Wall clock time and date at job start Tue Mar 31 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52898 * 1 3 3 H 1.10840 * 107.03529 * 2 1 4 4 C 1.52759 * 110.21396 * 243.80350 * 2 1 3 5 5 C 1.53130 * 109.59192 * 284.43773 * 4 2 1 6 6 H 1.08658 * 110.40326 * 60.47586 * 5 4 2 7 7 N 1.47137 * 109.26296 * 180.59888 * 5 4 2 8 8 C 1.46954 * 110.99626 * 56.18079 * 7 5 4 9 9 C 1.53051 * 109.36243 * 183.16456 * 8 7 5 10 10 N 1.46955 * 109.38092 * 301.62870 * 9 8 7 11 11 C 1.46905 * 111.00020 * 183.17211 * 10 9 8 12 12 C 1.50697 * 109.47318 * 295.18718 * 11 10 9 13 13 H 1.08001 * 120.00352 * 4.98530 * 12 11 10 14 14 C 1.37881 * 119.99690 * 184.98188 * 12 11 10 15 15 N 1.31512 * 120.00319 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99788 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46963 * 60.00190 * 16 14 12 18 18 H 1.48501 * 109.46740 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46998 * 300.00460 * 16 14 12 20 20 C 1.46963 * 110.87902 * 59.31496 * 10 9 8 21 21 C 1.46957 * 110.99559 * 180.02562 * 7 5 4 22 22 C 1.52993 * 108.27140 * 299.58892 * 5 4 2 23 23 C 1.52529 * 110.30898 * 58.62824 * 22 5 4 24 24 H 1.10984 * 107.09448 * 194.79458 * 23 22 5 25 25 C 1.53081 * 109.98464 * 79.21550 * 23 22 5 26 26 O 1.40792 * 113.33637 * 313.50205 * 23 22 5 27 27 H 1.08999 * 109.46990 * 176.19276 * 1 2 3 28 28 H 1.09001 * 109.47358 * 296.19428 * 1 2 3 29 29 H 1.09004 * 109.46757 * 56.19442 * 1 2 3 30 30 H 1.09111 * 109.63336 * 164.32247 * 4 2 1 31 31 H 1.09120 * 109.58561 * 44.47526 * 4 2 1 32 32 H 1.09007 * 109.47395 * 63.20757 * 8 7 5 33 33 H 1.09000 * 109.51212 * 303.14064 * 8 7 5 34 34 H 1.09002 * 109.48915 * 181.65417 * 9 8 7 35 35 H 1.08998 * 109.48810 * 61.60847 * 9 8 7 36 36 H 1.08999 * 109.46560 * 55.18802 * 11 10 9 37 37 H 1.08991 * 109.47165 * 175.18046 * 11 10 9 38 38 H 0.96995 * 120.00366 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.48811 * 60.63785 * 20 10 9 40 40 H 1.08991 * 109.48978 * 180.68832 * 20 10 9 41 41 H 1.09002 * 109.49040 * 56.84758 * 21 7 5 42 42 H 1.09002 * 109.49092 * 296.77978 * 21 7 5 43 43 H 1.09241 * 109.33364 * 179.19458 * 22 5 4 44 44 H 1.09269 * 109.29413 * 298.13824 * 22 5 4 45 45 H 1.08997 * 109.47170 * 293.31618 * 25 23 22 46 46 H 1.08999 * 109.47291 * 53.31223 * 25 23 22 47 47 H 1.09004 * 109.47131 * 173.31676 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5290 0.0000 0.0000 3 1 1.8537 1.0598 0.0000 4 6 2.0568 -0.6328 -1.2863 5 6 1.8967 -2.1540 -1.2134 6 1 0.8490 -2.4197 -1.1019 7 7 2.4202 -2.7569 -2.4492 8 6 3.8181 -2.3641 -2.6756 9 6 4.2993 -2.9457 -4.0070 10 7 4.1642 -4.4087 -3.9774 11 6 4.6868 -5.0108 -5.2113 12 6 3.8447 -4.5705 -6.3809 13 1 3.0558 -3.8472 -6.2365 14 6 4.0815 -5.0911 -7.6355 15 7 5.0418 -5.9722 -7.8114 16 14 3.0372 -4.5459 -9.0852 17 1 3.1779 -3.0795 -9.2729 18 1 3.4896 -5.2483 -10.3130 19 1 1.6137 -4.8769 -8.8221 20 6 2.7661 -4.8011 -3.7513 21 6 2.2844 -4.2199 -2.4199 22 6 2.7048 -2.6647 -0.0189 23 6 2.2192 -2.0071 1.2688 24 1 2.9925 -2.1946 2.0426 25 6 0.9375 -2.6894 1.7536 26 8 2.0539 -0.6135 1.1555 27 1 -0.3633 -1.0254 -0.0682 28 1 -0.3634 0.4536 0.9221 29 1 -0.3633 0.5718 -0.8540 30 1 3.1120 -0.3846 -1.4108 31 1 1.4948 -0.2500 -2.1397 32 1 4.4390 -2.7473 -1.8657 33 1 3.8903 -1.2770 -2.7064 34 1 5.3449 -2.6802 -4.1631 35 1 3.6962 -2.5411 -4.8198 36 1 5.7172 -4.6896 -5.3640 37 1 4.6534 -6.0970 -5.1280 38 1 5.2086 -6.3382 -8.6940 39 1 2.1453 -4.4175 -4.5609 40 1 2.6938 -5.8882 -3.7213 41 1 1.2387 -4.4851 -2.2640 42 1 2.8876 -4.6249 -1.6073 43 1 2.5910 -3.7484 0.0580 44 1 3.7615 -2.4323 -0.1720 45 1 0.1322 -2.4952 1.0451 46 1 1.1039 -3.7639 1.8287 47 1 0.6635 -2.2948 2.7321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590168794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:49 Heat of formation + Delta-G solvation = -60.561528 kcal Electronic energy + Delta-G solvation = -23939.454703 eV Core-core repulsion = 20734.994443 eV Total energy + Delta-G solvation = -3204.460260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40479 -39.65894 -37.04571 -34.68684 -34.35828 -32.99873 -31.84300 -30.46764 -28.82409 -27.29734 -26.70703 -24.56208 -24.17573 -23.56839 -22.77893 -20.75870 -19.13826 -18.39158 -17.95116 -16.97802 -16.81531 -16.39885 -16.00260 -15.88645 -15.68426 -15.40817 -15.17791 -14.97837 -14.63632 -14.62261 -13.85562 -13.66018 -13.56544 -13.47871 -13.20135 -13.12132 -12.88168 -12.79884 -12.45645 -12.35891 -12.23128 -12.17782 -12.01984 -11.84846 -11.69306 -11.53043 -11.41205 -11.36406 -10.87101 -10.61554 -10.34221 -9.22719 -9.00164 -8.16381 -6.36041 1.36160 1.37529 1.45960 2.36603 2.68638 2.95492 3.08211 3.36752 3.67491 3.74559 3.91207 4.00740 4.02717 4.16556 4.25015 4.27027 4.37944 4.39750 4.49246 4.53278 4.54313 4.60995 4.67016 4.70129 4.82161 4.86417 4.95087 4.96936 5.02720 5.06027 5.09397 5.14125 5.18211 5.23385 5.23842 5.26941 5.32161 5.38851 5.42595 5.72214 6.01748 6.10118 6.12637 6.29811 6.51448 6.81714 6.84426 7.35362 8.85975 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030726 B = 0.003827 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.051339 B = 7314.857588 C = 7632.544711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.102 3.898 3 H 0.102 0.898 4 C -0.143 4.143 5 C 0.091 3.909 6 H 0.088 0.912 7 N -0.539 5.539 8 C 0.067 3.933 9 C 0.065 3.935 10 N -0.542 5.542 11 C 0.200 3.800 12 C -0.555 4.555 13 H 0.055 0.945 14 C 0.013 3.987 15 N -0.927 5.927 16 Si 0.957 3.043 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.270 1.270 20 C 0.067 3.933 21 C 0.069 3.931 22 C -0.179 4.179 23 C 0.106 3.894 24 H 0.093 0.907 25 C -0.176 4.176 26 O -0.393 6.393 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.002 0.998 37 H 0.006 0.994 38 H 0.265 0.735 39 H 0.023 0.977 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.020 10.520 18.433 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.044 3.956 3 H 0.119 0.881 4 C -0.181 4.181 5 C -0.017 4.017 6 H 0.106 0.894 7 N -0.263 5.263 8 C -0.061 4.061 9 C -0.064 4.064 10 N -0.266 5.266 11 C 0.073 3.927 12 C -0.594 4.594 13 H 0.073 0.927 14 C -0.187 4.187 15 N -0.567 5.567 16 Si 0.782 3.218 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.195 1.195 20 C -0.062 4.062 21 C -0.059 4.059 22 C -0.218 4.218 23 C 0.048 3.952 24 H 0.111 0.889 25 C -0.233 4.233 26 O -0.313 6.313 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.020 0.980 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.872 10.499 18.425 22.988 hybrid contribution -0.164 -0.459 -1.576 1.650 sum -9.037 10.040 16.849 21.595 Atomic orbital electron populations 1.22420 0.95535 1.02436 1.02894 1.21943 0.93566 0.96550 0.83550 0.88067 1.22290 1.02483 0.94423 0.98907 1.21626 0.98863 0.94607 0.86566 0.89422 1.62442 1.19429 1.09150 1.35269 1.22160 0.88283 1.00117 0.95546 1.21960 0.99563 0.88302 0.96584 1.62627 1.18695 1.08793 1.36435 1.19385 0.93925 0.93807 0.85547 1.21918 1.17724 1.25043 0.94711 0.92714 1.25807 0.96352 0.94802 1.01726 1.70053 1.32291 1.30359 1.23958 0.85625 0.79140 0.78600 0.78431 1.19569 1.20564 1.19546 1.21921 0.89024 0.98928 0.96321 1.22096 1.00809 0.87172 0.95810 1.22783 1.00898 1.01725 0.96443 1.21775 0.97467 0.80035 0.95939 0.88942 1.22465 0.97954 1.01043 1.01844 1.86448 1.83585 1.21421 1.39845 0.92779 0.91696 0.90648 0.91266 0.89868 0.94102 0.89132 0.91997 0.96030 0.97983 0.97535 0.92567 0.95874 0.92095 0.89392 0.93781 0.90416 0.91863 0.92533 0.90972 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 9.26 71.95 0.67 -1.96 16 2 C 0.10 1.76 3.41 30.48 0.10 1.87 16 3 H 0.10 1.55 8.28 -1.39 -0.01 1.54 16 4 C -0.14 -2.81 4.48 30.56 0.14 -2.68 16 5 C 0.09 2.00 2.25 44.91 0.10 2.10 16 6 H 0.09 1.87 6.62 -2.57 -0.02 1.86 16 7 N -0.54 -15.34 4.74 -870.10 -4.12 -19.46 16 8 C 0.07 2.02 4.79 86.31 0.41 2.43 16 9 C 0.06 2.56 5.32 86.31 0.46 3.02 16 10 N -0.54 -23.87 4.92 -900.29 -4.43 -28.30 16 11 C 0.20 10.79 5.14 85.56 0.44 11.23 16 12 C -0.56 -31.36 7.66 25.60 0.20 -31.16 16 13 H 0.05 3.09 5.82 -2.91 -0.02 3.07 16 14 C 0.01 0.71 5.46 84.66 0.46 1.18 16 15 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 16 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 C 0.07 2.66 5.24 86.31 0.45 3.11 16 21 C 0.07 2.08 5.17 86.31 0.45 2.52 16 22 C -0.18 -3.64 4.11 30.44 0.13 -3.51 16 23 C 0.11 1.91 3.41 30.47 0.10 2.02 16 24 H 0.09 1.57 8.29 -1.31 -0.01 1.55 16 25 C -0.18 -2.69 9.35 72.01 0.67 -2.02 16 26 O -0.39 -7.93 9.75 -144.79 -1.41 -9.35 16 27 H 0.05 0.85 5.36 -2.39 -0.01 0.84 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.43 6.22 -2.33 -0.01 1.42 16 31 H 0.08 1.65 8.08 -2.32 -0.02 1.63 16 32 H 0.04 1.22 6.45 -2.38 -0.02 1.21 16 33 H 0.09 2.41 6.03 -2.39 -0.01 2.40 16 34 H 0.06 2.45 8.12 -2.39 -0.02 2.43 16 35 H 0.02 0.95 6.78 -2.39 -0.02 0.94 16 36 H 0.00 0.12 8.12 -2.39 -0.02 0.10 16 37 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 39 H 0.02 1.03 6.61 -2.39 -0.02 1.02 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.04 1.28 6.55 -2.39 -0.02 1.27 16 43 H 0.08 1.58 6.39 -2.26 -0.01 1.57 16 44 H 0.06 1.43 6.37 -2.24 -0.01 1.42 16 45 H 0.06 0.89 5.73 -2.39 -0.01 0.88 16 46 H 0.07 0.99 8.02 -2.39 -0.02 0.97 16 47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -62.78 339.60 -1.92 -64.69 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.95 Total: 13.27 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.78 Total: -11.86 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -8.26 Total: -103.28 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.41 Total: -9.35 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.78 -1.92 -64.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590168794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.132 kcal (2) G-P(sol) polarization free energy of solvation -62.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds