Wall clock time and date at job start Tue Mar 31 2020 06:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.28839 * 2 1 4 4 C 1.54263 * 110.32143 * 122.12379 * 2 1 3 5 5 C 1.54381 * 105.05868 * 118.99796 * 4 2 1 6 6 N 1.48563 * 104.59714 * 23.85293 * 5 4 2 7 7 C 1.46897 * 111.00393 * 200.96015 * 6 5 4 8 8 C 1.52992 * 109.47386 * 174.69054 * 7 6 5 9 9 N 1.46504 * 109.47198 * 174.76405 * 8 7 6 10 10 C 1.34771 * 119.99925 * 180.02562 * 9 8 7 11 11 O 1.21289 * 120.00448 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99932 * 179.97438 * 10 9 8 13 13 C 1.53004 * 109.47028 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46999 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47337 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47622 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99788 * 0.02562 * 16 15 14 18 18 C 1.37868 * 120.00346 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00176 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00121 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47169 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47467 * 120.00229 * 20 18 16 23 23 H 1.48508 * 109.47169 * 240.00131 * 20 18 16 24 24 C 1.48566 * 104.21991 * 320.51787 * 6 5 4 25 25 H 1.08997 * 109.47430 * 300.70081 * 1 2 3 26 26 H 1.08998 * 109.47236 * 60.70291 * 1 2 3 27 27 H 1.09002 * 109.47327 * 180.70115 * 1 2 3 28 28 H 1.09005 * 110.32426 * 237.89148 * 4 2 1 29 29 H 1.08999 * 110.32913 * 0.02562 * 4 2 1 30 30 H 1.09005 * 110.41474 * 142.63046 * 5 4 2 31 31 H 1.08997 * 110.41521 * 265.07350 * 5 4 2 32 32 H 1.09004 * 109.47209 * 294.69501 * 7 6 5 33 33 H 1.09002 * 109.47081 * 54.68818 * 7 6 5 34 34 H 1.08997 * 109.47169 * 294.76156 * 8 7 6 35 35 H 1.09001 * 109.47418 * 54.76467 * 8 7 6 36 36 H 0.96999 * 119.99684 * 359.97438 * 9 8 7 37 37 H 1.08993 * 109.47512 * 299.99934 * 12 10 9 38 38 H 1.09004 * 109.47001 * 60.00319 * 12 10 9 39 39 H 1.08997 * 109.47445 * 300.00067 * 13 12 10 40 40 H 1.09004 * 109.46820 * 60.00391 * 13 12 10 41 41 H 1.08997 * 109.46905 * 300.00187 * 14 13 12 42 42 H 1.09004 * 109.47187 * 60.00405 * 14 13 12 43 43 H 1.09000 * 109.46935 * 300.00635 * 15 14 13 44 44 H 1.09004 * 109.46707 * 60.00043 * 15 14 13 45 45 H 0.97000 * 120.00669 * 179.97438 * 19 18 16 46 46 H 1.08996 * 110.40828 * 280.70523 * 24 6 5 47 47 H 1.08997 * 110.41155 * 158.25998 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0657 -0.7692 1.2251 5 6 2.8827 -1.9401 0.6378 6 7 3.2721 -1.4807 -0.7204 7 6 3.6119 -2.6194 -1.5840 8 6 3.8782 -2.1198 -3.0053 9 7 4.3380 -3.2350 -3.8368 10 6 4.6359 -3.0295 -5.1350 11 8 4.5230 -1.9215 -5.6152 12 6 5.1095 -4.1765 -5.9901 13 6 5.3757 -3.6769 -7.4116 14 6 5.8558 -4.8416 -8.2799 15 6 6.1226 -4.3419 -9.7012 16 6 6.5961 -5.4889 -10.5564 17 1 6.6963 -6.4757 -10.1290 18 6 6.9014 -5.2786 -11.8843 19 7 6.7799 -4.0769 -12.4046 20 14 7.4877 -6.7005 -12.9444 21 1 7.5394 -7.9390 -12.1269 22 1 6.5476 -6.8936 -14.0776 23 1 8.8430 -6.3990 -13.4715 24 6 2.0683 -0.7707 -1.2245 25 1 -0.3634 0.5247 0.8836 26 1 -0.3633 0.5029 -0.8962 27 1 -0.3634 -1.0276 0.0126 28 1 2.7067 -0.1244 1.8264 29 1 1.2387 -1.1472 1.8262 30 1 3.7689 -2.1273 1.2443 31 1 2.2682 -2.8380 0.5737 32 1 4.5041 -3.1136 -1.1994 33 1 2.7821 -3.3261 -1.5967 34 1 2.9595 -1.7091 -3.4242 35 1 4.6445 -1.3450 -2.9806 36 1 4.4287 -4.1211 -3.4527 37 1 6.0280 -4.5872 -5.5710 38 1 4.3433 -4.9514 -6.0153 39 1 4.4569 -3.2665 -7.8306 40 1 6.1417 -2.9018 -7.3868 41 1 6.7744 -5.2523 -7.8611 42 1 5.0895 -5.6164 -8.3047 43 1 5.2042 -3.9308 -10.1202 44 1 6.8891 -3.5673 -9.6761 45 1 6.9951 -3.9288 -13.3388 46 1 1.3264 -1.4857 -1.5799 47 1 2.3413 -0.0775 -2.0201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588756130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:13 Heat of formation + Delta-G solvation = -68.515713 kcal Electronic energy + Delta-G solvation = -21279.659444 eV Core-core repulsion = 18074.854264 eV Total energy + Delta-G solvation = -3204.805179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.94659 -39.32621 -35.67981 -34.79312 -33.48521 -32.58591 -30.65256 -29.71825 -28.19226 -26.44398 -25.33651 -23.11014 -22.09158 -21.42965 -20.38463 -20.17372 -19.92208 -16.84294 -16.83521 -16.20329 -16.07473 -15.87993 -15.34490 -15.20348 -14.56877 -14.41162 -13.98503 -13.65586 -13.51311 -13.25672 -13.00257 -12.76918 -12.58457 -12.32351 -12.07214 -11.76899 -11.64796 -11.55129 -11.49668 -11.31200 -11.15244 -10.97530 -10.92500 -10.50876 -10.46647 -10.38366 -9.80240 -9.58658 -9.19701 -9.15831 -8.97528 -8.94526 -8.28781 -5.93298 -3.95741 2.76206 2.96581 3.34432 3.41524 3.45539 3.70943 4.12281 4.17573 4.44822 4.50603 4.57741 4.70476 4.76211 4.92654 4.98301 5.05098 5.06338 5.19454 5.21895 5.29267 5.35675 5.39519 5.41439 5.42279 5.53285 5.58591 5.63127 5.68477 5.73122 5.85721 5.90287 6.17262 6.27969 6.34008 6.35200 6.54028 6.58512 6.87346 7.05435 7.22932 7.44410 7.76803 7.92857 8.08440 8.29254 8.50245 9.12272 9.67856 11.18054 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.054861 B = 0.001908 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.254712 B =14671.693002 C =14942.165894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.121 4.121 5 C 0.033 3.967 6 N -0.507 5.507 7 C 0.035 3.965 8 C 0.121 3.879 9 N -0.739 5.739 10 C 0.512 3.488 11 O -0.534 6.534 12 C -0.138 4.138 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.031 3.969 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.399 0.601 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.259 0.741 46 H 0.047 0.953 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.190 3.955 30.409 32.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.159 4.159 5 C -0.095 4.095 6 N -0.232 5.232 7 C -0.094 4.094 8 C -0.003 4.003 9 N -0.394 5.394 10 C 0.300 3.700 11 O -0.410 6.410 12 C -0.178 4.178 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.097 4.097 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.232 0.768 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.771 5.209 29.892 32.198 hybrid contribution -0.323 -1.764 -0.479 1.856 sum -11.094 3.445 29.413 31.624 Atomic orbital electron populations 1.21868 0.94552 1.01809 1.02060 1.21893 0.95566 1.00057 0.94229 0.90086 1.22396 0.99284 0.96836 0.97400 1.23126 0.99127 0.96774 0.90505 1.65363 1.33506 1.22233 1.02052 1.22430 1.01291 0.92735 0.92953 1.21223 1.00585 0.89917 0.88611 1.46017 1.70019 1.12407 1.10911 1.21100 0.76419 0.91000 0.81524 1.90714 1.51882 1.25722 1.72648 1.21792 1.02531 0.96307 0.97169 1.21454 1.02171 0.99322 0.91214 1.21650 0.99247 0.95956 0.97939 1.19108 0.96957 0.96414 0.89354 1.21326 1.44101 0.95459 0.94881 0.92700 1.25047 0.95871 0.95571 0.98153 1.69985 1.49228 1.20741 1.13501 0.86554 0.78366 0.82705 0.80461 1.19799 1.21070 1.21063 1.23297 0.91007 0.97649 0.97732 0.92355 0.92330 0.92754 0.90921 0.91134 0.89944 0.93739 0.89833 0.93999 0.91721 0.90625 0.76753 0.89109 0.89186 0.91830 0.91777 0.93472 0.93499 0.96580 0.96555 0.93114 0.93438 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.91 37.16 0.33 -0.42 16 2 C -0.10 -0.60 3.65 -89.24 -0.33 -0.93 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -0.66 6.65 -25.35 -0.17 -0.83 16 5 C 0.03 0.20 6.49 -2.18 -0.01 0.19 16 6 N -0.51 -3.96 5.45 -229.97 -1.25 -5.22 16 7 C 0.03 0.25 5.05 -3.83 -0.02 0.23 16 8 C 0.12 1.20 5.38 -4.04 -0.02 1.17 16 9 N -0.74 -7.53 5.56 -60.29 -0.33 -7.87 16 10 C 0.51 7.30 7.83 -10.99 -0.09 7.21 16 11 O -0.53 -10.04 15.98 5.55 0.09 -9.95 16 12 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 13 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 14 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -15.13 9.11 -34.45 -0.31 -15.44 16 17 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.03 0.23 4.88 -2.18 -0.01 0.22 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.32 7.71 -51.93 -0.40 -0.08 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.26 7.89 -51.93 -0.41 -0.15 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.04 0.28 7.97 -51.93 -0.41 -0.13 16 34 H 0.06 0.71 7.21 -51.93 -0.37 0.33 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 2.78 8.47 -40.82 -0.35 2.44 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.05 0.35 7.70 -51.93 -0.40 -0.05 16 47 H 0.09 0.70 7.78 -51.93 -0.40 0.29 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -34.13 375.84 -10.45 -44.58 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -9.05 Total: -4.05 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -1.28 Total: -13.19 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.85 Total: -40.10 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.13 -10.45 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588756130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.933 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds