Wall clock time and date at job start Tue Mar 31 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.51089 * 2 1 4 4 C 1.53241 * 109.49232 * 120.06252 * 2 1 3 5 5 H 1.09007 * 109.78159 * 53.98919 * 4 2 1 6 6 C 1.52999 * 109.63207 * 293.50177 * 4 2 1 7 7 N 1.47080 * 108.52126 * 173.78927 * 4 2 1 8 8 C 1.34778 * 120.88035 * 128.84035 * 7 4 2 9 9 O 1.21274 * 119.99701 * 355.18600 * 8 7 4 10 10 C 1.50697 * 119.99516 * 175.18117 * 8 7 4 11 11 C 1.53009 * 109.46708 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47067 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47364 * 180.02562 * 12 11 10 14 14 C 1.50692 * 109.47290 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00317 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99976 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00052 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00042 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47447 * 89.99696 * 18 16 14 20 20 H 1.48502 * 109.47277 * 209.99911 * 18 16 14 21 21 H 1.48500 * 109.47195 * 329.99702 * 18 16 14 22 22 C 1.47085 * 118.23497 * 308.81732 * 7 4 2 23 23 C 1.53236 * 108.52055 * 51.18684 * 22 7 4 24 24 N 1.46891 * 109.49169 * 239.93111 * 2 1 3 25 25 C 1.46897 * 111.00275 * 52.79163 * 24 2 1 26 26 H 1.08997 * 109.47598 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47178 * 300.06585 * 1 2 3 28 28 H 1.08999 * 109.47000 * 60.06467 * 1 2 3 29 29 H 1.09000 * 109.47113 * 294.74976 * 6 4 2 30 30 H 1.09002 * 109.46975 * 54.75037 * 6 4 2 31 31 H 1.08994 * 109.46815 * 174.74715 * 6 4 2 32 32 H 1.08995 * 109.47916 * 300.00055 * 10 8 7 33 33 H 1.09001 * 109.46836 * 60.00655 * 10 8 7 34 34 H 1.08995 * 109.47168 * 300.00747 * 11 10 8 35 35 H 1.08993 * 109.46537 * 60.00573 * 11 10 8 36 36 H 1.09003 * 109.47922 * 300.00678 * 12 11 10 37 37 H 1.09004 * 109.46913 * 60.00335 * 12 11 10 38 38 H 1.08999 * 109.46472 * 300.00626 * 13 12 11 39 39 H 1.08996 * 109.46728 * 59.99960 * 13 12 11 40 40 H 0.97004 * 119.99727 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.62943 * 291.47615 * 22 7 4 42 42 H 1.09007 * 109.62332 * 170.89382 * 22 7 4 43 43 H 1.08995 * 109.49386 * 186.20594 * 23 22 7 44 44 H 1.09002 * 109.51746 * 66.13884 * 23 22 7 45 45 H 1.09003 * 109.47471 * 180.34590 * 25 24 2 46 46 H 1.09009 * 109.47055 * 300.34279 * 25 24 2 47 47 H 1.09003 * 109.47599 * 60.34083 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7237 1.2503 5 1 1.5959 -1.7168 1.3098 6 6 1.6711 0.0813 2.4976 7 7 3.5042 -0.8431 1.1555 8 6 4.2977 -0.4494 2.1713 9 8 3.8146 0.0905 3.1438 10 6 5.7851 -0.6802 2.0985 11 6 6.4472 -0.1435 3.3692 12 6 7.9572 -0.3784 3.2957 13 6 8.6193 0.1576 4.5667 14 6 10.1066 -0.0731 4.4939 15 1 10.5369 -0.5537 3.6276 16 6 10.9184 0.3301 5.5328 17 7 12.2166 0.1292 5.4692 18 14 10.1745 1.1619 7.0308 19 1 9.8140 0.1339 8.0400 20 1 11.1621 2.1043 7.6153 21 1 8.9558 1.9088 6.6281 22 6 4.0781 -1.4042 -0.0771 23 6 3.4866 -0.6536 -1.2750 24 7 2.0201 -0.6938 -1.1984 25 6 1.4140 -0.1359 -2.4146 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5149 0.8894 28 1 -0.3633 0.5128 -0.8906 29 1 2.2005 1.0340 2.4855 30 1 0.5964 0.2628 2.5071 31 1 1.9528 -0.4796 3.3887 32 1 5.9832 -1.7482 2.0084 33 1 6.1913 -0.1608 1.2305 34 1 6.2491 0.9245 3.4589 35 1 6.0410 -0.6625 4.2374 36 1 8.1550 -1.4466 3.2062 37 1 8.3637 0.1403 2.4274 38 1 8.4215 1.2258 4.6564 39 1 8.2127 -0.3613 5.4346 40 1 12.7877 0.4126 6.2003 41 1 3.8283 -2.4627 -0.1486 42 1 5.1611 -1.2805 -0.0660 43 1 3.8156 -1.1276 -2.1997 44 1 3.8234 0.3829 -1.2578 45 1 1.7895 -0.6717 -3.2864 46 1 0.3304 -0.2418 -2.3620 47 1 1.6723 0.9198 -2.4980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588664475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:04 Heat of formation + Delta-G solvation = -31.901730 kcal Electronic energy + Delta-G solvation = -22875.166458 eV Core-core repulsion = 19671.948980 eV Total energy + Delta-G solvation = -3203.217478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80213 -38.55283 -35.24028 -34.94411 -33.98777 -32.50427 -30.40988 -29.08110 -28.80764 -26.41566 -25.83132 -23.77738 -22.57150 -21.82849 -20.52027 -19.99920 -18.89998 -16.93909 -16.62924 -16.32067 -16.05285 -15.96290 -15.29230 -14.78941 -14.63899 -14.24006 -13.94414 -13.48773 -13.38921 -12.95626 -12.84019 -12.63169 -12.60207 -12.27140 -12.21682 -12.03967 -11.90765 -11.78401 -11.70515 -11.41243 -11.25797 -11.13224 -11.07057 -10.68620 -10.51729 -9.84707 -9.64077 -9.54299 -9.11560 -9.01318 -8.95069 -8.56451 -8.48303 -5.99598 -3.96945 2.66426 2.78828 3.36163 3.43059 3.44939 3.49231 4.31893 4.47106 4.51065 4.53183 4.70367 4.83801 4.89427 4.94634 5.07975 5.11158 5.16835 5.21303 5.26284 5.28292 5.32328 5.35466 5.40469 5.43360 5.54340 5.61587 5.63268 5.80429 5.83215 6.02545 6.06370 6.15391 6.21861 6.43560 6.49608 6.58715 6.65703 6.70209 6.83713 7.00717 7.33530 7.39768 7.52462 7.85999 8.22169 8.59469 9.05451 9.63888 11.13928 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034436 B = 0.002936 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.914751 B = 9534.544858 C =10125.617401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.045 0.955 4 C 0.154 3.846 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.620 5.620 8 C 0.515 3.485 9 O -0.529 6.529 10 C -0.140 4.140 11 C -0.105 4.105 12 C -0.102 4.102 13 C -0.015 4.015 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.265 1.265 22 C 0.111 3.889 23 C 0.039 3.961 24 N -0.539 5.539 25 C 0.022 3.978 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.941 -2.295 -16.437 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.039 4.039 3 H 0.063 0.937 4 C 0.050 3.950 5 H 0.093 0.907 6 C -0.195 4.195 7 N -0.355 5.355 8 C 0.305 3.695 9 O -0.405 6.405 10 C -0.180 4.180 11 C -0.143 4.143 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.012 4.012 23 C -0.090 4.090 24 N -0.264 5.264 25 C -0.126 4.126 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -25.160 -2.460 -15.770 29.795 hybrid contribution 0.080 1.202 0.501 1.305 sum -25.080 -1.258 -15.268 29.389 Atomic orbital electron populations 1.21949 0.93515 1.02898 1.02274 1.22092 0.95914 0.95821 0.90084 0.93672 1.21342 0.79536 0.99428 0.94644 0.90650 1.22245 0.99110 1.01665 0.96511 1.48319 1.06412 1.63936 1.16855 1.21035 0.89516 0.77190 0.81792 1.90738 1.75384 1.41701 1.32706 1.21844 0.90700 1.03404 1.02027 1.21477 0.96371 1.01325 0.95123 1.21473 0.91779 1.00611 1.00122 1.19572 0.96368 0.96012 0.93306 1.21187 0.90117 1.39103 1.05280 0.91118 1.25045 0.94716 0.95494 0.98381 1.69926 1.03659 1.48112 1.32874 0.86771 0.79336 0.79915 0.83259 1.20308 1.21477 1.18908 1.21849 0.98634 0.98092 0.82649 1.22515 0.87690 0.99673 0.99075 1.61970 1.06353 1.55659 1.02442 1.22437 1.00657 0.97463 0.92087 0.91499 0.91425 0.92146 0.91195 0.93676 0.90487 0.89051 0.89300 0.91889 0.91803 0.92882 0.92926 0.96664 0.97059 0.92831 0.90508 0.88750 0.89290 0.94237 0.91266 0.90745 0.95688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.51 37.16 0.32 -0.70 16 2 C 0.07 0.62 2.06 -67.59 -0.14 0.48 16 3 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.15 1.60 3.10 -67.49 -0.21 1.39 16 5 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.14 -1.59 7.50 37.16 0.28 -1.31 16 7 N -0.62 -6.87 3.01 -164.92 -0.50 -7.36 16 8 C 0.51 7.09 7.60 -10.99 -0.08 7.00 16 9 O -0.53 -8.90 11.49 5.56 0.06 -8.84 16 10 C -0.14 -1.82 4.13 -27.88 -0.12 -1.93 16 11 C -0.10 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.10 -2.03 5.15 -26.73 -0.14 -2.16 16 13 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 14 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 15 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 18 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 22 C 0.11 0.92 6.49 -3.60 -0.02 0.89 16 23 C 0.04 0.30 5.62 -3.70 -0.02 0.28 16 24 N -0.54 -4.35 4.73 -234.58 -1.11 -5.46 16 25 C 0.02 0.14 9.02 60.06 0.54 0.68 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.45 6.54 -51.93 -0.34 0.11 16 28 H 0.06 0.36 6.31 -51.93 -0.33 0.03 16 29 H 0.07 0.95 6.81 -51.93 -0.35 0.60 16 30 H 0.04 0.42 6.42 -51.93 -0.33 0.09 16 31 H 0.08 1.04 6.75 -51.93 -0.35 0.69 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.01 7.46 -51.93 -0.39 0.62 16 34 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.68 6.04 -51.92 -0.31 0.36 16 43 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 44 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 46 H 0.07 0.42 6.18 -51.92 -0.32 0.10 16 47 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -33.25 353.48 -8.93 -42.18 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -8.56 Total: -4.44 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.26 Total: -11.47 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: -0.83 Total: -40.58 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.06 Total: -8.84 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.25 -8.93 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588664475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.277 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds