Wall clock time and date at job start Tue Mar 31 2020 06:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.99924 * 2 1 4 4 C 1.54316 * 109.98714 * 238.96685 * 2 1 3 5 5 H 1.08996 * 110.91949 * 144.63616 * 4 2 1 6 6 N 1.46898 * 110.74218 * 21.37757 * 4 2 1 7 7 C 1.46899 * 111.00089 * 76.93303 * 6 4 2 8 8 C 1.46897 * 111.00012 * 200.88676 * 6 4 2 9 9 C 1.55162 * 102.86133 * 263.04626 * 4 2 1 10 10 C 1.54904 * 101.58494 * 324.30253 * 9 4 2 11 11 N 1.47026 * 109.87987 * 121.08919 * 2 1 3 12 12 C 1.34773 * 125.65282 * 300.51450 * 11 2 1 13 13 O 1.21279 * 119.99846 * 359.71746 * 12 11 2 14 14 C 1.50699 * 120.00417 * 179.71827 * 12 11 2 15 15 C 1.52997 * 109.47231 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46998 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47243 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47099 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00152 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99456 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00289 * 359.72511 * 20 18 17 22 22 Si 1.86803 * 119.99500 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47157 * 269.72365 * 22 20 18 24 24 H 1.48504 * 109.47233 * 29.72405 * 22 20 18 25 25 H 1.48500 * 109.47359 * 149.72411 * 22 20 18 26 26 H 1.08997 * 109.47220 * 296.34362 * 1 2 3 27 27 H 1.09000 * 109.47471 * 56.34397 * 1 2 3 28 28 H 1.09008 * 109.46993 * 176.34614 * 1 2 3 29 29 H 1.09000 * 109.47188 * 66.20236 * 7 6 4 30 30 H 1.09001 * 109.47463 * 186.20817 * 7 6 4 31 31 H 1.09006 * 109.47176 * 306.20624 * 7 6 4 32 32 H 1.09006 * 109.47215 * 65.87879 * 8 6 4 33 33 H 1.09003 * 109.47103 * 185.87814 * 8 6 4 34 34 H 1.08995 * 109.47153 * 305.88245 * 8 6 4 35 35 H 1.09003 * 111.00175 * 206.22779 * 9 4 2 36 36 H 1.09000 * 111.03376 * 82.39791 * 9 4 2 37 37 H 1.08996 * 110.37048 * 278.17183 * 10 9 4 38 38 H 1.09000 * 110.46308 * 155.89297 * 10 9 4 39 39 H 1.09001 * 109.46895 * 59.99603 * 14 12 11 40 40 H 1.09003 * 109.47083 * 299.99974 * 14 12 11 41 41 H 1.08998 * 109.46856 * 60.00295 * 15 14 12 42 42 H 1.08998 * 109.47560 * 299.99735 * 15 14 12 43 43 H 1.09001 * 109.47004 * 59.99927 * 16 15 14 44 44 H 1.09003 * 109.47208 * 300.00154 * 16 15 14 45 45 H 1.08999 * 109.46898 * 59.99492 * 17 16 15 46 46 H 1.09003 * 109.46757 * 299.99956 * 17 16 15 47 47 H 0.96992 * 120.00244 * 0.27206 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0575 -0.7476 -1.2426 5 1 2.9708 -0.2850 -1.6166 6 7 1.0331 -0.7960 -2.2944 7 6 0.9284 0.4951 -2.9871 8 6 1.3052 -1.8827 -3.2447 9 6 2.3476 -2.1693 -0.6930 10 6 2.8524 -1.8530 0.7369 11 7 2.0300 -0.7140 1.1841 12 6 1.7742 -0.3851 2.4658 13 8 1.0808 0.5774 2.7181 14 6 2.3498 -1.2133 3.5855 15 6 1.9108 -0.6291 4.9297 16 6 2.4947 -1.4703 6.0665 17 6 2.0552 -0.8865 7.4107 18 6 2.6298 -1.7155 8.5304 19 1 3.2464 -2.5732 8.3057 20 6 2.3683 -1.3788 9.8416 21 7 1.6220 -0.3312 10.1152 22 14 3.0812 -2.4060 11.2295 23 1 2.1284 -3.4886 11.5839 24 1 4.3687 -3.0031 10.7926 25 1 3.3130 -1.5429 12.4155 26 1 -0.3633 0.4560 0.9209 27 1 -0.3634 0.5695 -0.8554 28 1 -0.3633 -1.0257 -0.0655 29 1 1.8504 0.6892 -3.5352 30 1 0.0906 0.4668 -3.6838 31 1 0.7665 1.2875 -2.2563 32 1 1.2053 -2.8424 -2.7375 33 1 0.5935 -1.8315 -4.0687 34 1 2.3186 -1.7807 -3.6328 35 1 3.1213 -2.6646 -1.2798 36 1 1.4386 -2.7701 -0.6626 37 1 3.9059 -1.5746 0.7145 38 1 2.7013 -2.7104 1.3927 39 1 3.4379 -1.2026 3.5230 40 1 1.9910 -2.2391 3.5002 41 1 0.8227 -0.6395 4.9924 42 1 2.2699 0.3965 5.0148 43 1 3.5829 -1.4604 6.0039 44 1 2.1352 -2.4959 5.9812 45 1 0.9671 -0.8967 7.4729 46 1 2.4144 0.1391 7.4962 47 1 1.2522 0.2024 9.3946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597700141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:13 Heat of formation + Delta-G solvation = -48.995535 kcal Electronic energy + Delta-G solvation = -22504.524323 eV Core-core repulsion = 19300.565602 eV Total energy + Delta-G solvation = -3203.958721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61666 -38.60667 -36.07444 -35.03503 -32.86605 -31.63726 -31.21124 -29.21035 -27.89510 -26.34625 -25.35947 -23.57788 -23.15955 -22.01703 -20.34447 -19.89175 -18.94875 -17.19798 -16.72496 -16.55956 -15.92321 -15.49012 -15.12927 -15.00572 -14.75559 -13.85408 -13.78239 -13.67066 -13.22520 -12.89703 -12.81982 -12.73939 -12.55733 -12.49604 -12.25760 -12.18850 -11.98020 -11.71717 -11.52948 -11.26638 -11.04366 -10.91787 -10.82212 -10.60329 -10.53361 -10.07591 -9.79013 -9.70604 -9.45338 -8.80782 -8.74937 -8.43312 -8.24292 -6.27937 -3.96354 2.73379 2.79943 3.47276 3.50325 3.51531 3.67168 3.98553 4.19683 4.60519 4.63946 4.67633 4.78630 4.84472 4.90088 4.93071 5.08597 5.17073 5.22275 5.28352 5.29099 5.34192 5.35574 5.44620 5.45185 5.47115 5.49487 5.66716 5.73508 5.81695 6.00680 6.08440 6.20648 6.28627 6.36938 6.48242 6.55643 6.58553 6.75659 6.92124 7.08250 7.45677 7.53627 7.66456 8.25175 8.31930 8.55722 8.97626 9.76408 11.12927 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046873 B = 0.002507 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.220785 B =11164.909146 C =11570.631552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.144 3.856 3 H 0.068 0.932 4 C 0.072 3.928 5 H 0.059 0.941 6 N -0.532 5.532 7 C 0.020 3.980 8 C 0.023 3.977 9 C -0.128 4.128 10 C 0.100 3.900 11 N -0.622 5.622 12 C 0.530 3.470 13 O -0.532 6.532 14 C -0.133 4.133 15 C -0.104 4.104 16 C -0.102 4.102 17 C 0.006 3.994 18 C -0.601 4.601 19 H 0.048 0.952 20 C 0.011 3.989 21 N -0.915 5.915 22 Si 1.072 2.928 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.285 1.285 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.007 0.993 46 H 0.007 0.993 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.112 -3.659 -30.505 30.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.040 3.960 3 H 0.086 0.914 4 C -0.037 4.037 5 H 0.077 0.923 6 N -0.256 5.256 7 C -0.128 4.128 8 C -0.125 4.125 9 C -0.166 4.166 10 C -0.024 4.024 11 N -0.358 5.358 12 C 0.320 3.680 13 O -0.407 6.407 14 C -0.173 4.173 15 C -0.142 4.142 16 C -0.140 4.140 17 C -0.031 4.031 18 C -0.639 4.639 19 H 0.066 0.934 20 C -0.192 4.192 21 N -0.552 5.552 22 Si 0.900 3.100 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.210 1.210 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.025 0.975 46 H 0.025 0.975 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.348 -3.332 -28.404 28.631 hybrid contribution 0.823 0.230 -2.258 2.414 sum 2.171 -3.102 -30.662 30.895 Atomic orbital electron populations 1.21891 0.93553 1.02562 1.02060 1.21397 0.95978 0.95098 0.83505 0.91397 1.22721 0.92707 0.96543 0.91720 0.92322 1.62002 1.46067 1.04854 1.12680 1.22491 1.00582 0.91159 0.98611 1.22415 0.99440 0.95040 0.95574 1.22941 1.02317 0.96205 0.95183 1.22298 0.95053 0.89686 0.95325 1.48643 1.51638 1.30424 1.05138 1.20738 0.80152 0.85192 0.81929 1.90691 1.38263 1.28761 1.83016 1.21760 1.01869 0.99808 0.93858 1.21469 1.01360 0.99963 0.91416 1.21512 0.99250 0.98156 0.95097 1.19229 0.95996 0.96077 0.91770 1.22110 1.34564 1.14516 0.92753 0.93397 1.25864 0.95810 0.97770 0.99758 1.70726 1.31715 1.16225 1.36525 0.83512 0.75726 0.75276 0.75438 1.21514 1.21558 1.21039 0.91951 0.91592 0.92344 0.95560 0.91038 0.90932 0.90931 0.91324 0.95577 0.89951 0.89370 0.91239 0.89955 0.89284 0.89236 0.91839 0.91865 0.93342 0.93329 0.97498 0.97502 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.31 37.16 0.31 -1.32 16 2 C 0.14 1.53 2.97 -66.95 -0.20 1.33 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.07 0.55 2.58 -65.88 -0.17 0.38 16 5 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 6 N -0.53 -3.77 3.66 -240.96 -0.88 -4.65 16 7 C 0.02 0.12 8.75 60.06 0.53 0.65 16 8 C 0.02 0.12 9.00 60.06 0.54 0.66 16 9 C -0.13 -0.83 5.11 -24.58 -0.13 -0.95 16 10 C 0.10 0.79 6.70 -2.53 -0.02 0.78 16 11 N -0.62 -7.25 3.08 -163.02 -0.50 -7.75 16 12 C 0.53 8.01 7.63 -10.99 -0.08 7.93 16 13 O -0.53 -10.13 14.83 5.56 0.08 -10.05 16 14 C -0.13 -1.89 4.70 -27.88 -0.13 -2.02 16 15 C -0.10 -1.93 4.50 -26.73 -0.12 -2.05 16 16 C -0.10 -2.19 5.15 -26.73 -0.14 -2.32 16 17 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 18 C -0.60 -17.83 9.11 -34.44 -0.31 -18.14 16 19 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 20 C 0.01 0.34 5.46 -17.82 -0.10 0.25 16 21 N -0.92 -29.23 13.65 55.43 0.76 -28.47 16 22 Si 1.07 26.09 29.90 -169.99 -5.08 21.01 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H 0.06 0.90 6.63 -51.93 -0.34 0.55 16 27 H 0.07 0.66 5.87 -51.93 -0.30 0.36 16 28 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.49 6.50 -51.93 -0.34 0.15 16 32 H 0.07 0.37 6.76 -51.93 -0.35 0.01 16 33 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.03 0.13 8.12 -51.93 -0.42 -0.29 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.62 7.58 -51.93 -0.39 0.23 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.60 7.47 -51.93 -0.39 0.21 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.12 7.85 -51.93 -0.41 0.71 16 41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 46 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 47 H 0.27 8.63 7.22 -40.82 -0.29 8.33 16 LS Contribution 364.07 15.07 5.49 5.49 Total: -1.00 -34.72 364.07 -9.04 -43.76 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -8.76 Total: -4.54 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.14 Total: -14.80 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.63 Total: -40.87 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.08 Total: 21.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.72 -9.04 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597700141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.235 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds