Wall clock time and date at job start Tue Mar 31 2020 06:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.78447 * 2 1 4 4 C 1.53236 * 109.63076 * 239.51401 * 2 1 3 5 5 H 1.08994 * 109.49638 * 174.16168 * 4 2 1 6 6 C 1.53004 * 109.51268 * 54.09231 * 4 2 1 7 7 N 1.46895 * 109.34036 * 294.12208 * 4 2 1 8 8 C 1.46899 * 111.00492 * 172.74448 * 7 4 2 9 9 C 1.46902 * 111.27009 * 296.89500 * 7 4 2 10 10 C 1.53238 * 109.35988 * 63.09193 * 9 7 4 11 11 N 1.47085 * 109.62525 * 120.48315 * 2 1 3 12 12 C 1.34775 * 120.87951 * 248.49505 * 11 2 1 13 13 O 1.21280 * 120.00235 * 0.02562 * 12 11 2 14 14 C 1.50703 * 119.99881 * 180.02562 * 12 11 2 15 15 C 1.53000 * 109.47145 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47021 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47021 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46756 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00626 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99451 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00199 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99492 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46895 * 90.00395 * 22 20 18 24 24 H 1.48503 * 109.47196 * 209.99876 * 22 20 18 25 25 H 1.48490 * 109.47290 * 330.00228 * 22 20 18 26 26 H 1.08996 * 109.47207 * 180.48398 * 1 2 3 27 27 H 1.09002 * 109.47157 * 300.48885 * 1 2 3 28 28 H 1.08999 * 109.46873 * 60.48609 * 1 2 3 29 29 H 1.08993 * 109.47212 * 300.12220 * 6 4 2 30 30 H 1.08998 * 109.47016 * 60.12628 * 6 4 2 31 31 H 1.09002 * 109.46617 * 180.11888 * 6 4 2 32 32 H 1.08998 * 109.47691 * 188.25300 * 8 7 4 33 33 H 1.08999 * 109.47156 * 308.25907 * 8 7 4 34 34 H 1.08998 * 109.46662 * 68.25148 * 8 7 4 35 35 H 1.09002 * 109.49551 * 183.06509 * 9 7 4 36 36 H 1.08996 * 109.49163 * 303.12080 * 9 7 4 37 37 H 1.08993 * 109.63279 * 65.89374 * 10 9 7 38 38 H 1.09004 * 109.62633 * 186.48058 * 10 9 7 39 39 H 1.09000 * 109.46597 * 299.99872 * 14 12 11 40 40 H 1.09000 * 109.47111 * 59.99407 * 14 12 11 41 41 H 1.08993 * 109.47374 * 299.99945 * 15 14 12 42 42 H 1.09003 * 109.46894 * 60.00217 * 15 14 12 43 43 H 1.08993 * 109.47398 * 300.00415 * 16 15 14 44 44 H 1.09008 * 109.46843 * 60.00133 * 16 15 14 45 45 H 1.09000 * 109.47381 * 300.00015 * 17 16 15 46 46 H 1.08995 * 109.47178 * 60.00609 * 17 16 15 47 47 H 0.97004 * 119.99781 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7322 -1.2438 5 1 3.1298 -0.6418 -1.2961 6 6 1.4199 -0.1140 -2.4960 7 7 1.6747 -2.1514 -1.1608 8 6 1.9979 -2.8536 -2.4100 9 6 2.3147 -2.8026 -0.0101 10 6 1.8115 -2.1554 1.2846 11 7 2.0240 -0.7028 1.1939 12 6 2.6558 -0.0336 2.1786 13 8 2.8230 1.1641 2.0874 14 6 3.1544 -0.7737 3.3930 15 6 3.8289 0.2117 4.3495 16 6 4.3345 -0.5396 5.5827 17 6 5.0095 0.4457 6.5389 18 6 5.5081 -0.2945 7.7533 19 1 5.3589 -1.3610 7.8347 20 6 6.1558 0.3898 8.7599 21 7 6.3380 1.6884 8.6605 22 14 6.7744 -0.5278 10.2648 23 1 8.1645 -0.9917 10.0249 24 1 6.7512 0.3782 11.4413 25 1 5.8996 -1.6991 10.5247 26 1 -0.3633 -1.0276 0.0087 27 1 -0.3633 0.5214 0.8856 28 1 -0.3633 0.5063 -0.8943 29 1 0.3350 -0.2038 -2.4429 30 1 1.6948 0.9390 -2.5573 31 1 1.7849 -0.6367 -3.3801 32 1 1.5834 -3.8612 -2.3781 33 1 1.5698 -2.3112 -3.2530 34 1 3.0802 -2.9095 -2.5258 35 1 2.0649 -3.8636 -0.0072 36 1 3.3959 -2.6837 -0.0798 37 1 0.7487 -2.3625 1.4084 38 1 2.3667 -2.5547 2.1334 39 1 2.3147 -1.2527 3.8966 40 1 3.8744 -1.5323 3.0859 41 1 4.6685 0.6902 3.8456 42 1 3.1090 0.9704 4.6566 43 1 3.4946 -1.0179 6.0865 44 1 5.0542 -1.2987 5.2759 45 1 5.8496 0.9236 6.0349 46 1 4.2902 1.2049 6.8457 47 1 6.7933 2.1699 9.3690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588664472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:00 Heat of formation + Delta-G solvation = -68.552071 kcal Electronic energy + Delta-G solvation = -22748.465406 eV Core-core repulsion = 19543.658650 eV Total energy + Delta-G solvation = -3204.806756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56903 -39.53505 -36.67914 -35.90318 -34.81604 -34.31032 -31.61288 -30.08470 -29.40116 -27.59603 -26.96697 -24.76127 -23.81508 -23.50978 -21.82231 -20.84676 -19.38452 -18.45931 -18.12649 -17.33366 -17.01231 -16.51766 -16.48092 -16.12627 -15.78083 -15.46137 -15.09589 -14.57706 -14.44546 -14.21131 -13.78641 -13.69989 -13.56656 -13.36869 -13.21707 -13.04542 -12.82634 -12.71894 -12.59830 -12.49806 -12.32836 -12.18594 -12.16393 -12.00064 -11.88060 -11.61130 -11.39505 -11.33601 -11.13553 -10.69778 -10.55444 -9.81371 -9.26116 -8.18918 -6.31275 1.40192 1.42682 1.53813 1.58929 1.91577 2.41847 2.88538 3.13811 3.48740 3.74310 3.85508 3.99508 4.05836 4.08968 4.10692 4.25239 4.35600 4.42171 4.48715 4.56194 4.61857 4.65184 4.67161 4.74024 4.78801 4.79887 4.85911 4.89043 4.90294 4.99768 5.04053 5.12543 5.16545 5.28459 5.31760 5.35627 5.38849 5.55082 5.57235 5.77182 5.87444 6.01348 6.04644 6.24795 6.39202 6.87256 7.15021 7.38427 8.93506 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037044 B = 0.002700 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.670332 B =10366.104697 C =10766.577257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.139 3.861 3 H 0.070 0.930 4 C 0.078 3.922 5 H 0.023 0.977 6 C -0.146 4.146 7 N -0.536 5.536 8 C 0.019 3.981 9 C 0.040 3.960 10 C 0.103 3.897 11 N -0.611 5.611 12 C 0.510 3.490 13 O -0.590 6.590 14 C -0.125 4.125 15 C -0.095 4.095 16 C -0.094 4.094 17 C 0.019 3.981 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.258 1.258 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.020 0.980 35 H 0.113 0.887 36 H 0.028 0.972 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.040 0.960 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.061 0.939 45 H -0.017 1.017 46 H -0.016 1.016 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 -13.300 -24.763 31.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.031 4.031 5 H 0.041 0.959 6 C -0.204 4.204 7 N -0.261 5.261 8 C -0.129 4.129 9 C -0.088 4.088 10 C -0.018 4.018 11 N -0.344 5.344 12 C 0.300 3.700 13 O -0.471 6.471 14 C -0.165 4.165 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.018 4.018 18 C -0.579 4.579 19 H 0.085 0.915 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.182 1.182 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.038 0.962 35 H 0.131 0.869 36 H 0.046 0.954 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.002 0.998 46 H 0.002 0.998 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.630 -12.573 -24.662 30.856 hybrid contribution 1.591 0.510 0.824 1.863 sum -12.038 -12.063 -23.839 29.304 Atomic orbital electron populations 1.21960 0.92897 1.03338 1.01802 1.21302 0.95920 0.95756 0.83490 0.91156 1.21882 0.96591 0.89158 0.95464 0.95908 1.21993 1.02434 1.00552 0.95419 1.62002 1.58717 1.01259 1.04158 1.22541 0.98774 0.99948 0.91599 1.22560 0.96193 1.00093 0.89978 1.22145 1.03275 0.77596 0.98829 1.48439 1.56834 1.09781 1.19376 1.21280 0.76618 0.87293 0.84827 1.90671 1.58858 1.17297 1.80252 1.21693 1.02942 0.99133 0.92706 1.21244 0.99134 0.97553 0.95370 1.21437 0.99527 0.97871 0.94310 1.19054 0.94009 0.94677 0.94101 1.21756 1.36648 0.95169 1.04332 0.91472 1.26112 0.96342 0.95736 1.02284 1.70138 1.43672 1.09109 1.35028 0.85369 0.78920 0.78470 0.77811 1.19694 1.20953 1.18214 0.90424 0.94408 0.89978 0.90215 0.91982 0.90763 0.89874 0.89826 0.96156 0.86868 0.95351 0.89196 0.87347 0.86346 0.86611 0.94107 0.93962 0.91924 0.92022 0.99835 0.99757 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.69 71.98 0.63 -1.84 16 2 C 0.14 2.95 2.83 44.96 0.13 3.08 16 3 H 0.07 1.92 7.06 -2.39 -0.02 1.90 16 4 C 0.08 1.32 2.31 45.00 0.10 1.42 16 5 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 6 C -0.15 -1.78 8.24 71.98 0.59 -1.18 16 7 N -0.54 -7.16 4.23 -896.11 -3.79 -10.95 16 8 C 0.02 0.18 9.27 127.69 1.18 1.37 16 9 C 0.04 0.50 5.61 86.38 0.49 0.99 16 10 C 0.10 1.48 6.10 86.35 0.53 2.00 16 11 N -0.61 -13.69 2.70 -794.07 -2.15 -15.84 16 12 C 0.51 15.28 7.71 87.66 0.68 15.96 16 13 O -0.59 -23.64 15.43 -3.03 -0.05 -23.68 16 14 C -0.13 -3.32 4.07 29.85 0.12 -3.19 16 15 C -0.09 -3.57 4.50 30.59 0.14 -3.43 16 16 C -0.09 -3.91 5.15 30.59 0.16 -3.75 16 17 C 0.02 1.04 4.97 29.85 0.15 1.19 16 18 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 19 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 20 C -0.01 -0.46 5.46 84.66 0.46 0.01 16 21 N -0.94 -59.75 13.29 21.45 0.28 -59.47 16 22 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 26 H 0.08 1.22 7.06 -2.39 -0.02 1.21 16 27 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 1.15 6.36 -2.39 -0.02 1.14 16 29 H 0.08 0.86 6.35 -2.39 -0.02 0.85 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.71 6.14 -2.39 -0.01 0.70 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.68 5.72 -2.39 -0.01 0.67 16 34 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.11 0.89 8.11 -2.39 -0.02 0.87 16 36 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.09 1.11 7.60 -2.39 -0.02 1.09 16 38 H 0.11 1.23 6.02 -2.39 -0.01 1.22 16 39 H 0.12 2.51 8.00 -2.39 -0.02 2.49 16 40 H 0.12 2.46 7.66 -2.39 -0.02 2.45 16 41 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 42 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 45 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 46 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 47 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -76.34 360.29 2.82 -73.52 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.91 Total: 8.13 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 5.58 Total: -18.82 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -5.65 Total: -86.26 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.68 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -76.34 2.82 -73.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588664472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.970 kcal (2) G-P(sol) polarization free energy of solvation -76.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds