Wall clock time and date at job start Tue Mar 31 2020 06:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.51263 * 2 1 4 4 C 1.52781 * 109.56354 * 240.07837 * 2 1 3 5 5 N 1.47078 * 108.76847 * 186.36843 * 4 2 1 6 6 C 1.34773 * 120.88487 * 231.12746 * 5 4 2 7 7 O 1.21283 * 120.00360 * 179.44574 * 6 5 4 8 8 C 1.50706 * 120.00081 * 359.71849 * 6 5 4 9 9 C 1.52998 * 109.47348 * 179.72561 * 8 6 5 10 10 C 1.52996 * 109.46929 * 179.97438 * 9 8 6 11 11 C 1.53008 * 109.46808 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46847 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99683 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99722 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00073 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47233 * 59.99840 * 16 14 12 18 18 H 1.48492 * 109.47488 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46997 * 300.00237 * 16 14 12 20 20 C 1.47084 * 118.23733 * 50.85297 * 5 4 2 21 21 C 1.53239 * 108.51812 * 309.09118 * 20 5 4 22 22 H 1.09002 * 109.49739 * 293.86688 * 21 20 5 23 23 C 1.52997 * 109.49336 * 173.78584 * 21 20 5 24 24 N 1.46897 * 109.49414 * 120.06965 * 2 1 3 25 25 C 1.46895 * 110.99888 * 307.21053 * 24 2 1 26 26 H 1.09005 * 109.47188 * 299.93265 * 1 2 3 27 27 H 1.09000 * 109.47066 * 59.92802 * 1 2 3 28 28 H 1.08997 * 109.47363 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.55801 * 66.55700 * 4 2 1 30 30 H 1.08992 * 109.46264 * 306.12725 * 4 2 1 31 31 H 1.09001 * 109.46564 * 299.73030 * 8 6 5 32 32 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 33 33 H 1.09000 * 109.46986 * 300.00089 * 9 8 6 34 34 H 1.09002 * 109.46857 * 60.00224 * 9 8 6 35 35 H 1.09000 * 109.47441 * 299.99910 * 10 9 8 36 36 H 1.08994 * 109.47235 * 60.00181 * 10 9 8 37 37 H 1.08996 * 109.46961 * 299.99496 * 11 10 9 38 38 H 1.08994 * 109.47402 * 59.99882 * 11 10 9 39 39 H 0.96999 * 120.00128 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.62731 * 68.79385 * 20 5 4 41 41 H 1.08992 * 109.63052 * 189.18794 * 20 5 4 42 42 H 1.09007 * 109.47018 * 60.00421 * 23 21 20 43 43 H 1.08999 * 109.47725 * 179.97438 * 23 21 20 44 44 H 1.08992 * 109.47701 * 300.00251 * 23 21 20 45 45 H 1.09003 * 109.47342 * 295.69673 * 25 24 2 46 46 H 1.08997 * 109.47450 * 55.70034 * 25 24 2 47 47 H 1.09005 * 109.47261 * 175.69876 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0416 -0.7181 -1.2477 5 7 3.5041 -0.8432 -1.1555 6 6 4.2976 -0.4491 -2.1711 7 8 5.5023 -0.5503 -2.0739 8 6 3.6883 0.1230 -3.4251 9 6 4.7997 0.4939 -4.4089 10 6 4.1810 1.0741 -5.6822 11 6 5.2926 1.4444 -6.6664 12 6 4.6831 2.0165 -7.9204 13 1 3.6104 2.1066 -8.0068 14 6 5.4951 2.4250 -8.9570 15 7 6.8015 2.3157 -8.8514 16 14 4.7399 3.1348 -10.5111 17 1 3.9552 4.3486 -10.1704 18 1 5.8186 3.4952 -11.4658 19 1 3.8452 2.1254 -11.1323 20 6 4.0782 -1.4042 0.0770 21 6 3.4867 -0.6537 1.2750 22 1 3.8235 0.3828 1.2573 23 6 3.9485 -1.3191 2.5730 24 7 2.0202 -0.6938 1.1984 25 6 1.4141 -0.1359 2.4146 26 1 -0.3634 0.5128 0.8906 27 1 -0.3633 0.5149 -0.8893 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7787 -0.1411 -2.1344 30 1 1.5923 -1.7094 -1.3061 31 1 3.0319 -0.6183 -3.8809 32 1 3.1120 1.0138 -3.1753 33 1 5.4561 1.2351 -3.9530 34 1 5.3759 -0.3970 -4.6588 35 1 3.5249 0.3325 -6.1380 36 1 3.6045 1.9648 -5.4328 37 1 5.9489 2.1859 -6.2109 38 1 5.8687 0.5535 -6.9158 39 1 7.3727 2.6027 -9.5810 40 1 3.8283 -2.4628 0.1485 41 1 5.1614 -1.2837 0.0643 42 1 5.0368 -1.2911 2.6284 43 1 3.5280 -0.7847 3.4249 44 1 3.6103 -2.3550 2.5906 45 1 1.7295 0.9005 2.5353 46 1 0.3281 -0.1779 2.3315 47 1 1.7349 -0.7164 3.2797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590515798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:23 Heat of formation + Delta-G solvation = -48.686096 kcal Electronic energy + Delta-G solvation = -22591.785035 eV Core-core repulsion = 19387.839733 eV Total energy + Delta-G solvation = -3203.945303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.55877 -38.68223 -35.01817 -34.90292 -34.09025 -32.57859 -30.16040 -29.50165 -27.55036 -27.27753 -25.60422 -24.26244 -22.22560 -21.59368 -20.39718 -19.98477 -18.95866 -17.03322 -16.66248 -16.17277 -16.00198 -15.81753 -15.38202 -14.58482 -14.47367 -14.42173 -14.19506 -13.39437 -13.30101 -13.22577 -12.66764 -12.62405 -12.48428 -12.20530 -12.15493 -11.93584 -11.87880 -11.64800 -11.52219 -11.34229 -11.25393 -11.09532 -10.95264 -10.52018 -10.50428 -10.37391 -9.72587 -9.58755 -9.19896 -8.97026 -8.96023 -8.56020 -8.28531 -5.93364 -3.95992 2.70638 2.84602 3.36369 3.40707 3.42910 3.44081 4.35559 4.39742 4.50272 4.56072 4.69628 4.81060 4.85997 4.95140 5.05597 5.10858 5.14115 5.29497 5.30351 5.31983 5.35762 5.37987 5.41883 5.44857 5.54543 5.59485 5.62357 5.70444 5.77027 5.87327 5.92173 6.15977 6.27387 6.36399 6.57412 6.64267 6.68926 6.86431 7.03905 7.21903 7.34586 7.75860 7.92434 8.08167 8.23219 8.49781 9.11580 9.67486 11.17977 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032050 B = 0.002729 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.416564 B =10256.137631 C =10913.200870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.065 3.935 3 H 0.046 0.954 4 C 0.116 3.884 5 N -0.623 5.623 6 C 0.515 3.485 7 O -0.535 6.535 8 C -0.137 4.137 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.121 3.879 21 C 0.067 3.933 22 H 0.045 0.955 23 C -0.146 4.146 24 N -0.533 5.533 25 C 0.017 3.983 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.024 0.976 46 H 0.074 0.926 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.434 -7.216 24.595 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.044 4.044 3 H 0.064 0.936 4 C -0.007 4.007 5 N -0.358 5.358 6 C 0.304 3.696 7 O -0.411 6.411 8 C -0.177 4.177 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.002 4.002 21 C -0.042 4.042 22 H 0.063 0.937 23 C -0.204 4.204 24 N -0.259 5.259 25 C -0.131 4.131 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.093 0.907 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.729 -7.723 24.483 28.655 hybrid contribution -0.223 1.297 -0.745 1.512 sum -12.952 -6.426 23.739 27.795 Atomic orbital electron populations 1.21896 0.93234 1.03026 1.02400 1.21941 0.95979 0.95975 0.90524 0.93599 1.21803 0.79723 1.01520 0.97656 1.48261 1.06842 1.63948 1.16727 1.21125 0.86953 0.76820 0.84658 1.90692 1.14649 1.54714 1.81059 1.21818 1.00987 1.01599 0.93302 1.21461 0.96123 1.01621 0.94919 1.21646 0.99856 0.98838 0.94396 1.19091 0.93196 0.96619 0.92790 1.21250 0.92947 1.41088 1.00615 0.92811 1.25040 0.94838 0.96052 0.98632 1.69966 1.02964 1.47936 1.32640 0.86671 0.78733 0.79536 0.83113 1.20303 1.21324 1.20274 1.21682 0.99384 0.97232 0.81933 1.22018 0.87436 0.98758 0.95965 0.93709 1.21867 1.01364 1.01528 0.95644 1.62021 1.06126 1.55459 1.02278 1.22522 1.00393 0.97519 0.92683 0.91966 0.91525 0.91359 0.88862 0.90538 0.89122 0.89315 0.91867 0.91767 0.93464 0.93535 0.96619 0.96579 0.92989 0.90996 0.88685 0.91705 0.92064 0.91428 0.95767 0.90740 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.73 37.16 0.32 -0.55 16 2 C 0.06 0.52 2.59 -67.83 -0.18 0.35 16 3 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 4 C 0.12 1.03 5.76 -3.84 -0.02 1.01 16 5 N -0.62 -7.36 3.02 -172.74 -0.52 -7.88 16 6 C 0.51 7.73 7.71 -10.98 -0.08 7.64 16 7 O -0.54 -10.16 15.43 5.56 0.09 -10.08 16 8 C -0.14 -1.92 4.07 -27.88 -0.11 -2.04 16 9 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.78 13.29 55.43 0.74 -27.05 16 16 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.12 1.29 5.89 -3.60 -0.02 1.27 16 21 C 0.07 0.60 2.60 -67.59 -0.18 0.42 16 22 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 23 C -0.15 -1.00 8.71 37.16 0.32 -0.67 16 24 N -0.53 -4.35 4.58 -226.90 -1.04 -5.38 16 25 C 0.02 0.11 8.56 60.06 0.51 0.62 16 26 H 0.06 0.34 6.23 -51.93 -0.32 0.01 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.74 6.02 -51.92 -0.31 0.42 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.10 8.02 -51.93 -0.42 0.69 16 32 H 0.09 1.08 7.64 -51.93 -0.40 0.68 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.16 7.06 -51.93 -0.37 0.80 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.37 6.33 -51.93 -0.33 0.04 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.07 0.41 5.94 -51.93 -0.31 0.10 16 47 H 0.07 0.42 6.21 -51.93 -0.32 0.10 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -33.67 362.53 -9.19 -42.85 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -8.65 Total: -5.04 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.24 Total: -9.92 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.82 Total: -40.31 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.67 -9.19 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590515798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.833 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds