Wall clock time and date at job start Tue Mar 31 2020 06:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 119.99799 * 2 1 4 4 N 1.46897 * 109.47263 * 125.11995 * 3 2 1 5 5 C 1.46902 * 110.99999 * 164.12751 * 4 3 2 6 6 C 1.50702 * 109.46982 * 293.95290 * 5 4 3 7 7 H 1.08004 * 120.00161 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99882 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00301 * 179.73032 * 8 6 5 10 10 Si 1.86799 * 120.00144 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47544 * 269.72510 * 10 8 6 12 12 H 1.48500 * 109.46989 * 29.72747 * 10 8 6 13 13 H 1.48505 * 109.47226 * 149.72482 * 10 8 6 14 14 C 1.46901 * 111.00064 * 288.07946 * 4 3 2 15 15 C 1.53001 * 109.46837 * 159.50690 * 14 4 3 16 16 N 1.46911 * 109.46764 * 185.28991 * 15 14 4 17 17 C 1.47012 * 110.99981 * 293.63848 * 16 15 14 18 18 C 1.53103 * 109.25435 * 177.60915 * 17 16 15 19 19 H 1.08999 * 109.53868 * 296.89153 * 18 17 16 20 20 C 1.53000 * 109.50364 * 176.78419 * 18 17 16 21 21 O 1.43013 * 109.26075 * 56.84704 * 18 17 16 22 22 C 1.43016 * 113.74028 * 301.33238 * 21 18 17 23 23 H 1.08991 * 109.54678 * 178.62806 * 22 21 18 24 24 C 1.53011 * 109.50427 * 298.73630 * 22 21 18 25 25 C 1.47016 * 110.99777 * 170.00009 * 16 15 14 26 26 H 1.07998 * 119.99839 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00292 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00292 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47173 * 5.11850 * 3 2 1 30 30 H 1.09003 * 109.47283 * 245.12317 * 3 2 1 31 31 H 1.09005 * 109.46867 * 173.95683 * 5 4 3 32 32 H 1.08994 * 109.47544 * 53.95588 * 5 4 3 33 33 H 0.96996 * 120.00766 * 180.27767 * 9 8 6 34 34 H 1.08999 * 109.47086 * 279.50666 * 14 4 3 35 35 H 1.09000 * 109.46988 * 39.51446 * 14 4 3 36 36 H 1.08995 * 109.47656 * 305.29002 * 15 14 4 37 37 H 1.09003 * 109.47136 * 65.29935 * 15 14 4 38 38 H 1.09004 * 109.50708 * 297.53720 * 17 16 15 39 39 H 1.08997 * 109.50980 * 57.67418 * 17 16 15 40 40 H 1.08997 * 109.46796 * 300.21442 * 20 18 17 41 41 H 1.08999 * 109.47254 * 60.21634 * 20 18 17 42 42 H 1.09005 * 109.46805 * 180.21412 * 20 18 17 43 43 H 1.09000 * 109.46888 * 179.78109 * 24 22 21 44 44 H 1.08999 * 109.46452 * 299.78003 * 24 22 21 45 45 H 1.09001 * 109.47247 * 59.78239 * 24 22 21 46 46 H 1.09000 * 109.50965 * 302.33094 * 25 16 15 47 47 H 1.08997 * 109.50390 * 62.46046 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9983 1.3309 1.1328 5 6 4.0018 2.3903 0.9633 6 6 4.8793 2.0666 -0.2184 7 1 4.7083 1.1644 -0.7869 8 6 5.9003 2.9223 -0.5737 9 7 6.6694 2.6372 -1.6017 10 14 6.1955 4.4831 0.4091 11 1 5.4028 5.5941 -0.1762 12 1 5.7794 4.2670 1.8182 13 1 7.6390 4.8292 0.3668 14 6 2.2799 1.4849 2.4049 15 6 3.1698 1.0072 3.5542 16 7 2.4083 1.0420 4.8100 17 6 2.0745 2.4236 5.1857 18 6 1.2324 2.4098 6.4643 19 1 0.2906 1.8949 6.2749 20 6 0.9493 3.8473 6.9050 21 8 1.9511 1.7270 7.4951 22 6 2.2920 0.3783 7.1629 23 1 2.8561 -0.0675 7.9819 24 6 1.0135 -0.4279 6.9248 25 6 3.1447 0.3715 5.8914 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3587 2.1315 0.0917 30 1 2.6196 1.4037 -0.9323 31 1 4.6140 2.4581 1.8627 32 1 3.4996 3.3425 0.7930 33 1 7.3903 3.2371 -1.8493 34 1 2.0260 2.5344 2.5539 35 1 1.3669 0.8899 2.3809 36 1 3.5005 -0.0126 3.3580 37 1 4.0379 1.6612 3.6375 38 1 2.9923 2.9851 5.3604 39 1 1.5076 2.8927 4.3815 40 1 1.8916 4.3620 7.0927 41 1 0.4016 4.3672 6.1190 42 1 0.3530 3.8368 7.8174 43 1 1.2740 -1.4546 6.6679 44 1 0.4068 -0.4227 7.8304 45 1 0.4489 0.0193 6.1066 46 1 3.3590 -0.6574 5.6024 47 1 4.0795 0.9002 6.0774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595502517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:49 Heat of formation + Delta-G solvation = -14.961902 kcal Electronic energy + Delta-G solvation = -23380.636024 eV Core-core repulsion = 20178.153112 eV Total energy + Delta-G solvation = -3202.482912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.06591 -37.58520 -35.63695 -33.50497 -33.23582 -32.29925 -30.61084 -28.91116 -27.42384 -26.97322 -25.15365 -23.56527 -22.61442 -21.60399 -19.93915 -19.50786 -19.27022 -16.98775 -16.59205 -16.39967 -15.60212 -15.15518 -14.91119 -14.73510 -14.65312 -14.05855 -13.83273 -13.63919 -13.24645 -12.96854 -12.74473 -12.54319 -12.45813 -12.36937 -12.05365 -11.99703 -11.76256 -11.70218 -11.30186 -11.17630 -10.96721 -10.89244 -10.70098 -10.58323 -10.35449 -9.99472 -9.86586 -9.60919 -9.40266 -8.91331 -8.61107 -8.30133 -7.44815 -6.09236 -4.06612 2.65500 3.23921 3.32228 3.33416 3.59279 3.80181 4.37781 4.66391 4.76961 4.83955 4.95136 4.99437 5.09116 5.22852 5.25003 5.29203 5.38554 5.40244 5.47716 5.51866 5.56408 5.59038 5.68555 5.73808 5.81745 5.82619 5.94019 5.97684 5.99555 6.02396 6.20809 6.23711 6.28326 6.40063 6.50133 6.78288 6.84754 7.00456 7.01804 7.08188 7.14656 7.14849 7.57845 7.87783 8.01761 8.61584 8.99516 9.52603 11.03807 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014523 B = 0.004797 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.511407 B = 5835.176003 C = 6893.730586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.118 4.118 3 C 0.083 3.917 4 N -0.524 5.524 5 C 0.162 3.838 6 C -0.510 4.510 7 H 0.082 0.918 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.277 1.277 12 H -0.269 1.269 13 H -0.285 1.285 14 C 0.060 3.940 15 C 0.063 3.937 16 N -0.533 5.533 17 C 0.020 3.980 18 C 0.087 3.913 19 H 0.069 0.931 20 C -0.145 4.145 21 O -0.380 6.380 22 C 0.091 3.909 23 H 0.102 0.898 24 C -0.174 4.174 25 C 0.024 3.976 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.024 0.976 30 H 0.101 0.899 31 H 0.028 0.972 32 H -0.018 1.018 33 H 0.264 0.736 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.473 -2.769 15.721 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.137 4.137 3 C -0.044 4.044 4 N -0.248 5.248 5 C 0.035 3.965 6 C -0.549 4.549 7 H 0.100 0.900 8 C -0.132 4.132 9 N -0.538 5.538 10 Si 0.701 3.299 11 H -0.203 1.203 12 H -0.194 1.194 13 H -0.211 1.211 14 C -0.069 4.069 15 C -0.065 4.065 16 N -0.258 5.258 17 C -0.108 4.108 18 C 0.030 3.970 19 H 0.087 0.913 20 C -0.202 4.202 21 O -0.300 6.300 22 C 0.033 3.967 23 H 0.120 0.880 24 C -0.232 4.232 25 C -0.104 4.104 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.043 0.957 30 H 0.119 0.881 31 H 0.046 0.954 32 H 0.000 1.000 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.434 -3.307 15.716 20.311 hybrid contribution 0.677 1.951 0.223 2.077 sum -11.757 -1.356 15.939 19.852 Atomic orbital electron populations 1.23688 0.95965 1.00994 1.05005 1.23107 0.95238 0.99449 0.95870 1.21205 0.93741 0.92725 0.96736 1.61763 1.13993 1.49304 0.99699 1.20229 0.90491 0.87629 0.98109 1.21040 1.13275 1.08954 1.11582 0.89986 1.24884 0.95722 0.97702 0.94867 1.69885 1.19294 1.37678 1.26908 0.86900 0.77626 0.84259 0.81152 1.20312 1.19383 1.21097 1.21991 0.96680 0.98144 0.90044 1.22097 0.94570 1.02397 0.87444 1.62175 1.44902 1.15534 1.03219 1.22869 0.99737 0.90238 0.97962 1.22150 0.94676 0.93473 0.86747 0.91348 1.21752 1.02396 0.94093 1.02006 1.88008 1.75743 1.25140 1.41070 1.22239 0.95496 0.82787 0.96171 0.88027 1.22274 0.98138 1.00497 1.02261 1.22759 0.95478 1.00359 0.91848 0.89068 0.89302 0.87215 0.95736 0.88066 0.95359 0.99994 0.92628 0.96020 0.90808 0.89706 0.94501 0.94093 0.89581 0.91942 0.90963 0.91734 0.91710 0.92672 0.90886 0.89538 0.94092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.00 14.32 29.01 0.42 -2.58 16 2 C -0.12 -1.89 8.75 -36.03 -0.32 -2.21 16 3 C 0.08 1.58 5.25 -4.98 -0.03 1.55 16 4 N -0.52 -10.65 4.37 -237.52 -1.04 -11.68 16 5 C 0.16 3.85 3.61 -4.97 -0.02 3.83 16 6 C -0.51 -14.21 8.84 -34.44 -0.30 -14.51 16 7 H 0.08 2.48 7.50 -52.48 -0.39 2.09 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 10 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.06 1.03 4.63 -3.82 -0.02 1.01 16 15 C 0.06 1.00 5.00 -3.82 -0.02 0.98 16 16 N -0.53 -7.23 4.10 -234.30 -0.96 -8.19 16 17 C 0.02 0.26 4.72 -3.71 -0.02 0.25 16 18 C 0.09 1.00 3.03 -26.68 -0.08 0.92 16 19 H 0.07 0.76 6.49 -51.93 -0.34 0.42 16 20 C -0.14 -1.38 9.57 37.16 0.36 -1.03 16 21 O -0.38 -4.76 10.28 -35.23 -0.36 -5.12 16 22 C 0.09 0.98 3.92 -26.68 -0.10 0.88 16 23 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 24 C -0.17 -1.70 8.89 37.16 0.33 -1.37 16 25 C 0.02 0.29 5.06 -3.71 -0.02 0.27 16 26 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.09 1.17 7.84 -52.49 -0.41 0.76 16 28 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.02 0.44 7.71 -51.93 -0.40 0.04 16 30 H 0.10 2.17 6.59 -51.93 -0.34 1.83 16 31 H 0.03 0.69 5.82 -51.93 -0.30 0.39 16 32 H -0.02 -0.42 7.55 -51.93 -0.39 -0.82 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.02 0.37 6.62 -51.93 -0.34 0.03 16 35 H 0.07 1.20 7.11 -51.93 -0.37 0.83 16 36 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 37 H 0.04 0.66 6.97 -51.93 -0.36 0.30 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.11 6.50 -51.93 -0.34 0.78 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.80 6.12 -51.93 -0.32 0.48 16 46 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 47 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -29.62 360.47 -9.28 -38.90 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.54 Total: 0.50 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -1.22 Total: -46.33 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.36 Total: -5.12 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.62 -9.28 -38.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595502517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.941 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds