * 120.07302 * 2 1 3 25 25 C 1.46898 * 110.99801 * 307.21401 * 24 2 1 26 26 H 1.09000 * 109.47588 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46904 * 300.06070 * 1 2 3 28 28 H 1.09000 * 109.47807 * 60.05881 * 1 2 3 29 29 H 1.09007 * 109.47333 * 300.87047 * 6 4 2 30 30 H 1.09003 * 109.47423 * 60.86886 * 6 4 2 31 31 H 1.09000 * 109.47175 * 180.87454 * 6 4 2 32 32 H 1.09004 * 109.47476 * 60.00149 * 10 8 7 33 33 H 1.09004 * 109.47043 * 300.00223 * 10 8 7 34 34 H 1.09000 * 109.47250 * 59.99910 * 11 10 8 35 35 H 1.09004 * 109.46862 * 299.99933 * 11 10 8 36 36 H 1.09004 * 109.47368 * 59.99787 * 12 11 10 37 37 H 1.08996 * 109.47261 * 300.00171 * 12 11 10 38 38 H 1.09000 * 109.46986 * 60.00254 * 13 12 11 39 39 H 1.08993 * 109.47662 * 300.00031 * 13 12 11 40 40 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 41 41 H 1.08992 * 109.63460 * 68.24758 * 22 7 4 42 42 H 1.09006 * 109.62579 * 188.83054 * 22 7 4 43 43 H 1.08999 * 109.64944 * 294.08288 * 23 22 7 44 44 H 1.08995 * 109.44293 * 173.96496 * 23 22 7 45 45 H 1.08997 * 109.47477 * 59.99342 * 25 24 2 46 46 H 1.08998 * 109.47090 * 179.97438 * 25 24 2 47 47 H 1.09007 * 109.47096 * 299.99694 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0412 -0.7237 -1.2503 5 1 1.7775 -0.1502 -2.1389 6 6 1.4161 -2.1176 -1.3340 7 7 3.5041 -0.8431 -1.1556 8 6 4.2976 -0.4489 -2.1712 9 8 3.8071 0.0120 -3.1802 10 6 5.7941 -0.5808 -2.0531 11 6 6.4542 -0.0648 -3.3333 12 6 7.9736 -0.1981 -3.2132 13 6 8.6336 0.3174 -4.4936 14 6 10.1303 0.1866 -4.3750 15 1 10.5670 -0.2235 -3.4764 16 6 10.9420 0.5906 -5.4137 17 7 12.2481 0.4760 -5.3104 18 14 10.1868 1.3006 -6.9677 19 1 9.9177 0.2045 -7.9328 20 1 8.9137 1.9868 -6.6304 21 1 11.1284 2.2750 -7.5752 22 6 4.0778 -1.4099 0.0745 23 6 3.4867 -0.6537 1.2749 24 7 2.0202 -0.6939 1.1983 25 6 1.4141 -0.1361 2.4146 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5148 0.8895 28 1 -0.3635 0.5129 -0.8905 29 1 1.6757 -2.6865 -0.4412 30 1 0.3322 -2.0261 -1.4041 31 1 1.7950 -2.6333 -2.2164 32 1 6.0561 -1.6285 -1.9058 33 1 6.1445 0.0044 -1.2028 34 1 6.1923 0.9830 -3.4802 35 1 6.1039 -0.6497 -4.1838 36 1 8.2360 -1.2458 -3.0659 37 1 8.3235 0.3870 -2.3627 38 1 8.3714 1.3650 -4.6412 39 1 8.2837 -0.2680 -5.3439 40 1 12.8192 0.7599 -6.0413 41 1 3.8242 -2.4677 0.1432 42 1 5.1612 -1.2902 0.0621 43 1 3.8235 0.3827 1.2573 44 1 3.8157 -1.1274 2.1998 45 1 0.3309 -0.2475 2.3648 46 1 1.7940 -0.6682 3.2867 47 1 1.6672 0.9211 2.4948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588664471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:58 Heat of formation + Delta-G solvation = -45.138514 kcal Electronic energy + Delta-G solvation = -22802.009152 eV Core-core repulsion = 19598.217684 eV Total energy + Delta-G solvation = -3203.791468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.68986 -38.61025 -35.18648 -34.96393 -33.83684 -32.50813 -30.35411 -29.21257 -28.77851 -26.60594 -25.84064 -23.57058 -23.11481 -21.97611 -20.05676 -19.91702 -18.57023 -17.23320 -16.55789 -16.49353 -16.05186 -15.64207 -15.42389 -14.96636 -14.47136 -14.24275 -14.07318 -13.59955 -13.28872 -13.13485 -12.75359 -12.62359 -12.59583 -12.36911 -12.15931 -12.03131 -11.93961 -11.79740 -11.73401 -11.36020 -11.31370 -11.09483 -10.89109 -10.69913 -10.52041 -9.89125 -9.77201 -9.62854 -9.38247 -9.10290 -9.01019 -8.57634 -8.48068 -5.99381 -3.96688 2.66148 2.79378 3.36494 3.43352 3.46576 3.49674 4.28542 4.48524 4.51378 4.53295 4.70168 4.80411 4.87606 4.96006 5.09116 5.11939 5.13459 5.20110 5.22209 5.28581 5.31766 5.35693 5.38278 5.41395 5.54562 5.55074 5.61703 5.71500 5.79372 5.90398 6.04513 6.07993 6.16106 6.34974 6.45720 6.59003 6.63450 6.70261 6.83954 7.00976 7.31768 7.40024 7.52748 7.86196 8.19019 8.59680 9.05660 9.64149 11.14155 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035084 B = 0.002862 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.895996 B = 9781.732406 C =10193.441793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.044 0.956 4 C 0.146 3.854 5 H 0.099 0.901 6 C -0.153 4.153 7 N -0.618 5.618 8 C 0.516 3.484 9 O -0.538 6.538 10 C -0.138 4.138 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.015 4.015 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.264 1.264 21 H -0.289 1.289 22 C 0.110 3.890 23 C 0.039 3.961 24 N -0.535 5.535 25 C 0.021 3.979 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.040 0.960 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.234 -3.890 16.784 30.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.036 4.036 3 H 0.062 0.938 4 C 0.042 3.958 5 H 0.117 0.883 6 C -0.211 4.211 7 N -0.353 5.353 8 C 0.305 3.695 9 O -0.414 6.414 10 C -0.177 4.177 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.189 1.189 21 H -0.215 1.215 22 C -0.013 4.013 23 C -0.089 4.089 24 N -0.260 5.260 25 C -0.127 4.127 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.058 0.942 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -25.452 -4.085 16.091 30.388 hybrid contribution 0.069 1.206 -0.609 1.353 sum -25.383 -2.879 15.483 29.872 Atomic orbital electron populations 1.21986 0.93510 1.03120 1.02148 1.21999 0.95876 0.95524 0.90201 0.93774 1.21212 0.79518 0.97480 0.97594 0.88277 1.22047 1.00494 0.96206 1.02394 1.48364 1.06343 1.63606 1.16963 1.21091 0.89883 0.76386 0.82124 1.90683 1.76526 1.44631 1.29556 1.21798 0.90217 1.03637 1.02076 1.21487 0.96366 1.01537 0.95002 1.21472 0.91615 1.00742 1.00131 1.19576 0.96410 0.95991 0.93307 1.21189 0.89426 1.41649 1.03416 0.91110 1.25043 0.94713 0.95331 0.98540 1.69925 1.03224 1.48570 1.32857 0.86772 0.79503 0.79409 0.83614 1.20305 1.18901 1.21472 1.21936 0.98587 0.98041 0.82747 1.22594 0.87684 0.99637 0.99015 1.61957 1.06307 1.55487 1.02294 1.22436 1.00647 0.97454 0.92118 0.90979 0.92149 0.91789 0.91227 0.91571 0.92800 0.88988 0.89155 0.91878 0.91792 0.92863 0.92894 0.96649 0.97048 0.92832 0.90466 0.88805 0.94193 0.89361 0.90772 0.91292 0.95707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.20 37.15 0.30 -0.68 16 2 C 0.07 0.62 2.31 -67.59 -0.16 0.47 16 3 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.15 1.50 2.81 -67.49 -0.19 1.31 16 5 H 0.10 1.22 7.06 -51.93 -0.37 0.85 16 6 C -0.15 -1.36 8.66 37.15 0.32 -1.04 16 7 N -0.62 -6.86 2.70 -164.64 -0.44 -7.31 16 8 C 0.52 7.35 7.71 -10.99 -0.08 7.26 16 9 O -0.54 -9.77 15.43 5.55 0.09 -9.69 16 10 C -0.14 -1.81 4.06 -27.89 -0.11 -1.93 16 11 C -0.11 -1.83 4.50 -26.74 -0.12 -1.95 16 12 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 13 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 14 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 18 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 C 0.11 0.90 6.14 -3.36 -0.02 0.88 16 23 C 0.04 0.29 5.64 -3.46 -0.02 0.27 16 24 N -0.54 -4.07 4.23 -234.29 -0.99 -5.06 16 25 C 0.02 0.13 9.01 60.06 0.54 0.67 16 26 H 0.07 0.45 6.39 -51.93 -0.33 0.12 16 27 H 0.06 0.34 6.33 -51.93 -0.33 0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.61 7.08 -51.93 -0.37 0.24 16 30 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.05 7.99 -51.93 -0.41 0.64 16 33 H 0.09 1.03 7.67 -51.93 -0.40 0.64 16 34 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.08 0.58 7.61 -51.93 -0.40 0.19 16 42 H 0.09 0.67 6.02 -51.93 -0.31 0.36 16 43 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16 45 H 0.07 0.39 6.21 -51.93 -0.32 0.07 16 46 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 47 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -33.92 357.10 -8.65 -42.56 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -8.56 Total: -4.88 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.22 Total: -11.10 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.66 Total: -40.16 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.92 -8.65 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588664471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.574 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds