Wall clock time and date at job start Tue Mar 31 2020 06:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52898 * 1 3 3 H 1.10840 * 107.03529 * 2 1 4 4 C 1.52759 * 110.21396 * 243.80350 * 2 1 3 5 5 C 1.53130 * 109.59192 * 284.43773 * 4 2 1 6 6 H 1.08658 * 110.40326 * 60.47586 * 5 4 2 7 7 N 1.47137 * 109.26296 * 180.59888 * 5 4 2 8 8 C 1.46954 * 110.99626 * 56.18079 * 7 5 4 9 9 C 1.53051 * 109.36243 * 183.16456 * 8 7 5 10 10 N 1.46955 * 109.38092 * 301.62870 * 9 8 7 11 11 C 1.46905 * 111.00020 * 183.17211 * 10 9 8 12 12 C 1.50697 * 109.47318 * 295.18718 * 11 10 9 13 13 H 1.08001 * 120.00352 * 4.98530 * 12 11 10 14 14 C 1.37881 * 119.99690 * 184.98188 * 12 11 10 15 15 N 1.31512 * 120.00319 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99788 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46963 * 60.00190 * 16 14 12 18 18 H 1.48501 * 109.46740 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46998 * 300.00460 * 16 14 12 20 20 C 1.46963 * 110.87902 * 59.31496 * 10 9 8 21 21 C 1.46957 * 110.99559 * 180.02562 * 7 5 4 22 22 C 1.52993 * 108.27140 * 299.58892 * 5 4 2 23 23 C 1.52529 * 110.30898 * 58.62824 * 22 5 4 24 24 H 1.10984 * 107.09448 * 194.79458 * 23 22 5 25 25 C 1.53081 * 109.98464 * 79.21550 * 23 22 5 26 26 O 1.40792 * 113.33637 * 313.50205 * 23 22 5 27 27 H 1.08999 * 109.46990 * 176.19276 * 1 2 3 28 28 H 1.09001 * 109.47358 * 296.19428 * 1 2 3 29 29 H 1.09004 * 109.46757 * 56.19442 * 1 2 3 30 30 H 1.09111 * 109.63336 * 164.32247 * 4 2 1 31 31 H 1.09120 * 109.58561 * 44.47526 * 4 2 1 32 32 H 1.09007 * 109.47395 * 63.20757 * 8 7 5 33 33 H 1.09000 * 109.51212 * 303.14064 * 8 7 5 34 34 H 1.09002 * 109.48915 * 181.65417 * 9 8 7 35 35 H 1.08998 * 109.48810 * 61.60847 * 9 8 7 36 36 H 1.08999 * 109.46560 * 55.18802 * 11 10 9 37 37 H 1.08991 * 109.47165 * 175.18046 * 11 10 9 38 38 H 0.96995 * 120.00366 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.48811 * 60.63785 * 20 10 9 40 40 H 1.08991 * 109.48978 * 180.68832 * 20 10 9 41 41 H 1.09002 * 109.49040 * 56.84758 * 21 7 5 42 42 H 1.09002 * 109.49092 * 296.77978 * 21 7 5 43 43 H 1.09241 * 109.33364 * 179.19458 * 22 5 4 44 44 H 1.09269 * 109.29413 * 298.13824 * 22 5 4 45 45 H 1.08997 * 109.47170 * 293.31618 * 25 23 22 46 46 H 1.08999 * 109.47291 * 53.31223 * 25 23 22 47 47 H 1.09004 * 109.47131 * 173.31676 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5290 0.0000 0.0000 3 1 1.8537 1.0598 0.0000 4 6 2.0568 -0.6328 -1.2863 5 6 1.8967 -2.1540 -1.2134 6 1 0.8490 -2.4197 -1.1019 7 7 2.4202 -2.7569 -2.4492 8 6 3.8181 -2.3641 -2.6756 9 6 4.2993 -2.9457 -4.0070 10 7 4.1642 -4.4087 -3.9774 11 6 4.6868 -5.0108 -5.2113 12 6 3.8447 -4.5705 -6.3809 13 1 3.0558 -3.8472 -6.2365 14 6 4.0815 -5.0911 -7.6355 15 7 5.0418 -5.9722 -7.8114 16 14 3.0372 -4.5459 -9.0852 17 1 3.1779 -3.0795 -9.2729 18 1 3.4896 -5.2483 -10.3130 19 1 1.6137 -4.8769 -8.8221 20 6 2.7661 -4.8011 -3.7513 21 6 2.2844 -4.2199 -2.4199 22 6 2.7048 -2.6647 -0.0189 23 6 2.2192 -2.0071 1.2688 24 1 2.9925 -2.1946 2.0426 25 6 0.9375 -2.6894 1.7536 26 8 2.0539 -0.6135 1.1555 27 1 -0.3633 -1.0254 -0.0682 28 1 -0.3634 0.4536 0.9221 29 1 -0.3633 0.5718 -0.8540 30 1 3.1120 -0.3846 -1.4108 31 1 1.4948 -0.2500 -2.1397 32 1 4.4390 -2.7473 -1.8657 33 1 3.8903 -1.2770 -2.7064 34 1 5.3449 -2.6802 -4.1631 35 1 3.6962 -2.5411 -4.8198 36 1 5.7172 -4.6896 -5.3640 37 1 4.6534 -6.0970 -5.1280 38 1 5.2086 -6.3382 -8.6940 39 1 2.1453 -4.4175 -4.5609 40 1 2.6938 -5.8882 -3.7213 41 1 1.2387 -4.4851 -2.2640 42 1 2.8876 -4.6249 -1.6073 43 1 2.5910 -3.7484 0.0580 44 1 3.7615 -2.4323 -0.1720 45 1 0.1322 -2.4952 1.0451 46 1 1.1039 -3.7639 1.8287 47 1 0.6635 -2.2948 2.7321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590168794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:50 Heat of formation + Delta-G solvation = -40.630010 kcal Electronic energy + Delta-G solvation = -23938.590408 eV Core-core repulsion = 20734.994443 eV Total energy + Delta-G solvation = -3203.595965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.41852 -38.35584 -35.58960 -33.59317 -32.79424 -31.70595 -30.41762 -29.40379 -27.17861 -26.48439 -25.01017 -23.27434 -22.89319 -22.42092 -21.32115 -19.30638 -18.06714 -17.03563 -16.32693 -16.00005 -15.41763 -15.05842 -14.97041 -14.43352 -14.34525 -14.17435 -13.98135 -13.79852 -13.34407 -12.99880 -12.83536 -12.67404 -12.42213 -12.38163 -11.91341 -11.84235 -11.48845 -11.17810 -11.06473 -11.02280 -10.90384 -10.67376 -10.55070 -10.49148 -10.32402 -10.08830 -10.01826 -9.78004 -9.54922 -9.48953 -8.42009 -7.99897 -7.15615 -6.01456 -4.10440 3.29746 3.34437 3.37378 3.48278 4.08462 4.41852 4.54431 4.57170 4.77370 4.81979 4.95970 5.05560 5.10144 5.18693 5.26667 5.28867 5.33663 5.39543 5.44189 5.55998 5.62649 5.70093 5.71594 5.76685 5.83474 5.88858 5.90550 5.95714 6.01889 6.04724 6.10614 6.17399 6.23224 6.36899 6.63245 6.78792 6.88494 7.22484 7.32484 7.41369 7.53189 7.59346 7.91204 8.06795 8.29858 8.31220 9.00107 9.56352 11.03597 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.003827 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.051339 B = 7314.857588 C = 7632.544711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.102 3.898 3 H 0.091 0.909 4 C -0.147 4.147 5 C 0.088 3.912 6 H 0.082 0.918 7 N -0.528 5.528 8 C 0.053 3.947 9 C 0.063 3.937 10 N -0.543 5.543 11 C 0.187 3.813 12 C -0.548 4.548 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.065 3.935 21 C 0.057 3.943 22 C -0.186 4.186 23 C 0.107 3.893 24 H 0.087 0.913 25 C -0.180 4.180 26 O -0.381 6.381 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.026 0.974 37 H 0.034 0.966 38 H 0.262 0.738 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.456 9.248 17.328 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.044 3.956 3 H 0.109 0.891 4 C -0.185 4.185 5 C -0.021 4.021 6 H 0.100 0.900 7 N -0.252 5.252 8 C -0.075 4.075 9 C -0.066 4.066 10 N -0.267 5.267 11 C 0.062 3.938 12 C -0.587 4.587 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.063 4.063 21 C -0.071 4.071 22 C -0.225 4.225 23 C 0.049 3.951 24 H 0.104 0.896 25 C -0.237 4.237 26 O -0.300 6.300 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.297 9.213 17.295 20.910 hybrid contribution -0.672 -0.068 -1.273 1.441 sum -7.969 9.145 16.022 20.096 Atomic orbital electron populations 1.22456 0.96508 1.02477 1.02242 1.21863 0.92847 0.96260 0.84582 0.89145 1.22316 1.02705 0.95315 0.98146 1.21593 0.98739 0.94029 0.87739 0.89993 1.62474 1.20027 1.09619 1.33041 1.22326 0.87723 0.99321 0.98114 1.21933 1.00000 0.89777 0.94843 1.62691 1.17407 1.07517 1.39128 1.19723 0.95074 0.95294 0.83749 1.21730 1.17803 1.25249 0.93934 0.92381 1.24960 0.95158 0.94811 0.98834 1.69932 1.30773 1.29271 1.23140 0.86704 0.80789 0.78844 0.81968 1.20266 1.21246 1.20267 1.21906 0.90734 0.99034 0.94673 1.22245 0.99672 0.86674 0.98493 1.22855 1.01762 1.01670 0.96231 1.21722 0.96573 0.80377 0.96469 0.89552 1.22506 0.98804 1.00683 1.01731 1.86463 1.83293 1.20949 1.39319 0.92373 0.92128 0.91526 0.90760 0.89879 0.94520 0.91072 0.91553 0.93562 0.95552 0.94830 0.92788 0.93291 0.91445 0.91536 0.94514 0.90449 0.90804 0.92336 0.91733 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.26 37.11 0.34 -1.23 16 2 C 0.10 1.02 3.41 -26.91 -0.09 0.92 16 3 H 0.09 0.81 8.28 -50.87 -0.42 0.39 16 4 C -0.15 -1.61 4.48 -26.79 -0.12 -1.73 16 5 C 0.09 1.06 2.25 -67.52 -0.15 0.91 16 6 H 0.08 0.99 6.62 -52.12 -0.34 0.65 16 7 N -0.53 -7.95 4.74 -226.37 -1.07 -9.02 16 8 C 0.05 0.83 4.79 -3.77 -0.02 0.81 16 9 C 0.06 1.24 5.32 -3.77 -0.02 1.22 16 10 N -0.54 -11.71 4.92 -235.91 -1.16 -12.87 16 11 C 0.19 4.85 5.14 -4.97 -0.03 4.82 16 12 C -0.55 -15.11 7.66 -34.44 -0.26 -15.37 16 13 H 0.06 1.61 5.82 -52.49 -0.31 1.30 16 14 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 15 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 16 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.07 1.29 5.24 -3.76 -0.02 1.27 16 21 C 0.06 0.90 5.17 -3.77 -0.02 0.88 16 22 C -0.19 -2.10 4.11 -26.98 -0.11 -2.21 16 23 C 0.11 1.09 3.41 -26.93 -0.09 1.00 16 24 H 0.09 0.83 8.29 -50.79 -0.42 0.41 16 25 C -0.18 -1.61 9.35 37.20 0.35 -1.26 16 26 O -0.38 -4.30 9.75 -34.06 -0.33 -4.64 16 27 H 0.06 0.53 5.36 -51.93 -0.28 0.26 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.85 6.22 -51.87 -0.32 0.53 16 31 H 0.08 0.92 8.08 -51.86 -0.42 0.50 16 32 H 0.04 0.58 6.45 -51.93 -0.33 0.24 16 33 H 0.07 1.01 6.03 -51.93 -0.31 0.70 16 34 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 35 H 0.05 1.01 6.78 -51.93 -0.35 0.66 16 36 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.05 1.08 6.61 -51.93 -0.34 0.74 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.57 6.55 -51.93 -0.34 0.23 16 43 H 0.08 0.88 6.39 -51.79 -0.33 0.55 16 44 H 0.07 0.91 6.37 -51.78 -0.33 0.58 16 45 H 0.06 0.54 5.73 -51.93 -0.30 0.24 16 46 H 0.06 0.53 8.02 -51.93 -0.42 0.11 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -29.03 339.60 -10.16 -39.19 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.09 Total: -0.48 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -0.34 Total: -8.23 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -1.50 Total: -47.50 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.33 Total: -4.64 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.03 -10.16 -39.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590168794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.442 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds