Wall clock time and date at job start Tue Mar 31 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.87187 * 2 1 4 4 C 1.54323 * 109.87824 * 121.01562 * 2 1 3 5 5 H 1.09004 * 110.71871 * 215.76304 * 4 2 1 6 6 N 1.46899 * 110.72277 * 338.86046 * 4 2 1 7 7 C 1.46900 * 110.99679 * 165.25940 * 6 4 2 8 8 C 1.46898 * 110.99833 * 289.21199 * 6 4 2 9 9 C 1.55158 * 102.94380 * 97.22741 * 4 2 1 10 10 C 1.54911 * 101.57852 * 35.49511 * 9 4 2 11 11 N 1.47024 * 109.88143 * 238.82411 * 2 1 3 12 12 C 1.34766 * 125.64798 * 59.47997 * 11 2 1 13 13 O 1.21287 * 120.00449 * 359.97438 * 12 11 2 14 14 C 1.50704 * 119.99905 * 179.97438 * 12 11 2 15 15 C 1.53003 * 109.46988 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.46965 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47415 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47152 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00183 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99731 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00116 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00070 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47415 * 59.99649 * 22 20 18 24 24 H 1.48497 * 109.47258 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46877 * 300.00029 * 22 20 18 26 26 H 1.08996 * 109.47083 * 305.47924 * 1 2 3 27 27 H 1.08996 * 109.47113 * 65.47430 * 1 2 3 28 28 H 1.09003 * 109.47074 * 185.47390 * 1 2 3 29 29 H 1.08999 * 109.47530 * 60.00050 * 7 6 4 30 30 H 1.09005 * 109.46635 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46953 * 299.99505 * 7 6 4 32 32 H 1.08993 * 109.47099 * 51.76936 * 8 6 4 33 33 H 1.08996 * 109.47009 * 171.77049 * 8 6 4 34 34 H 1.09004 * 109.47433 * 291.76904 * 8 6 4 35 35 H 1.08996 * 111.00606 * 153.57316 * 9 4 2 36 36 H 1.09000 * 111.00130 * 277.42684 * 9 4 2 37 37 H 1.09002 * 110.36252 * 81.83844 * 10 9 4 38 38 H 1.09001 * 110.36523 * 204.04368 * 10 9 4 39 39 H 1.09006 * 109.46740 * 299.99550 * 14 12 11 40 40 H 1.08999 * 109.47468 * 59.99748 * 14 12 11 41 41 H 1.08996 * 109.47369 * 299.99751 * 15 14 12 42 42 H 1.08999 * 109.47257 * 60.00386 * 15 14 12 43 43 H 1.08997 * 109.47619 * 300.00133 * 16 15 14 44 44 H 1.09008 * 109.47138 * 59.99669 * 16 15 14 45 45 H 1.08997 * 109.47065 * 300.00754 * 17 16 15 46 46 H 1.09002 * 109.46454 * 60.00292 * 17 16 15 47 47 H 0.97001 * 120.00165 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0547 -0.7478 1.2438 5 1 2.9639 -0.2791 1.6205 6 7 1.0263 -0.7995 2.2915 7 6 1.3730 -1.7886 3.3209 8 6 0.8135 0.5267 2.8861 9 6 2.3518 -2.1685 0.6955 10 6 2.8567 -1.8508 -0.7342 11 7 2.0300 -0.7157 -1.1829 12 6 1.7741 -0.3888 -2.4651 13 8 1.0760 0.5699 -2.7188 14 6 2.3554 -1.2147 -3.5837 15 6 1.9141 -0.6341 -4.9287 16 6 2.5048 -1.4721 -6.0643 17 6 2.0630 -0.8920 -7.4094 18 6 2.6454 -1.7171 -8.5279 19 1 3.2680 -2.5702 -8.3021 20 6 2.3833 -1.3828 -9.8397 21 7 1.6248 -0.3443 -10.1147 22 14 3.1046 -2.4059 -11.2262 23 1 2.6240 -3.8063 -11.1099 24 1 2.6769 -1.8421 -12.5317 25 1 4.5868 -2.3825 -11.1392 26 1 -0.3633 0.5964 0.8368 27 1 -0.3633 0.4266 -0.9349 28 1 -0.3633 -1.0230 0.0980 29 1 2.3247 -1.5185 3.7784 30 1 0.5947 -1.8067 4.0839 31 1 1.4562 -2.7746 2.8639 32 1 0.6332 1.2548 2.0952 33 1 -0.0490 0.4923 3.5517 34 1 1.6982 0.8173 3.4526 35 1 3.1269 -2.6601 1.2834 36 1 1.4451 -2.7727 0.6643 37 1 3.9091 -1.5678 -0.7106 38 1 2.7105 -2.7106 -1.3879 39 1 3.4435 -1.1981 -3.5198 40 1 2.0020 -2.2422 -3.4983 41 1 0.8261 -0.6509 -4.9923 42 1 2.2673 0.3935 -5.0144 43 1 3.5928 -1.4550 -6.0007 44 1 2.1521 -2.5000 -5.9789 45 1 0.9750 -0.9095 -7.4729 46 1 2.4155 0.1359 -7.4951 47 1 1.4407 -0.1090 -11.0375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597700147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:21 Heat of formation + Delta-G solvation = -43.166253 kcal Electronic energy + Delta-G solvation = -22476.755490 eV Core-core repulsion = 19273.049546 eV Total energy + Delta-G solvation = -3203.705944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58848 -38.56361 -36.03083 -34.84413 -32.65402 -31.65923 -31.18596 -29.35543 -27.82957 -26.34548 -25.67476 -23.61704 -23.13295 -21.92861 -20.12358 -19.81930 -18.89808 -17.12785 -16.66604 -16.12341 -15.89488 -15.43447 -15.07869 -14.98607 -14.73183 -14.39784 -13.77821 -13.74938 -13.14092 -12.78238 -12.75410 -12.58400 -12.51889 -12.44581 -12.17727 -11.94220 -11.70013 -11.58152 -11.52369 -11.39491 -11.20289 -10.94060 -10.80523 -10.50681 -10.47202 -10.35703 -9.65316 -9.56563 -9.17415 -8.95279 -8.79277 -8.70845 -8.27175 -5.92020 -3.94529 2.78611 2.84134 3.37363 3.41607 3.43901 3.53620 4.01707 4.23153 4.51404 4.67949 4.70152 4.82721 4.87995 4.93142 4.97210 5.11453 5.19528 5.25648 5.33010 5.35771 5.38462 5.40018 5.43013 5.47510 5.49125 5.49372 5.70399 5.76342 5.89197 6.03322 6.19082 6.27752 6.34940 6.41922 6.58216 6.59713 6.61579 6.88997 7.06607 7.24336 7.50506 7.77426 7.94214 8.09669 8.30542 8.51350 9.13026 9.68786 11.19285 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047059 B = 0.002501 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.850411 B =11192.753002 C =11606.814048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.143 3.857 3 H 0.068 0.932 4 C 0.072 3.928 5 H 0.057 0.943 6 N -0.532 5.532 7 C 0.023 3.977 8 C 0.017 3.983 9 C -0.127 4.127 10 C 0.100 3.900 11 N -0.622 5.622 12 C 0.530 3.470 13 O -0.531 6.531 14 C -0.133 4.133 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.026 0.974 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 -3.165 30.023 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.040 3.960 3 H 0.086 0.914 4 C -0.037 4.037 5 H 0.075 0.925 6 N -0.256 5.256 7 C -0.125 4.125 8 C -0.131 4.131 9 C -0.165 4.165 10 C -0.023 4.023 11 N -0.358 5.358 12 C 0.320 3.680 13 O -0.407 6.407 14 C -0.173 4.173 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.910 -2.656 29.422 29.556 hybrid contribution 1.246 -0.308 -0.306 1.319 sum 2.156 -2.964 29.116 29.346 Atomic orbital electron populations 1.21990 0.93640 1.02721 1.02220 1.21395 0.95966 0.95081 0.83608 0.91390 1.22712 0.92713 0.96602 0.91704 0.92492 1.62019 1.43805 1.07585 1.12142 1.22413 0.99402 0.96270 0.94406 1.22547 1.00596 0.90370 0.99615 1.22905 1.02271 0.96159 0.95135 1.22291 0.94958 0.89788 0.95301 1.48628 1.51504 1.30576 1.05119 1.20780 0.80223 0.85141 0.81892 1.90694 1.38085 1.28931 1.82959 1.21781 1.01772 0.99800 0.93968 1.21459 1.01392 1.00040 0.91226 1.21644 0.99096 0.98143 0.95836 1.19092 0.96669 0.96186 0.89767 1.21248 1.30628 1.12847 0.91130 0.92824 1.25045 0.95359 0.95274 0.98921 1.69966 1.37754 1.26654 1.19108 0.86670 0.79470 0.80495 0.81404 1.20291 1.21338 1.20309 0.91541 0.91808 0.92157 0.95662 0.91255 0.90953 0.90626 0.91046 0.95583 0.90004 0.89358 0.91271 0.89923 0.89330 0.89287 0.91788 0.91828 0.93524 0.93516 0.96582 0.96606 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.26 37.16 0.31 -1.38 16 2 C 0.14 1.52 2.86 -66.95 -0.19 1.33 16 3 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.07 0.55 2.53 -65.88 -0.17 0.39 16 5 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 6 N -0.53 -3.82 3.79 -240.96 -0.91 -4.74 16 7 C 0.02 0.13 9.22 60.06 0.55 0.68 16 8 C 0.02 0.11 8.73 60.06 0.52 0.63 16 9 C -0.13 -0.83 5.08 -24.58 -0.12 -0.95 16 10 C 0.10 0.80 6.69 -2.53 -0.02 0.78 16 11 N -0.62 -7.27 3.08 -163.02 -0.50 -7.77 16 12 C 0.53 8.02 7.63 -10.99 -0.08 7.93 16 13 O -0.53 -10.14 14.80 5.55 0.08 -10.06 16 14 C -0.13 -1.89 4.71 -27.88 -0.13 -2.02 16 15 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 16 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 17 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 18 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 19 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 22 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H 0.07 0.66 5.39 -51.93 -0.28 0.38 16 27 H 0.06 0.92 6.58 -51.93 -0.34 0.58 16 28 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.36 6.77 -51.93 -0.35 0.01 16 32 H 0.08 0.53 5.79 -51.93 -0.30 0.23 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 36 H 0.09 0.64 7.92 -51.93 -0.41 0.22 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.60 7.48 -51.93 -0.39 0.21 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.11 7.85 -51.93 -0.41 0.70 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -33.85 364.62 -9.04 -42.89 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -8.78 Total: -5.14 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.14 Total: -10.67 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: -0.68 Total: -39.61 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.85 -9.04 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597700147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.280 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds