Wall clock time and date at job start Tue Mar 31 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.41295 * 2 1 4 4 C 1.55132 * 110.34189 * 122.43822 * 2 1 3 5 5 H 1.09001 * 111.22544 * 37.94603 * 4 2 1 6 6 N 1.46898 * 110.90771 * 274.03959 * 4 2 1 7 7 C 1.46903 * 110.99977 * 183.22836 * 6 4 2 8 8 C 1.46898 * 110.99949 * 307.18433 * 6 4 2 9 9 C 1.55153 * 101.48546 * 156.06009 * 4 2 1 10 10 C 1.54327 * 102.94329 * 324.33336 * 9 4 2 11 11 N 1.47027 * 107.26895 * 22.19276 * 10 9 4 12 12 C 1.34771 * 125.64811 * 181.01869 * 11 10 9 13 13 O 1.21280 * 120.00118 * 180.02562 * 12 11 10 14 14 C 1.50706 * 120.00190 * 0.03099 * 12 11 10 15 15 C 1.52991 * 109.47423 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47410 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47452 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47341 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99984 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99979 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00397 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99912 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47185 * 270.00372 * 22 20 18 24 24 H 1.48508 * 109.47158 * 150.00455 * 22 20 18 25 25 H 1.48493 * 109.47237 * 30.00226 * 22 20 18 26 26 H 1.09006 * 109.46720 * 180.84693 * 1 2 3 27 27 H 1.09000 * 109.47096 * 300.84501 * 1 2 3 28 28 H 1.08997 * 109.47199 * 60.84740 * 1 2 3 29 29 H 1.09005 * 109.47114 * 60.00156 * 7 6 4 30 30 H 1.08998 * 109.46907 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47422 * 300.00066 * 7 6 4 32 32 H 1.08995 * 109.47162 * 66.37031 * 8 6 4 33 33 H 1.09007 * 109.46570 * 186.36965 * 8 6 4 34 34 H 1.08992 * 109.47052 * 306.36603 * 8 6 4 35 35 H 1.08994 * 110.72481 * 205.97349 * 9 4 2 36 36 H 1.09002 * 110.72008 * 82.69267 * 9 4 2 37 37 H 1.08994 * 109.88507 * 262.77311 * 10 9 4 38 38 H 1.09006 * 110.01271 * 141.67580 * 10 9 4 39 39 H 1.09000 * 109.47444 * 59.99035 * 14 12 11 40 40 H 1.09004 * 109.46456 * 299.99613 * 14 12 11 41 41 H 1.09007 * 109.47225 * 59.99719 * 15 14 12 42 42 H 1.09007 * 109.47351 * 300.00018 * 15 14 12 43 43 H 1.08999 * 109.47358 * 60.00148 * 16 15 14 44 44 H 1.08999 * 109.47133 * 299.99869 * 16 15 14 45 45 H 1.09000 * 109.47174 * 59.99793 * 17 16 15 46 46 H 1.09003 * 109.46938 * 300.00612 * 17 16 15 47 47 H 0.97007 * 119.99821 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0693 -0.7802 1.2276 5 1 1.4552 -1.6554 1.4398 6 7 2.1609 0.0934 2.4051 7 6 2.7429 -0.6229 3.5480 8 6 2.9269 1.3092 2.1002 9 6 3.4797 -1.1972 0.7335 10 6 3.2525 -1.4725 -0.7680 11 7 2.0431 -0.7385 -1.1682 12 6 1.4973 -0.7363 -2.4004 13 8 0.4938 -0.0909 -2.6181 14 6 2.1338 -1.5361 -3.5079 15 6 1.3226 -1.3627 -4.7934 16 6 1.9691 -2.1741 -5.9179 17 6 1.1575 -2.0012 -7.2033 18 6 1.7947 -2.7999 -8.3110 19 1 2.6889 -3.3738 -8.1175 20 6 1.2356 -2.7988 -9.5713 21 7 0.1465 -2.1003 -9.8069 22 14 2.0250 -3.7894 -10.9442 23 1 3.0189 -2.9456 -11.6551 24 1 0.9782 -4.2327 -11.8998 25 1 2.7054 -4.9775 -10.3692 26 1 -0.3633 -1.0276 0.0152 27 1 -0.3633 0.5269 0.8823 28 1 -0.3633 0.5006 -0.8975 29 1 3.7443 -0.9670 3.2894 30 1 2.7996 0.0471 4.4059 31 1 2.1171 -1.4800 3.7966 32 1 2.3779 1.9129 1.3776 33 1 3.0762 1.8833 3.0147 34 1 3.8950 1.0333 1.6823 35 1 3.8163 -2.0993 1.2442 36 1 4.1930 -0.3848 0.8729 37 1 3.1091 -2.5405 -0.9315 38 1 4.1076 -1.1208 -1.3453 39 1 2.1532 -2.5899 -3.2302 40 1 3.1526 -1.1844 -3.6706 41 1 1.3029 -0.3088 -5.0713 42 1 0.3038 -1.7145 -4.6305 43 1 1.9891 -3.2280 -5.6404 44 1 2.9877 -1.8218 -6.0808 45 1 1.1371 -0.9474 -7.4811 46 1 0.1390 -2.3536 -7.0401 47 1 -0.2637 -1.5862 -9.0939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597700145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:18 Heat of formation + Delta-G solvation = -46.753587 kcal Electronic energy + Delta-G solvation = -22534.946461 eV Core-core repulsion = 19331.084959 eV Total energy + Delta-G solvation = -3203.861503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.74122 -38.70033 -35.97080 -35.06119 -32.91899 -31.75717 -31.06735 -29.21213 -28.12040 -26.29760 -25.33013 -23.74025 -23.26737 -21.93472 -20.33280 -20.03091 -18.94714 -17.37014 -16.74864 -16.57140 -15.79686 -15.44672 -15.10455 -14.76888 -14.66447 -14.34087 -13.87657 -13.69652 -13.37248 -13.13680 -12.85244 -12.62323 -12.41981 -12.32206 -12.24209 -12.17715 -12.13869 -11.96365 -11.60319 -11.35150 -11.08698 -10.96340 -10.88340 -10.60534 -10.54736 -10.08476 -9.72922 -9.72060 -9.37736 -8.86021 -8.68640 -8.44446 -8.25316 -6.28981 -3.97463 2.68301 2.76815 3.46500 3.47872 3.50707 3.66390 4.06101 4.20298 4.42479 4.59654 4.64554 4.68574 4.79129 4.87674 4.93987 5.04491 5.10538 5.16117 5.26688 5.26948 5.29817 5.34911 5.42816 5.48244 5.51091 5.51988 5.64902 5.66458 5.79373 5.95229 6.06517 6.09661 6.22278 6.39594 6.45686 6.52701 6.56367 6.73818 6.90214 7.06642 7.42197 7.52195 7.65025 8.22188 8.30693 8.54554 8.96524 9.75296 11.11833 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045239 B = 0.002528 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.780058 B =11075.035531 C =11458.713175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.079 0.921 4 C 0.075 3.925 5 H 0.101 0.899 6 N -0.531 5.531 7 C 0.024 3.976 8 C 0.011 3.989 9 C -0.171 4.171 10 C 0.105 3.895 11 N -0.625 5.625 12 C 0.531 3.469 13 O -0.529 6.529 14 C -0.134 4.134 15 C -0.104 4.104 16 C -0.103 4.103 17 C 0.006 3.994 18 C -0.601 4.601 19 H 0.048 0.952 20 C 0.011 3.989 21 N -0.915 5.915 22 Si 1.072 2.928 23 H -0.288 1.288 24 H -0.284 1.284 25 H -0.289 1.289 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.007 0.993 46 H 0.007 0.993 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.547 3.026 28.835 30.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.035 4.035 5 H 0.119 0.881 6 N -0.254 5.254 7 C -0.125 4.125 8 C -0.137 4.137 9 C -0.210 4.210 10 C -0.018 4.018 11 N -0.362 5.362 12 C 0.321 3.679 13 O -0.404 6.404 14 C -0.173 4.173 15 C -0.142 4.142 16 C -0.140 4.140 17 C -0.031 4.031 18 C -0.640 4.640 19 H 0.066 0.934 20 C -0.192 4.192 21 N -0.552 5.552 22 Si 0.900 3.100 23 H -0.215 1.215 24 H -0.210 1.210 25 H -0.216 1.216 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.025 0.975 46 H 0.025 0.975 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.333 3.117 27.168 28.312 hybrid contribution 1.230 0.063 1.551 1.980 sum 8.563 3.180 28.719 30.137 Atomic orbital electron populations 1.22111 0.93233 1.02617 1.03770 1.21966 0.95934 0.95264 0.83372 0.90373 1.23105 0.95102 0.95803 0.89456 0.88131 1.62073 1.51801 1.06414 1.05077 1.22393 0.97751 0.99059 0.93250 1.22591 0.96456 0.92577 1.02079 1.23319 0.99392 1.02822 0.95469 1.21914 0.87929 0.97090 0.94917 1.48665 1.28299 1.49587 1.09601 1.20725 0.83917 0.81544 0.81726 1.90650 1.24980 1.43365 1.81453 1.21768 1.01088 1.00216 0.94263 1.21469 0.98979 1.01532 0.92211 1.21510 0.99181 0.98091 0.95242 1.19227 0.95180 0.96506 0.92144 1.22106 1.13422 1.31897 0.96535 0.93409 1.25864 0.95879 0.97719 0.99735 1.70734 1.19144 1.28627 1.36658 0.83511 0.75470 0.75648 0.75327 1.21517 1.21022 1.21560 0.92906 0.91701 0.89464 0.95256 0.91173 0.91219 0.90752 0.91180 0.94744 0.89868 0.90047 0.91060 0.91177 0.89277 0.89311 0.91846 0.91815 0.93345 0.93353 0.97509 0.97486 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.71 37.16 0.32 -1.55 16 2 C 0.14 1.43 3.20 -66.30 -0.21 1.21 16 3 H 0.08 0.82 5.66 -51.93 -0.29 0.53 16 4 C 0.08 0.59 2.65 -65.45 -0.17 0.41 16 5 H 0.10 0.82 8.07 -51.93 -0.42 0.40 16 6 N -0.53 -3.81 5.10 -240.44 -1.23 -5.03 16 7 C 0.02 0.13 9.39 60.07 0.56 0.69 16 8 C 0.01 0.07 8.84 60.06 0.53 0.60 16 9 C -0.17 -1.09 5.31 -24.90 -0.13 -1.23 16 10 C 0.11 0.85 6.49 -3.06 -0.02 0.83 16 11 N -0.62 -7.13 3.24 -162.91 -0.53 -7.66 16 12 C 0.53 7.83 7.63 -10.98 -0.08 7.75 16 13 O -0.53 -9.69 13.63 5.56 0.08 -9.62 16 14 C -0.13 -1.88 4.89 -27.88 -0.14 -2.01 16 15 C -0.10 -1.91 4.50 -26.74 -0.12 -2.03 16 16 C -0.10 -2.18 5.15 -26.73 -0.14 -2.31 16 17 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 18 C -0.60 -17.79 9.11 -34.44 -0.31 -18.10 16 19 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 20 C 0.01 0.34 5.46 -17.82 -0.10 0.25 16 21 N -0.92 -29.15 13.65 55.43 0.76 -28.39 16 22 Si 1.07 26.04 29.90 -169.99 -5.08 20.96 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.27 5.89 -51.93 -0.31 0.97 16 29 H 0.03 0.14 7.28 -51.93 -0.38 -0.24 16 30 H 0.07 0.33 8.05 -51.93 -0.42 -0.09 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.53 6.24 -51.93 -0.32 0.20 16 33 H 0.07 0.37 8.01 -51.93 -0.42 -0.04 16 34 H 0.03 0.21 5.77 -51.93 -0.30 -0.09 16 35 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.08 0.50 5.73 -51.93 -0.30 0.20 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.23 8.10 -51.92 -0.42 0.81 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 46 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 47 H 0.27 8.60 7.22 -40.82 -0.29 8.30 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -34.12 361.72 -9.23 -43.35 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -8.55 Total: -3.61 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -0.13 Total: -15.44 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -1.00 Total: -41.08 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.12 -9.23 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597700145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.406 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds