Wall clock time and date at job start Tue Mar 31 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00138 * 2 1 4 4 N 1.46903 * 109.47384 * 124.73267 * 3 2 1 5 5 C 1.46900 * 110.99704 * 164.34110 * 4 3 2 6 6 C 1.50698 * 109.46903 * 293.94665 * 5 4 3 7 7 H 1.08004 * 120.00417 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00165 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00237 * 180.02562 * 8 6 5 10 10 Si 1.86810 * 119.99579 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.46707 * 90.00020 * 10 8 6 12 12 H 1.48500 * 109.47133 * 209.99564 * 10 8 6 13 13 H 1.48497 * 109.47042 * 329.99910 * 10 8 6 14 14 C 1.46897 * 110.99768 * 288.29151 * 4 3 2 15 15 C 1.52998 * 109.47399 * 164.98498 * 14 4 3 16 16 N 1.46894 * 109.47656 * 185.33661 * 15 14 4 17 17 C 1.47011 * 111.00093 * 169.99814 * 16 15 14 18 18 C 1.53097 * 109.25896 * 182.39263 * 17 16 15 19 19 H 1.08997 * 109.50561 * 63.13025 * 18 17 16 20 20 C 1.52999 * 109.50835 * 183.22015 * 18 17 16 21 21 O 1.43020 * 109.25634 * 303.15708 * 18 17 16 22 22 C 1.43012 * 113.74261 * 58.67094 * 21 18 17 23 23 H 1.08995 * 109.50850 * 61.26284 * 22 21 18 24 24 C 1.52995 * 109.50788 * 181.39552 * 22 21 18 25 25 C 1.47012 * 111.00023 * 293.63770 * 16 15 14 26 26 H 1.08000 * 119.99644 * 179.72720 * 1 2 3 27 27 H 1.08001 * 119.99829 * 359.72838 * 1 2 3 28 28 H 1.08002 * 120.00350 * 180.27046 * 2 1 3 29 29 H 1.09006 * 109.46978 * 244.73245 * 3 2 1 30 30 H 1.08994 * 109.47101 * 4.72853 * 3 2 1 31 31 H 1.08997 * 109.47589 * 53.95302 * 5 4 3 32 32 H 1.09000 * 109.46444 * 173.95261 * 5 4 3 33 33 H 0.97004 * 120.00067 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47497 * 284.98759 * 14 4 3 35 35 H 1.08998 * 109.47096 * 44.98270 * 14 4 3 36 36 H 1.09000 * 109.47138 * 305.34177 * 15 14 4 37 37 H 1.09001 * 109.46580 * 65.33195 * 15 14 4 38 38 H 1.08995 * 109.50689 * 302.33180 * 17 16 15 39 39 H 1.09006 * 109.50286 * 62.42178 * 17 16 15 40 40 H 1.08999 * 109.47235 * 60.00054 * 20 18 17 41 41 H 1.09005 * 109.46617 * 180.02562 * 20 18 17 42 42 H 1.08998 * 109.47028 * 299.99551 * 20 18 17 43 43 H 1.08998 * 109.47713 * 59.99657 * 24 22 21 44 44 H 1.09001 * 109.47095 * 179.97438 * 24 22 21 45 45 H 1.09002 * 109.47256 * 299.99794 * 24 22 21 46 46 H 1.09005 * 109.50919 * 297.54061 * 25 16 15 47 47 H 1.09000 * 109.50601 * 57.67055 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9917 1.3347 1.1382 5 6 3.9931 2.3967 0.9733 6 6 4.8783 2.0743 -0.2028 7 1 4.7133 1.1709 -0.7713 8 6 5.8990 2.9324 -0.5533 9 7 6.6712 2.6513 -1.5800 10 14 6.1849 4.4946 0.4305 11 1 7.1341 4.2154 1.5378 12 1 6.7533 5.5411 -0.4566 13 1 4.8947 4.9689 0.9921 14 6 2.2655 1.4880 2.4059 15 6 3.1952 1.1439 3.5712 16 7 2.4361 1.1730 4.8285 17 6 3.2296 0.6205 5.9359 18 6 2.3818 0.6146 7.2107 19 1 1.5239 -0.0437 7.0743 20 6 3.2273 0.1157 8.3843 21 8 1.9269 1.9434 7.4807 22 6 1.1501 2.5121 6.4231 23 1 0.2560 1.9095 6.2636 24 6 0.7453 3.9394 6.7971 25 6 1.9855 2.5371 5.1403 26 1 -0.5399 -0.9353 -0.0045 27 1 -0.5400 0.9353 0.0044 28 1 1.8500 -0.9353 -0.0044 29 1 2.6251 1.4004 -0.9294 30 1 1.3583 2.1318 0.0847 31 1 3.4892 3.3474 0.7990 32 1 4.5998 2.4673 1.8762 33 1 7.3890 3.2552 -1.8267 34 1 1.9231 2.5180 2.5062 35 1 1.4066 0.8171 2.4160 36 1 3.6122 0.1480 3.4215 37 1 4.0041 1.8730 3.6181 38 1 3.5310 -0.3988 5.6946 39 1 4.1162 1.2354 6.0905 40 1 4.0841 0.7754 8.5211 41 1 2.6229 0.1114 9.2914 42 1 3.5768 -0.8955 8.1762 43 1 1.6401 4.5415 6.9545 44 1 0.1537 4.3724 5.9904 45 1 0.1539 3.9213 7.7125 46 1 2.8519 3.1831 5.2827 47 1 1.3788 2.9169 4.3183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595502521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:51 Heat of formation + Delta-G solvation = -37.913054 kcal Electronic energy + Delta-G solvation = -23202.633772 eV Core-core repulsion = 19999.155623 eV Total energy + Delta-G solvation = -3203.478149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90206 -39.08263 -36.80890 -34.99563 -34.70459 -34.03335 -31.66632 -30.44131 -29.12934 -27.75566 -26.40658 -24.96906 -23.13584 -22.95710 -21.50883 -21.28481 -20.58203 -19.08029 -17.62238 -17.37870 -16.92799 -16.61113 -16.28621 -16.09088 -15.83103 -15.44845 -15.02716 -14.99322 -14.53556 -14.35939 -14.13918 -13.84556 -13.78053 -13.49529 -13.11020 -13.06046 -12.87815 -12.81729 -12.77341 -12.67453 -12.39074 -12.14375 -11.96390 -11.92985 -11.81079 -11.63636 -11.53411 -11.39129 -10.82038 -10.56344 -10.19707 -9.50488 -9.07219 -8.31264 -6.33823 1.29342 1.30251 1.40195 1.44433 2.29607 2.55780 2.72158 3.01738 3.38057 3.71008 3.88322 3.90564 4.03903 4.08925 4.14177 4.18576 4.21181 4.30251 4.40024 4.45162 4.51584 4.62253 4.63507 4.66811 4.68183 4.71296 4.76588 4.87266 4.93635 4.96699 4.99228 4.99656 5.06282 5.11607 5.18013 5.21036 5.29599 5.50281 5.77410 5.82399 5.89104 5.90390 5.99802 6.25761 6.35945 6.62849 6.72675 7.29448 8.85264 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.004691 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.148891 B = 5967.882715 C = 6941.609268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.089 3.911 4 N -0.536 5.536 5 C 0.173 3.827 6 C -0.514 4.514 7 H 0.042 0.958 8 C 0.013 3.987 9 N -0.945 5.945 10 Si 0.939 3.061 11 H -0.268 1.268 12 H -0.279 1.279 13 H -0.255 1.255 14 C 0.070 3.930 15 C 0.070 3.930 16 N -0.535 5.535 17 C 0.022 3.978 18 C 0.091 3.909 19 H 0.071 0.929 20 C -0.139 4.139 21 O -0.396 6.396 22 C 0.092 3.908 23 H 0.072 0.928 24 C -0.141 4.141 25 C 0.019 3.981 26 H 0.118 0.882 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.033 0.967 31 H -0.017 1.017 32 H 0.026 0.974 33 H 0.267 0.733 34 H 0.023 0.977 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.016 0.984 38 H 0.096 0.904 39 H 0.029 0.971 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.026 0.974 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.777 -2.106 18.355 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.165 4.165 3 C -0.039 4.039 4 N -0.261 5.261 5 C 0.046 3.954 6 C -0.552 4.552 7 H 0.060 0.940 8 C -0.184 4.184 9 N -0.585 5.585 10 Si 0.763 3.237 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.179 1.179 14 C -0.058 4.058 15 C -0.058 4.058 16 N -0.259 5.259 17 C -0.106 4.106 18 C 0.033 3.967 19 H 0.089 0.911 20 C -0.197 4.197 21 O -0.316 6.316 22 C 0.035 3.965 23 H 0.090 0.910 24 C -0.198 4.198 25 C -0.109 4.109 26 H 0.136 0.864 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.001 0.999 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.035 0.965 38 H 0.114 0.886 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.743 -2.681 18.374 23.101 hybrid contribution 1.167 1.827 -0.512 2.228 sum -12.576 -0.854 17.862 21.862 Atomic orbital electron populations 1.23942 0.94849 1.02725 1.00417 1.22830 0.96041 0.97632 1.00035 1.21094 0.93345 0.94982 0.94437 1.61717 1.14873 1.47803 1.01672 1.19940 0.90939 0.88671 0.95821 1.21244 1.13758 1.07369 1.12863 0.93992 1.25748 0.95375 1.01332 0.95991 1.70032 1.20272 1.39260 1.28981 0.85841 0.79351 0.79506 0.79024 1.19283 1.20430 1.17860 1.21953 0.96420 0.99024 0.88444 1.21941 0.94103 1.01362 0.88391 1.62200 1.40190 1.21030 1.02526 1.22906 0.95036 1.01204 0.91430 1.22247 0.96648 0.83918 0.93873 0.91080 1.21750 0.99411 1.01781 0.96743 1.87955 1.71363 1.30380 1.41940 1.22208 0.92922 0.96313 0.85086 0.91048 1.21754 1.01975 0.92839 1.03247 1.22939 0.99193 0.89350 0.99418 0.86408 0.88258 0.87706 0.91862 0.94866 0.99889 0.95645 0.92389 0.95880 0.89385 0.90218 0.96542 0.88586 0.95269 0.92567 0.90887 0.89157 0.92632 0.89484 0.90672 0.95570 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.47 14.32 67.79 0.97 -3.50 16 2 C -0.15 -4.60 8.76 25.65 0.22 -4.38 16 3 C 0.09 3.42 5.26 85.56 0.45 3.87 16 4 N -0.54 -22.15 4.41 -905.37 -3.99 -26.14 16 5 C 0.17 8.37 3.64 85.56 0.31 8.68 16 6 C -0.51 -29.74 8.84 25.60 0.23 -29.52 16 7 H 0.04 2.70 7.50 -2.91 -0.02 2.68 16 8 C 0.01 0.77 5.47 84.66 0.46 1.24 16 9 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 10 Si 0.94 44.40 27.47 68.60 1.88 46.29 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.25 -11.37 6.54 99.48 0.65 -10.71 16 14 C 0.07 2.34 4.61 86.30 0.40 2.74 16 15 C 0.07 2.25 4.89 86.30 0.42 2.67 16 16 N -0.53 -14.35 4.73 -895.23 -4.23 -18.58 16 17 C 0.02 0.53 4.93 86.31 0.43 0.96 16 18 C 0.09 1.86 3.43 30.63 0.10 1.96 16 19 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 20 C -0.14 -2.19 9.57 71.98 0.69 -1.50 16 21 O -0.40 -9.38 10.11 -148.98 -1.51 -10.89 16 22 C 0.09 1.97 3.43 30.63 0.10 2.08 16 23 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 24 C -0.14 -2.39 9.57 71.98 0.69 -1.70 16 25 C 0.02 0.49 4.72 86.32 0.41 0.89 16 26 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 27 H 0.10 2.27 7.84 -2.91 -0.02 2.25 16 28 H 0.10 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.06 2.88 6.59 -2.38 -0.02 2.86 16 30 H 0.03 1.19 7.71 -2.39 -0.02 1.17 16 31 H -0.02 -0.80 7.18 -2.39 -0.02 -0.82 16 32 H 0.03 1.23 5.87 -2.39 -0.01 1.21 16 33 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.02 0.77 6.69 -2.39 -0.02 0.75 16 35 H 0.09 2.73 7.17 -2.39 -0.02 2.72 16 36 H 0.08 2.63 8.04 -2.39 -0.02 2.61 16 37 H 0.02 0.59 6.74 -2.39 -0.02 0.58 16 38 H 0.10 2.06 8.09 -2.39 -0.02 2.04 16 39 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.09 2.17 6.50 -2.39 -0.02 2.16 16 Total: -1.00 -65.90 364.62 -0.82 -66.72 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.84 Total: 16.88 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 5.89 Total: -15.52 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -7.92 Total: -103.48 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.51 Total: -10.89 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.29 kcal Total: -65.90 -0.82 -66.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595502521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.802 kcal (2) G-P(sol) polarization free energy of solvation -65.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds