Wall clock time and date at job start Tue Mar 31 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.78447 * 2 1 4 4 C 1.53236 * 109.63076 * 239.51401 * 2 1 3 5 5 H 1.08994 * 109.49638 * 174.16168 * 4 2 1 6 6 C 1.53004 * 109.51268 * 54.09231 * 4 2 1 7 7 N 1.46895 * 109.34036 * 294.12208 * 4 2 1 8 8 C 1.46899 * 111.00492 * 172.74448 * 7 4 2 9 9 C 1.46902 * 111.27009 * 296.89500 * 7 4 2 10 10 C 1.53238 * 109.35988 * 63.09193 * 9 7 4 11 11 N 1.47085 * 109.62525 * 120.48315 * 2 1 3 12 12 C 1.34775 * 120.87951 * 248.49505 * 11 2 1 13 13 O 1.21280 * 120.00235 * 0.02562 * 12 11 2 14 14 C 1.50703 * 119.99881 * 180.02562 * 12 11 2 15 15 C 1.53000 * 109.47145 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47021 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47021 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46756 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00626 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99451 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00199 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99492 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46895 * 90.00395 * 22 20 18 24 24 H 1.48503 * 109.47196 * 209.99876 * 22 20 18 25 25 H 1.48490 * 109.47290 * 330.00228 * 22 20 18 26 26 H 1.08996 * 109.47207 * 180.48398 * 1 2 3 27 27 H 1.09002 * 109.47157 * 300.48885 * 1 2 3 28 28 H 1.08999 * 109.46873 * 60.48609 * 1 2 3 29 29 H 1.08993 * 109.47212 * 300.12220 * 6 4 2 30 30 H 1.08998 * 109.47016 * 60.12628 * 6 4 2 31 31 H 1.09002 * 109.46617 * 180.11888 * 6 4 2 32 32 H 1.08998 * 109.47691 * 188.25300 * 8 7 4 33 33 H 1.08999 * 109.47156 * 308.25907 * 8 7 4 34 34 H 1.08998 * 109.46662 * 68.25148 * 8 7 4 35 35 H 1.09002 * 109.49551 * 183.06509 * 9 7 4 36 36 H 1.08996 * 109.49163 * 303.12080 * 9 7 4 37 37 H 1.08993 * 109.63279 * 65.89374 * 10 9 7 38 38 H 1.09004 * 109.62633 * 186.48058 * 10 9 7 39 39 H 1.09000 * 109.46597 * 299.99872 * 14 12 11 40 40 H 1.09000 * 109.47111 * 59.99407 * 14 12 11 41 41 H 1.08993 * 109.47374 * 299.99945 * 15 14 12 42 42 H 1.09003 * 109.46894 * 60.00217 * 15 14 12 43 43 H 1.08993 * 109.47398 * 300.00415 * 16 15 14 44 44 H 1.09008 * 109.46843 * 60.00133 * 16 15 14 45 45 H 1.09000 * 109.47381 * 300.00015 * 17 16 15 46 46 H 1.08995 * 109.47178 * 60.00609 * 17 16 15 47 47 H 0.97004 * 119.99781 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7322 -1.2438 5 1 3.1298 -0.6418 -1.2961 6 6 1.4199 -0.1140 -2.4960 7 7 1.6747 -2.1514 -1.1608 8 6 1.9979 -2.8536 -2.4100 9 6 2.3147 -2.8026 -0.0101 10 6 1.8115 -2.1554 1.2846 11 7 2.0240 -0.7028 1.1939 12 6 2.6558 -0.0336 2.1786 13 8 2.8230 1.1641 2.0874 14 6 3.1544 -0.7737 3.3930 15 6 3.8289 0.2117 4.3495 16 6 4.3345 -0.5396 5.5827 17 6 5.0095 0.4457 6.5389 18 6 5.5081 -0.2945 7.7533 19 1 5.3589 -1.3610 7.8347 20 6 6.1558 0.3898 8.7599 21 7 6.3380 1.6884 8.6605 22 14 6.7744 -0.5278 10.2648 23 1 8.1645 -0.9917 10.0249 24 1 6.7512 0.3782 11.4413 25 1 5.8996 -1.6991 10.5247 26 1 -0.3633 -1.0276 0.0087 27 1 -0.3633 0.5214 0.8856 28 1 -0.3633 0.5063 -0.8943 29 1 0.3350 -0.2038 -2.4429 30 1 1.6948 0.9390 -2.5573 31 1 1.7849 -0.6367 -3.3801 32 1 1.5834 -3.8612 -2.3781 33 1 1.5698 -2.3112 -3.2530 34 1 3.0802 -2.9095 -2.5258 35 1 2.0649 -3.8636 -0.0072 36 1 3.3959 -2.6837 -0.0798 37 1 0.7487 -2.3625 1.4084 38 1 2.3667 -2.5547 2.1334 39 1 2.3147 -1.2527 3.8966 40 1 3.8744 -1.5323 3.0859 41 1 4.6685 0.6902 3.8456 42 1 3.1090 0.9704 4.6566 43 1 3.4946 -1.0179 6.0865 44 1 5.0542 -1.2987 5.2759 45 1 5.8496 0.9236 6.0349 46 1 4.2902 1.2049 6.8457 47 1 6.7933 2.1699 9.3690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588664472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:01 Heat of formation + Delta-G solvation = -47.020116 kcal Electronic energy + Delta-G solvation = -22747.531710 eV Core-core repulsion = 19543.658650 eV Total energy + Delta-G solvation = -3203.873060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.65173 -38.56271 -35.09696 -34.87099 -33.81332 -32.53811 -30.08825 -29.06310 -28.70414 -26.54810 -25.60074 -23.56242 -23.07934 -22.14951 -20.11570 -19.82063 -18.52775 -17.14304 -16.49791 -16.13122 -15.99496 -15.57459 -15.38742 -14.93061 -14.46470 -14.35044 -14.09842 -13.53779 -13.20750 -13.11505 -12.75514 -12.55850 -12.50019 -12.21384 -12.05151 -11.95926 -11.78442 -11.64756 -11.55270 -11.30735 -11.23453 -10.96811 -10.85025 -10.51473 -10.48389 -10.37297 -9.68852 -9.58790 -9.19321 -8.97106 -8.95682 -8.53699 -8.28844 -5.93571 -3.96038 2.72815 2.84204 3.35011 3.40978 3.44242 3.49571 4.32495 4.50083 4.52137 4.56734 4.74935 4.84332 4.91157 4.99057 5.10855 5.15501 5.17749 5.25543 5.26351 5.35489 5.38030 5.41608 5.42636 5.43784 5.58354 5.58850 5.65809 5.75312 5.87018 5.94740 6.11700 6.16471 6.31116 6.42582 6.57977 6.62375 6.66455 6.86731 7.04336 7.22264 7.37841 7.76148 7.92474 8.08103 8.25732 8.49822 9.11753 9.67478 11.17802 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037044 B = 0.002700 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.670332 B =10366.104697 C =10766.577257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.100 0.900 4 C 0.072 3.928 5 H 0.044 0.956 6 C -0.151 4.151 7 N -0.535 5.535 8 C 0.019 3.981 9 C 0.040 3.960 10 C 0.111 3.889 11 N -0.618 5.618 12 C 0.515 3.485 13 O -0.536 6.536 14 C -0.137 4.137 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.024 0.976 35 H 0.088 0.912 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.301 -9.899 -24.185 28.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.042 3.958 3 H 0.118 0.882 4 C -0.037 4.037 5 H 0.062 0.938 6 C -0.208 4.208 7 N -0.260 5.260 8 C -0.129 4.129 9 C -0.089 4.089 10 C -0.013 4.013 11 N -0.353 5.353 12 C 0.305 3.695 13 O -0.412 6.412 14 C -0.177 4.177 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.558 4.558 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.628 -9.113 -24.046 28.648 hybrid contribution 1.304 -0.569 0.704 1.587 sum -11.324 -9.682 -23.341 27.691 Atomic orbital electron populations 1.22048 0.94394 1.02915 1.01763 1.21208 0.94855 0.96836 0.82894 0.88225 1.21998 0.97823 0.88186 0.95677 0.93788 1.22014 1.02163 1.00654 0.96011 1.61960 1.58876 1.01931 1.03243 1.22478 0.98880 0.99315 0.92238 1.22509 0.96909 0.98881 0.90608 1.21829 1.02056 0.79875 0.97529 1.48365 1.58489 1.08308 1.20181 1.21114 0.76557 0.87878 0.83968 1.90689 1.56413 1.15014 1.79043 1.21818 1.01729 1.00193 0.93955 1.21458 1.00115 0.97160 0.95380 1.21645 0.99223 0.99099 0.94757 1.19095 0.95445 0.94127 0.93064 1.21288 1.36545 0.94392 1.03591 0.92764 1.25045 0.96246 0.94849 0.98455 1.69977 1.42778 1.07068 1.33667 0.86612 0.79174 0.79646 0.82659 1.20726 1.21254 1.19919 0.91272 0.92802 0.91568 0.90959 0.91742 0.92087 0.91274 0.90633 0.95707 0.89388 0.94228 0.90551 0.88848 0.89153 0.89329 0.91882 0.91797 0.93473 0.93550 0.96625 0.96575 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.69 37.16 0.32 -1.09 16 2 C 0.15 1.56 2.83 -67.49 -0.19 1.37 16 3 H 0.10 1.27 7.06 -51.93 -0.37 0.90 16 4 C 0.07 0.64 2.31 -67.59 -0.16 0.48 16 5 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 6 C -0.15 -1.02 8.24 37.16 0.31 -0.72 16 7 N -0.53 -4.21 4.23 -234.59 -0.99 -5.20 16 8 C 0.02 0.12 9.27 60.06 0.56 0.67 16 9 C 0.04 0.30 5.61 -3.70 -0.02 0.28 16 10 C 0.11 0.94 6.10 -3.60 -0.02 0.92 16 11 N -0.62 -7.17 2.70 -164.92 -0.45 -7.61 16 12 C 0.52 7.69 7.71 -10.98 -0.08 7.60 16 13 O -0.54 -10.16 15.43 5.56 0.09 -10.07 16 14 C -0.14 -1.91 4.07 -27.88 -0.11 -2.02 16 15 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 16 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 17 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 18 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 22 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.07 0.63 7.06 -51.93 -0.37 0.26 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.51 6.36 -51.93 -0.33 0.18 16 29 H 0.07 0.47 6.35 -51.93 -0.33 0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.36 6.14 -51.93 -0.32 0.04 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.41 5.72 -51.93 -0.30 0.12 16 34 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.60 7.60 -51.93 -0.39 0.21 16 38 H 0.09 0.70 6.02 -51.93 -0.31 0.39 16 39 H 0.09 1.09 8.00 -51.93 -0.42 0.68 16 40 H 0.09 1.07 7.66 -51.93 -0.40 0.67 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 360.29 15.07 5.43 5.43 Total: -1.00 -33.69 360.29 -8.98 -42.66 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -8.56 Total: -4.71 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.21 Total: -10.48 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: -0.70 Total: -39.87 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.69 -8.98 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588664472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.356 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds