Wall clock time and date at job start Tue Mar 31 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.99787 * 2 1 4 4 C 1.54338 * 109.98807 * 238.96531 * 2 1 3 5 5 H 1.08994 * 110.51614 * 336.97622 * 4 2 1 6 6 N 1.46901 * 111.00168 * 100.12741 * 4 2 1 7 7 C 1.46893 * 110.99842 * 175.23361 * 6 4 2 8 8 C 1.46897 * 110.99836 * 299.18706 * 6 4 2 9 9 C 1.55153 * 103.01659 * 218.66259 * 4 2 1 10 10 C 1.54913 * 101.58565 * 35.31015 * 9 4 2 11 11 N 1.47020 * 109.88257 * 121.09883 * 2 1 3 12 12 C 1.34773 * 125.64653 * 298.38965 * 11 2 1 13 13 O 1.21283 * 120.00360 * 359.44611 * 12 11 2 14 14 C 1.50706 * 120.00081 * 179.71886 * 12 11 2 15 15 C 1.52998 * 109.47348 * 179.72561 * 14 12 11 16 16 C 1.52996 * 109.46929 * 179.97438 * 15 14 12 17 17 C 1.53008 * 109.46808 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46847 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99683 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99722 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00073 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99682 * 22 20 18 24 24 H 1.48498 * 109.47278 * 210.00111 * 22 20 18 25 25 H 1.48507 * 109.46754 * 329.99942 * 22 20 18 26 26 H 1.09008 * 109.46762 * 300.36097 * 1 2 3 27 27 H 1.08996 * 109.47383 * 60.35394 * 1 2 3 28 28 H 1.08998 * 109.47337 * 180.35995 * 1 2 3 29 29 H 1.08999 * 109.47224 * 60.00056 * 7 6 4 30 30 H 1.09003 * 109.47333 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47101 * 299.99484 * 7 6 4 32 32 H 1.08996 * 109.47395 * 60.00127 * 8 6 4 33 33 H 1.09002 * 109.47224 * 180.02562 * 8 6 4 34 34 H 1.09002 * 109.47262 * 300.00319 * 8 6 4 35 35 H 1.08997 * 111.00767 * 277.23119 * 9 4 2 36 36 H 1.09007 * 111.03534 * 153.39880 * 9 4 2 37 37 H 1.08996 * 110.37051 * 204.15273 * 10 9 4 38 38 H 1.08999 * 110.46118 * 81.86575 * 10 9 4 39 39 H 1.09001 * 109.46564 * 299.73030 * 14 12 11 40 40 H 1.08998 * 109.47012 * 59.72084 * 14 12 11 41 41 H 1.09000 * 109.46986 * 300.00089 * 15 14 12 42 42 H 1.09002 * 109.46857 * 60.00224 * 15 14 12 43 43 H 1.09000 * 109.47441 * 299.99910 * 16 15 14 44 44 H 1.08994 * 109.47235 * 60.00181 * 16 15 14 45 45 H 1.08996 * 109.46961 * 299.99496 * 17 16 15 46 46 H 1.08994 * 109.47402 * 59.99882 * 17 16 15 47 47 H 0.96999 * 120.00128 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3053 -1.4405 -1.6197 6 7 2.4642 0.1964 -2.2921 7 6 3.0705 -0.5091 -3.4290 8 6 1.3284 1.0196 -2.7285 9 6 3.2863 -1.5183 -0.6916 10 6 2.8099 -1.8826 0.7368 11 7 2.0300 -0.7141 1.1839 12 6 1.8074 -0.3621 2.4656 13 8 1.1518 0.6265 2.7179 14 6 2.3785 -1.1934 3.5854 15 6 1.9869 -0.5765 4.9296 16 6 2.5661 -1.4209 6.0664 17 6 2.1739 -0.8042 7.4106 18 6 2.7450 -1.6356 8.5304 19 1 3.3288 -2.5160 8.3057 20 6 2.5220 -1.2723 9.8416 21 7 1.8115 -0.2000 10.1151 22 14 3.2304 -2.3024 11.2296 23 1 4.5825 -1.7981 11.5799 24 1 2.3441 -2.2091 12.4174 25 1 3.3278 -3.7190 10.7946 26 1 -0.3633 0.5195 0.8868 27 1 -0.3634 0.5083 -0.8931 28 1 -0.3634 -1.0276 0.0065 29 1 2.3482 -1.2089 -3.8493 30 1 3.3627 0.2134 -4.1910 31 1 3.9508 -1.0552 -3.0900 32 1 0.9422 1.5848 -1.8803 33 1 1.6570 1.7094 -3.5059 34 1 0.5430 0.3751 -3.1234 35 1 4.1669 -0.8768 -0.6581 36 1 3.4813 -2.4155 -1.2791 37 1 3.6655 -2.0412 1.3931 38 1 2.1805 -2.7722 0.7132 39 1 1.9842 -2.2077 3.5224 40 1 3.4648 -1.2201 3.5006 41 1 2.3812 0.4377 4.9925 42 1 0.9005 -0.5499 5.0144 43 1 2.1714 -2.4350 6.0033 44 1 3.6524 -1.4479 5.9818 45 1 2.5683 0.2099 7.4740 46 1 1.0875 -0.7775 7.4950 47 1 1.6543 0.0554 11.0376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597700143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:16 Heat of formation + Delta-G solvation = -49.952194 kcal Electronic energy + Delta-G solvation = -22413.661904 eV Core-core repulsion = 19209.661699 eV Total energy + Delta-G solvation = -3204.000205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54955 -38.52459 -36.06115 -34.84987 -32.67885 -31.86541 -31.20334 -29.37510 -27.82570 -26.44986 -25.67254 -23.39532 -23.09158 -21.80023 -20.51735 -19.93500 -18.85020 -17.28333 -16.71867 -16.13770 -15.68705 -15.42703 -15.04318 -14.79540 -14.58352 -14.37477 -13.98316 -13.69876 -13.37426 -13.03915 -12.79853 -12.66694 -12.55467 -12.37912 -12.15725 -11.94860 -11.72876 -11.70586 -11.54290 -11.51131 -11.24467 -10.95686 -10.88855 -10.49618 -10.47036 -10.36336 -9.69000 -9.57161 -9.18069 -8.94774 -8.82709 -8.73088 -8.27723 -5.92462 -3.94893 2.76724 2.82277 3.35886 3.41748 3.44984 3.53309 4.01611 4.21811 4.51154 4.68678 4.70812 4.79306 4.90914 4.93843 4.94899 5.11008 5.15667 5.18134 5.24725 5.32942 5.35222 5.37727 5.42668 5.46099 5.47503 5.49138 5.56984 5.75114 5.81493 5.90645 6.06812 6.18716 6.25455 6.37790 6.53745 6.59360 6.62641 6.88579 7.06136 7.23962 7.48977 7.77378 7.93841 8.09298 8.28882 8.51011 9.12875 9.68552 11.18880 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044611 B = 0.002503 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.498535 B =11184.946680 C =11606.910152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 H 0.084 0.916 4 C 0.073 3.927 5 H 0.058 0.942 6 N -0.537 5.537 7 C 0.024 3.976 8 C 0.018 3.982 9 C -0.126 4.126 10 C 0.100 3.900 11 N -0.621 5.621 12 C 0.530 3.470 13 O -0.532 6.532 14 C -0.133 4.133 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.519 4.519 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 -3.224 -29.938 30.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 H 0.102 0.898 4 C -0.036 4.036 5 H 0.076 0.924 6 N -0.261 5.261 7 C -0.124 4.124 8 C -0.130 4.130 9 C -0.164 4.164 10 C -0.023 4.023 11 N -0.358 5.358 12 C 0.320 3.680 13 O -0.407 6.407 14 C -0.173 4.173 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.018 4.018 18 C -0.558 4.558 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.404 -2.239 -29.357 29.476 hybrid contribution -0.248 -1.141 0.357 1.221 sum 1.156 -3.379 -29.000 29.219 Atomic orbital electron populations 1.22259 0.94868 1.02237 1.03180 1.21417 0.94051 0.97006 0.83696 0.89763 1.22761 0.96518 0.92868 0.91456 0.92375 1.61986 1.30112 1.23365 1.10603 1.22395 0.99212 0.98007 0.92773 1.22530 0.91891 0.97324 1.01298 1.22872 0.98217 1.00328 0.95000 1.22306 0.95747 0.88884 0.95374 1.48617 1.53653 1.28452 1.05061 1.20795 0.79825 0.85509 0.81911 1.90695 1.39765 1.27288 1.82988 1.21781 1.01894 0.99716 0.93921 1.21460 1.01587 0.99841 0.91232 1.21642 0.99126 0.98135 0.95815 1.19099 0.96792 0.96072 0.89789 1.21285 1.32659 1.10702 0.91119 0.92768 1.25046 0.95395 0.95246 0.98938 1.69977 1.39632 1.24825 1.19050 0.86611 0.78917 0.80679 0.81873 1.20714 1.21277 1.19938 0.90652 0.91875 0.92681 0.95595 0.91178 0.91019 0.90672 0.91166 0.95442 0.89322 0.89999 0.89866 0.91307 0.89308 0.89249 0.91784 0.91832 0.93521 0.93496 0.96583 0.96594 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 8.88 37.16 0.33 -1.42 16 2 C 0.14 1.51 2.38 -66.95 -0.16 1.35 16 3 H 0.08 1.05 7.62 -51.93 -0.40 0.66 16 4 C 0.07 0.57 2.19 -65.87 -0.14 0.43 16 5 H 0.06 0.44 7.84 -51.93 -0.41 0.04 16 6 N -0.54 -4.07 4.85 -240.96 -1.17 -5.24 16 7 C 0.02 0.14 9.36 60.06 0.56 0.70 16 8 C 0.02 0.12 8.53 60.06 0.51 0.63 16 9 C -0.13 -0.85 5.45 -24.58 -0.13 -0.98 16 10 C 0.10 0.81 6.69 -2.53 -0.02 0.79 16 11 N -0.62 -7.26 3.06 -163.01 -0.50 -7.76 16 12 C 0.53 7.99 7.64 -10.98 -0.08 7.90 16 13 O -0.53 -10.10 15.04 5.56 0.08 -10.02 16 14 C -0.13 -1.89 4.71 -27.88 -0.13 -2.02 16 15 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 16 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 17 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 18 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 19 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.82 13.29 55.43 0.74 -27.08 16 22 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 26 H 0.07 1.01 6.90 -51.92 -0.36 0.65 16 27 H 0.06 0.54 6.23 -51.93 -0.32 0.21 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.07 0.36 7.15 -51.93 -0.37 -0.01 16 32 H 0.07 0.56 5.85 -51.93 -0.30 0.26 16 33 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 34 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.08 0.60 7.47 -51.93 -0.39 0.22 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.11 7.84 -51.93 -0.41 0.70 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -33.91 367.01 -9.24 -43.15 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -8.83 Total: -5.01 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.07 Total: -10.65 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: -0.93 Total: -40.09 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.91 -9.24 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597700143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.805 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds