Wall clock time and date at job start Tue Mar 31 2020 06:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00138 * 2 1 4 4 N 1.46903 * 109.47384 * 124.73267 * 3 2 1 5 5 C 1.46900 * 110.99704 * 164.34110 * 4 3 2 6 6 C 1.50698 * 109.46903 * 293.94665 * 5 4 3 7 7 H 1.08004 * 120.00417 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00165 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00237 * 180.02562 * 8 6 5 10 10 Si 1.86810 * 119.99579 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.46707 * 90.00020 * 10 8 6 12 12 H 1.48500 * 109.47133 * 209.99564 * 10 8 6 13 13 H 1.48497 * 109.47042 * 329.99910 * 10 8 6 14 14 C 1.46897 * 110.99768 * 288.29151 * 4 3 2 15 15 C 1.52998 * 109.47399 * 164.98498 * 14 4 3 16 16 N 1.46894 * 109.47656 * 185.33661 * 15 14 4 17 17 C 1.47011 * 111.00093 * 169.99814 * 16 15 14 18 18 C 1.53097 * 109.25896 * 182.39263 * 17 16 15 19 19 H 1.08997 * 109.50561 * 63.13025 * 18 17 16 20 20 C 1.52999 * 109.50835 * 183.22015 * 18 17 16 21 21 O 1.43020 * 109.25634 * 303.15708 * 18 17 16 22 22 C 1.43012 * 113.74261 * 58.67094 * 21 18 17 23 23 H 1.08995 * 109.50850 * 61.26284 * 22 21 18 24 24 C 1.52995 * 109.50788 * 181.39552 * 22 21 18 25 25 C 1.47012 * 111.00023 * 293.63770 * 16 15 14 26 26 H 1.08000 * 119.99644 * 179.72720 * 1 2 3 27 27 H 1.08001 * 119.99829 * 359.72838 * 1 2 3 28 28 H 1.08002 * 120.00350 * 180.27046 * 2 1 3 29 29 H 1.09006 * 109.46978 * 244.73245 * 3 2 1 30 30 H 1.08994 * 109.47101 * 4.72853 * 3 2 1 31 31 H 1.08997 * 109.47589 * 53.95302 * 5 4 3 32 32 H 1.09000 * 109.46444 * 173.95261 * 5 4 3 33 33 H 0.97004 * 120.00067 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47497 * 284.98759 * 14 4 3 35 35 H 1.08998 * 109.47096 * 44.98270 * 14 4 3 36 36 H 1.09000 * 109.47138 * 305.34177 * 15 14 4 37 37 H 1.09001 * 109.46580 * 65.33195 * 15 14 4 38 38 H 1.08995 * 109.50689 * 302.33180 * 17 16 15 39 39 H 1.09006 * 109.50286 * 62.42178 * 17 16 15 40 40 H 1.08999 * 109.47235 * 60.00054 * 20 18 17 41 41 H 1.09005 * 109.46617 * 180.02562 * 20 18 17 42 42 H 1.08998 * 109.47028 * 299.99551 * 20 18 17 43 43 H 1.08998 * 109.47713 * 59.99657 * 24 22 21 44 44 H 1.09001 * 109.47095 * 179.97438 * 24 22 21 45 45 H 1.09002 * 109.47256 * 299.99794 * 24 22 21 46 46 H 1.09005 * 109.50919 * 297.54061 * 25 16 15 47 47 H 1.09000 * 109.50601 * 57.67055 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9917 1.3347 1.1382 5 6 3.9931 2.3967 0.9733 6 6 4.8783 2.0743 -0.2028 7 1 4.7133 1.1709 -0.7713 8 6 5.8990 2.9324 -0.5533 9 7 6.6712 2.6513 -1.5800 10 14 6.1849 4.4946 0.4305 11 1 7.1341 4.2154 1.5378 12 1 6.7533 5.5411 -0.4566 13 1 4.8947 4.9689 0.9921 14 6 2.2655 1.4880 2.4059 15 6 3.1952 1.1439 3.5712 16 7 2.4361 1.1730 4.8285 17 6 3.2296 0.6205 5.9359 18 6 2.3818 0.6146 7.2107 19 1 1.5239 -0.0437 7.0743 20 6 3.2273 0.1157 8.3843 21 8 1.9269 1.9434 7.4807 22 6 1.1501 2.5121 6.4231 23 1 0.2560 1.9095 6.2636 24 6 0.7453 3.9394 6.7971 25 6 1.9855 2.5371 5.1403 26 1 -0.5399 -0.9353 -0.0045 27 1 -0.5400 0.9353 0.0044 28 1 1.8500 -0.9353 -0.0044 29 1 2.6251 1.4004 -0.9294 30 1 1.3583 2.1318 0.0847 31 1 3.4892 3.3474 0.7990 32 1 4.5998 2.4673 1.8762 33 1 7.3890 3.2552 -1.8267 34 1 1.9231 2.5180 2.5062 35 1 1.4066 0.8171 2.4160 36 1 3.6122 0.1480 3.4215 37 1 4.0041 1.8730 3.6181 38 1 3.5310 -0.3988 5.6946 39 1 4.1162 1.2354 6.0905 40 1 4.0841 0.7754 8.5211 41 1 2.6229 0.1114 9.2914 42 1 3.5768 -0.8955 8.1762 43 1 1.6401 4.5415 6.9545 44 1 0.1537 4.3724 5.9904 45 1 0.1539 3.9213 7.7125 46 1 2.8519 3.1831 5.2827 47 1 1.3788 2.9169 4.3183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595502521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:52 Heat of formation + Delta-G solvation = -17.392724 kcal Electronic energy + Delta-G solvation = -23201.743944 eV Core-core repulsion = 19999.155623 eV Total energy + Delta-G solvation = -3202.588320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.89748 -37.58893 -35.64073 -33.85265 -33.24426 -32.30092 -30.60278 -29.03711 -27.47919 -26.82156 -25.11847 -23.39313 -22.12883 -21.60783 -20.47078 -19.82311 -19.26521 -16.99088 -16.69236 -16.22376 -15.64171 -15.30444 -14.88364 -14.72110 -14.60138 -13.96651 -13.80202 -13.58798 -13.12707 -12.95739 -12.81825 -12.71089 -12.46055 -12.26494 -12.19653 -12.03954 -11.93069 -11.75688 -11.27476 -11.10437 -11.00953 -10.88935 -10.63657 -10.52933 -10.47022 -10.12140 -9.88836 -9.60306 -9.40865 -8.91852 -8.60433 -8.32927 -7.43542 -6.09305 -4.06603 2.65706 3.23861 3.31927 3.33240 3.51686 3.75753 4.37656 4.61721 4.82627 4.83835 4.90227 5.02034 5.03852 5.22430 5.26546 5.29422 5.36886 5.38745 5.41831 5.50346 5.56118 5.57755 5.59582 5.71429 5.78235 5.80435 5.91414 5.95296 5.96906 6.01488 6.04282 6.24406 6.26989 6.39993 6.49973 6.77015 6.87623 6.99595 7.00506 7.07093 7.14541 7.15822 7.56935 7.87531 8.01492 8.61589 8.99519 9.52561 11.03717 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.004691 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.148891 B = 5967.882715 C = 6941.609268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.118 4.118 3 C 0.084 3.916 4 N -0.524 5.524 5 C 0.161 3.839 6 C -0.510 4.510 7 H 0.082 0.918 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.871 3.129 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.061 3.939 15 C 0.061 3.939 16 N -0.537 5.537 17 C 0.024 3.976 18 C 0.091 3.909 19 H 0.065 0.935 20 C -0.144 4.144 21 O -0.383 6.383 22 C 0.092 3.908 23 H 0.065 0.935 24 C -0.144 4.144 25 C 0.020 3.980 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.024 0.976 31 H -0.013 1.013 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.041 0.959 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.750 -2.427 16.240 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.137 4.137 3 C -0.044 4.044 4 N -0.248 5.248 5 C 0.034 3.966 6 C -0.549 4.549 7 H 0.100 0.900 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.194 1.194 14 C -0.068 4.068 15 C -0.066 4.066 16 N -0.262 5.262 17 C -0.104 4.104 18 C 0.033 3.967 19 H 0.083 0.917 20 C -0.201 4.201 21 O -0.303 6.303 22 C 0.034 3.966 23 H 0.083 0.917 24 C -0.202 4.202 25 C -0.108 4.108 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.043 0.957 31 H 0.005 0.995 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.692 -2.989 16.242 20.235 hybrid contribution 0.623 2.032 0.192 2.134 sum -11.069 -0.958 16.434 19.837 Atomic orbital electron populations 1.23690 0.95969 1.01002 1.04987 1.23107 0.95249 0.99449 0.95892 1.21197 0.93805 0.92736 0.96618 1.61784 1.14092 1.49165 0.99729 1.20224 0.90616 0.87915 0.97811 1.21040 1.13004 1.08812 1.12004 0.89972 1.24880 0.95682 0.97646 0.94929 1.69886 1.19298 1.37562 1.27003 0.86923 0.78796 0.83955 0.80455 1.20205 1.21093 1.19360 1.21990 0.96317 0.98563 0.89939 1.22117 0.94685 1.02468 0.87343 1.62170 1.40649 1.20450 1.02953 1.22797 0.95300 1.01079 0.91232 1.22121 0.96422 0.84280 0.93852 0.91671 1.21744 0.99936 1.01104 0.97348 1.87953 1.71169 1.29629 1.41516 1.22120 0.93337 0.95023 0.86142 0.91678 1.21746 1.01971 0.94257 1.02208 1.22876 0.99498 0.90178 0.98289 0.89054 0.89297 0.87202 0.88046 0.95740 0.99527 0.95747 0.92627 0.96176 0.90713 0.89608 0.94438 0.89563 0.94020 0.91904 0.91729 0.90878 0.91910 0.90907 0.91692 0.94058 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.02 14.32 29.02 0.42 -2.60 16 2 C -0.12 -1.91 8.76 -36.02 -0.32 -2.22 16 3 C 0.08 1.60 5.26 -4.97 -0.03 1.57 16 4 N -0.52 -10.72 4.41 -237.52 -1.05 -11.77 16 5 C 0.16 3.83 3.64 -4.98 -0.02 3.81 16 6 C -0.51 -14.24 8.84 -34.44 -0.30 -14.54 16 7 H 0.08 2.49 7.50 -52.48 -0.39 2.09 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 10 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 14 C 0.06 1.05 4.61 -3.83 -0.02 1.03 16 15 C 0.06 1.00 4.89 -3.83 -0.02 0.98 16 16 N -0.54 -7.55 4.73 -234.31 -1.11 -8.65 16 17 C 0.02 0.30 4.93 -3.71 -0.02 0.29 16 18 C 0.09 1.02 3.43 -26.68 -0.09 0.93 16 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 20 C -0.14 -1.28 9.57 37.16 0.36 -0.92 16 21 O -0.38 -4.87 10.11 -35.23 -0.36 -5.23 16 22 C 0.09 1.07 3.43 -26.68 -0.09 0.98 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.14 -1.38 9.57 37.16 0.36 -1.02 16 25 C 0.02 0.26 4.72 -3.71 -0.02 0.25 16 26 H 0.09 1.10 8.06 -52.49 -0.42 0.67 16 27 H 0.09 1.18 7.84 -52.49 -0.41 0.77 16 28 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.10 2.18 6.59 -51.93 -0.34 1.84 16 30 H 0.02 0.45 7.71 -51.93 -0.40 0.05 16 31 H -0.01 -0.32 7.18 -51.93 -0.37 -0.69 16 32 H 0.02 0.59 5.87 -51.93 -0.30 0.29 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.02 0.35 6.69 -51.93 -0.35 0.00 16 35 H 0.07 1.24 7.17 -51.93 -0.37 0.86 16 36 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 37 H 0.04 0.67 6.74 -51.93 -0.35 0.32 16 38 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.14 6.50 -51.93 -0.34 0.80 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -29.88 364.62 -9.51 -39.40 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.71 Total: 0.07 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 0.11 Total: -9.57 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -1.38 Total: -46.89 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.36 Total: -5.23 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.88 -9.51 -39.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595502521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.004 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds