Wall clock time and date at job start Tue Mar 31 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.64687 * 2 1 4 4 C 1.54603 * 110.72314 * 236.85221 * 2 1 3 5 5 C 1.54001 * 105.13694 * 219.68259 * 4 2 1 6 6 N 1.47898 * 107.05720 * 358.77431 * 5 4 2 7 7 C 1.46909 * 110.99593 * 145.84404 * 6 5 4 8 8 C 1.53000 * 109.46673 * 184.28863 * 7 6 5 9 9 N 1.46503 * 109.47083 * 185.14219 * 8 7 6 10 10 C 1.34776 * 120.00044 * 179.97438 * 9 8 7 11 11 O 1.21274 * 120.00413 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99746 * 180.02562 * 10 9 8 13 13 C 1.52996 * 109.46914 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47090 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47090 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46914 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99668 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99791 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00130 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99801 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47479 * 90.00059 * 20 18 16 22 22 H 1.48504 * 109.47127 * 210.00406 * 20 18 16 23 23 H 1.48498 * 109.47323 * 329.99737 * 20 18 16 24 24 C 1.48731 * 105.94752 * 25.20284 * 6 5 4 25 25 H 1.09002 * 109.46896 * 179.29809 * 1 2 3 26 26 H 1.09002 * 109.46664 * 59.29582 * 1 2 3 27 27 H 1.08999 * 109.46516 * 299.29960 * 1 2 3 28 28 H 1.08995 * 110.30691 * 338.59505 * 4 2 1 29 29 H 1.08997 * 110.30831 * 100.76828 * 4 2 1 30 30 H 1.09001 * 109.91444 * 118.12827 * 5 4 2 31 31 H 1.09002 * 109.91649 * 239.42037 * 5 4 2 32 32 H 1.08999 * 109.47052 * 304.28749 * 7 6 5 33 33 H 1.08996 * 109.47093 * 64.29133 * 7 6 5 34 34 H 1.08999 * 109.47395 * 305.14471 * 8 7 6 35 35 H 1.08998 * 109.47354 * 65.14911 * 8 7 6 36 36 H 0.97000 * 119.99626 * 0.02562 * 9 8 7 37 37 H 1.08999 * 109.47128 * 300.00263 * 12 10 9 38 38 H 1.08998 * 109.46841 * 60.00226 * 12 10 9 39 39 H 1.09009 * 109.47160 * 299.99791 * 13 12 10 40 40 H 1.08994 * 109.47151 * 59.99945 * 13 12 10 41 41 H 1.08999 * 109.46648 * 299.99627 * 14 13 12 42 42 H 1.08998 * 109.47145 * 59.99482 * 14 13 12 43 43 H 1.08999 * 109.47070 * 299.99368 * 15 14 13 44 44 H 1.08998 * 109.47549 * 59.99729 * 15 14 13 45 45 H 0.96999 * 120.00085 * 179.97438 * 19 18 16 46 46 H 1.09002 * 110.83567 * 202.57308 * 24 6 5 47 47 H 1.09000 * 110.58597 * 79.37967 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0770 -0.7907 -1.2107 5 6 3.2894 -1.5697 -0.6676 6 7 3.4318 -1.2105 0.7600 7 6 3.9212 -2.3525 1.5439 8 6 3.9539 -1.9767 3.0266 9 7 4.5562 -3.0695 3.7943 10 6 4.6905 -2.9601 5.1308 11 8 4.3123 -1.9571 5.6982 12 6 5.3106 -4.0841 5.9204 13 6 5.3431 -3.7083 7.4031 14 6 5.9732 -4.8492 8.2046 15 6 6.0052 -4.4737 9.6874 16 6 6.6253 -5.5977 10.4770 17 1 6.9624 -6.4906 9.9716 18 6 6.7622 -5.4859 11.8444 19 7 6.3512 -4.3988 12.4597 20 14 7.5315 -6.8788 12.8229 21 1 8.9994 -6.6718 12.9086 22 1 6.9539 -6.9007 14.1908 23 1 7.2524 -8.1714 12.1473 24 6 2.0783 -0.7925 1.2132 25 1 -0.3633 -1.0276 -0.0126 26 1 -0.3633 0.5248 -0.8836 27 1 -0.3632 0.5029 0.8962 28 1 1.3208 -1.4806 -1.5849 29 1 2.3895 -0.1064 -1.9995 30 1 3.1161 -2.6414 -0.7654 31 1 4.1887 -1.2849 -1.2137 32 1 3.2563 -3.2040 1.3994 33 1 4.9260 -2.6159 1.2136 34 1 4.5453 -1.0707 3.1589 35 1 2.9376 -1.8019 3.3797 36 1 4.8590 -3.8715 3.3404 37 1 4.7192 -4.9901 5.7884 38 1 6.3268 -4.2587 5.5670 39 1 5.9343 -2.8021 7.5354 40 1 4.3268 -3.5339 7.7561 41 1 5.3824 -5.7556 8.0724 42 1 6.9896 -5.0232 7.8514 43 1 6.5958 -3.5672 9.8200 44 1 4.9887 -4.3000 10.0403 45 1 6.4472 -4.3203 13.4218 46 1 2.1446 -0.1522 2.0929 47 1 1.4560 -1.6640 1.4164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588756126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:10 Heat of formation + Delta-G solvation = -68.587585 kcal Electronic energy + Delta-G solvation = -21275.146427 eV Core-core repulsion = 18070.338131 eV Total energy + Delta-G solvation = -3204.808296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.93451 -39.30937 -35.66405 -34.79071 -33.48241 -32.58455 -30.70272 -29.72587 -28.17960 -26.45905 -25.33368 -23.04694 -22.06941 -21.31282 -20.57925 -20.15754 -19.92131 -16.90751 -16.80466 -16.17138 -16.03294 -15.83562 -15.36744 -15.22339 -14.48389 -14.41098 -13.96113 -13.72707 -13.54491 -13.27465 -13.16822 -12.65327 -12.53284 -12.38395 -12.05995 -11.71874 -11.64060 -11.53938 -11.50210 -11.34633 -11.14310 -10.96419 -10.96030 -10.50984 -10.48236 -10.38036 -9.80148 -9.58327 -9.19576 -9.15582 -8.95648 -8.89971 -8.28289 -5.93025 -3.95489 2.76393 2.96306 3.35493 3.41392 3.44606 3.69840 4.11662 4.17289 4.42055 4.50727 4.58181 4.70203 4.75262 4.93603 4.99004 5.04782 5.06521 5.21991 5.23979 5.27436 5.35808 5.39631 5.42091 5.42439 5.51636 5.58256 5.64552 5.69491 5.72458 5.86389 5.90404 6.17365 6.28418 6.34212 6.39393 6.55579 6.58809 6.87443 7.05528 7.23045 7.44569 7.76718 7.93047 8.08641 8.29401 8.50372 9.12264 9.67964 11.18281 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.053444 B = 0.001914 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.786751 B =14625.593021 C =14935.272328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.084 0.916 4 C -0.128 4.128 5 C 0.037 3.963 6 N -0.515 5.515 7 C 0.037 3.963 8 C 0.121 3.879 9 N -0.740 5.740 10 C 0.512 3.488 11 O -0.534 6.534 12 C -0.138 4.138 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.034 3.966 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.087 0.913 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 5.267 -30.791 32.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.102 0.898 4 C -0.166 4.166 5 C -0.091 4.091 6 N -0.239 5.239 7 C -0.091 4.091 8 C -0.004 4.004 9 N -0.394 5.394 10 C 0.300 3.700 11 O -0.410 6.410 12 C -0.178 4.178 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.093 4.093 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.026 6.497 -30.122 32.110 hybrid contribution 0.035 -1.851 0.229 1.865 sum -8.991 4.646 -29.893 31.560 Atomic orbital electron populations 1.21784 0.94404 1.01901 1.02112 1.22080 0.95529 0.99935 0.94098 0.89768 1.22498 0.96967 0.99023 0.98105 1.22866 0.98983 0.98230 0.89049 1.64717 1.24069 1.32857 1.02287 1.22439 1.01291 0.92166 0.93240 1.21232 0.99069 0.90888 0.89169 1.46019 1.64669 1.20828 1.07848 1.21096 0.78213 0.89177 0.81550 1.90710 1.48733 1.31778 1.69735 1.21792 1.01726 0.96632 0.97652 1.21454 1.02219 0.99954 0.90533 1.21650 0.98712 0.95991 0.98440 1.19102 0.97214 0.96716 0.88764 1.21289 1.39693 1.02697 0.92167 0.92758 1.25047 0.95794 0.95765 0.98012 1.69975 1.47350 1.26903 1.09214 0.86607 0.79403 0.82632 0.79407 1.20719 1.21268 1.19952 1.23432 0.88627 0.98848 0.98440 0.92693 0.92354 0.92218 0.91346 0.90902 0.93652 0.90133 0.94051 0.89895 0.90624 0.91709 0.76758 0.89188 0.89113 0.91783 0.91824 0.93504 0.93471 0.96566 0.96579 0.93060 0.89508 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.15 37.16 0.34 -0.41 16 2 C -0.10 -0.60 3.65 -88.76 -0.32 -0.92 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -0.69 6.51 -25.37 -0.17 -0.86 16 5 C 0.04 0.23 6.70 -2.75 -0.02 0.21 16 6 N -0.51 -4.03 5.35 -230.27 -1.23 -5.26 16 7 C 0.04 0.27 4.96 -3.82 -0.02 0.26 16 8 C 0.12 1.19 5.35 -4.04 -0.02 1.17 16 9 N -0.74 -7.54 5.56 -60.29 -0.33 -7.87 16 10 C 0.51 7.30 7.83 -10.98 -0.09 7.21 16 11 O -0.53 -10.03 15.98 5.56 0.09 -9.94 16 12 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 13 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 14 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.03 0.25 4.82 -1.79 -0.01 0.24 16 25 H 0.05 0.28 8.13 -51.93 -0.42 -0.14 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.33 7.84 -51.93 -0.41 -0.07 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.26 7.67 -51.93 -0.40 -0.14 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.28 7.97 -51.93 -0.41 -0.13 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.71 7.19 -51.93 -0.37 0.33 16 36 H 0.40 2.79 8.47 -40.82 -0.35 2.44 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.25 8.10 -51.92 -0.42 0.83 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.09 0.71 7.79 -51.93 -0.40 0.30 16 47 H 0.05 0.35 7.93 -51.93 -0.41 -0.06 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -34.07 375.97 -10.42 -44.49 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -9.05 Total: -3.98 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -1.27 Total: -13.14 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: -0.83 Total: -40.14 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.07 -10.42 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588756126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.101 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds