Wall clock time and date at job start Tue Mar 31 2020 05:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47374 * 2 1 4 4 N 1.46495 * 109.47690 * 179.97438 * 3 2 1 5 5 C 1.34770 * 120.00653 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99653 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00184 * 180.02562 * 5 4 3 8 8 N 1.46901 * 109.47036 * 173.55486 * 7 5 4 9 9 C 1.46901 * 111.00263 * 289.84377 * 8 7 5 10 10 C 1.52997 * 109.46933 * 301.91540 * 9 8 7 11 11 C 1.53002 * 109.46753 * 185.47863 * 10 9 8 12 12 C 1.46899 * 111.00058 * 165.88924 * 8 7 5 13 13 C 1.53004 * 109.47256 * 200.81339 * 12 8 7 14 14 C 1.50696 * 115.54963 * 54.60169 * 13 12 8 15 15 H 1.07996 * 120.00101 * 215.63233 * 14 13 12 16 16 C 1.37878 * 120.00212 * 35.36075 * 14 13 12 17 17 N 1.31519 * 119.99674 * 8.28271 * 16 14 13 18 18 Si 1.86792 * 120.00429 * 188.27852 * 16 14 13 19 19 H 1.48502 * 109.47063 * 64.99382 * 18 16 14 20 20 H 1.48500 * 109.47495 * 184.99580 * 18 16 14 21 21 H 1.48498 * 109.47233 * 305.00103 * 18 16 14 22 22 C 1.53005 * 117.49589 * 200.27267 * 13 12 8 23 23 C 1.52999 * 117.49553 * 268.92807 * 13 12 8 24 24 H 1.08996 * 109.47193 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47131 * 300.00274 * 1 2 3 26 26 H 1.09006 * 109.46992 * 59.99659 * 1 2 3 27 27 H 1.09005 * 109.46646 * 240.00027 * 2 1 3 28 28 H 1.08999 * 109.46627 * 120.00361 * 2 1 3 29 29 H 1.09005 * 109.47135 * 59.99823 * 3 2 1 30 30 H 1.09001 * 109.47529 * 300.00578 * 3 2 1 31 31 H 0.97008 * 119.99608 * 0.02562 * 4 3 2 32 32 H 1.09000 * 109.47139 * 53.55513 * 7 5 4 33 33 H 1.08998 * 109.47339 * 293.55430 * 7 5 4 34 34 H 1.09005 * 109.46623 * 61.91513 * 9 8 7 35 35 H 1.08995 * 109.47301 * 181.91112 * 9 8 7 36 36 H 1.09002 * 109.47211 * 305.47630 * 10 9 8 37 37 H 1.08995 * 109.47496 * 65.47801 * 10 9 8 38 38 H 1.09003 * 109.46714 * 304.80141 * 11 10 9 39 39 H 1.08997 * 109.47517 * 64.80855 * 11 10 9 40 40 H 1.09000 * 109.47155 * 184.80905 * 11 10 9 41 41 H 1.09004 * 109.46881 * 80.81211 * 12 8 7 42 42 H 1.09006 * 109.47416 * 320.81440 * 12 8 7 43 43 H 0.96994 * 119.99920 * 174.97694 * 17 16 14 44 44 H 1.09007 * 117.49518 * 215.00289 * 22 13 12 45 45 H 1.08994 * 117.50019 * 0.02562 * 22 13 12 46 46 H 1.08995 * 117.50412 * 359.97438 * 23 13 12 47 47 H 1.09007 * 117.49226 * 144.97516 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6096 0.0002 6 8 3.5725 3.6599 -0.0002 7 6 5.6859 2.6096 0.0003 8 7 6.1756 3.9858 -0.1557 9 6 5.9123 4.4879 -1.5109 10 6 6.5819 3.5688 -2.5344 11 6 6.4242 4.1645 -3.9348 12 6 7.6051 4.0761 0.1706 13 6 7.9613 5.5260 0.5048 14 6 7.1330 6.1654 1.5892 15 1 6.8762 7.2125 1.5261 16 6 6.6982 5.4123 2.6592 17 7 7.1378 4.1833 2.8201 18 14 5.4848 6.1376 3.8802 19 1 4.1922 6.3992 3.1976 20 1 5.2711 5.1794 4.9944 21 1 6.0263 7.4109 4.4193 22 6 9.4333 5.9321 0.4079 23 6 8.4336 6.4200 -0.6435 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9901 0.6024 0.0006 32 1 6.0493 1.9988 -0.8262 33 1 6.0492 2.1993 0.9424 34 1 4.8370 4.5072 -1.6885 35 1 6.3149 5.4959 -1.6095 36 1 7.6416 3.4724 -2.2977 37 1 6.1117 2.5859 -2.5026 38 1 5.3678 4.3402 -4.1380 39 1 6.9670 5.1080 -3.9915 40 1 6.8254 3.4696 -4.6725 41 1 8.1945 3.7449 -0.6844 42 1 7.8225 3.4412 1.0296 43 1 6.8897 3.6791 3.6107 44 1 9.8026 6.6618 1.1286 45 1 10.1478 5.1664 0.1057 46 1 8.4909 5.9752 -1.6369 47 1 8.1447 7.4707 -0.6147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602767864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:01 Heat of formation + Delta-G solvation = -11.349005 kcal Electronic energy + Delta-G solvation = -23780.832689 eV Core-core repulsion = 20578.506444 eV Total energy + Delta-G solvation = -3202.326245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.40227 -37.63153 -35.70449 -35.07397 -32.53328 -32.20262 -31.75946 -28.05945 -26.17707 -25.59674 -25.11635 -22.73147 -21.72681 -21.09430 -20.76494 -19.47861 -18.55148 -16.51333 -15.91722 -15.88234 -15.68112 -14.97513 -14.87293 -14.36038 -13.90322 -13.68026 -13.61812 -13.34731 -13.09893 -12.74028 -12.69083 -12.38459 -12.15116 -11.54549 -11.39301 -11.29031 -11.23635 -11.18180 -11.00198 -10.91115 -10.75320 -10.74513 -10.39773 -10.33231 -10.03376 -9.77922 -9.44245 -9.01082 -8.82501 -8.74887 -8.50362 -7.87285 -6.99570 -5.79286 -3.79993 3.25716 3.46286 3.47417 3.49737 3.60130 4.60079 4.73980 4.82378 4.87271 5.08077 5.28437 5.33920 5.38342 5.41213 5.49888 5.50567 5.66740 5.68574 5.77076 5.80827 5.86315 6.00321 6.07482 6.08907 6.12525 6.14687 6.20597 6.29863 6.39307 6.48707 6.59592 6.71209 6.74608 6.77567 6.82802 7.02670 7.05080 7.27153 7.43394 7.65794 7.81492 8.12408 8.24837 8.32754 8.67694 8.81841 9.12744 9.80392 11.22864 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.006190 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.525900 B = 4522.355325 C = 6052.005794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.121 3.879 4 N -0.746 5.746 5 C 0.512 3.488 6 O -0.512 6.512 7 C 0.041 3.959 8 N -0.475 5.475 9 C 0.054 3.946 10 C -0.168 4.168 11 C -0.142 4.142 12 C 0.099 3.901 13 C 0.073 3.927 14 C -0.465 4.465 15 H 0.052 0.948 16 C 0.091 3.909 17 N -0.885 5.885 18 Si 0.889 3.111 19 H -0.275 1.275 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.208 4.208 23 C -0.217 4.217 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.395 0.605 32 H 0.046 0.954 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.044 0.956 41 H -0.005 1.005 42 H 0.115 0.885 43 H 0.254 0.746 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 -10.651 -8.137 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.003 4.003 4 N -0.401 5.401 5 C 0.299 3.701 6 O -0.385 6.385 7 C -0.091 4.091 8 N -0.196 5.196 9 C -0.075 4.075 10 C -0.207 4.207 11 C -0.200 4.200 12 C -0.027 4.027 13 C 0.072 3.928 14 C -0.502 4.502 15 H 0.070 0.930 16 C -0.111 4.111 17 N -0.524 5.524 18 Si 0.717 3.283 19 H -0.200 1.200 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.247 4.247 23 C -0.255 4.255 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.013 0.987 42 H 0.133 0.867 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.880 -9.715 -7.675 14.164 hybrid contribution 0.061 -0.564 0.055 0.570 sum -6.819 -10.279 -7.620 14.499 Atomic orbital electron populations 1.21679 0.94860 1.01835 1.02324 1.21727 0.96722 0.96306 1.02506 1.21268 0.80545 0.96427 1.02085 1.46097 1.06708 1.08974 1.78341 1.21010 0.90699 0.83096 0.75340 1.90683 1.70069 1.31047 1.46726 1.21959 0.90922 0.93635 1.02582 1.61477 1.18629 1.16163 1.23305 1.22335 1.00155 0.98790 0.86200 1.22278 1.01836 1.00146 0.96455 1.21642 1.01313 1.00617 0.96476 1.21881 0.83939 0.98767 0.98136 1.18882 0.90280 0.90827 0.92839 1.20267 1.30564 0.94927 1.04461 0.93016 1.24653 0.94776 0.94307 0.97326 1.69733 1.45319 1.10180 1.27122 0.86725 0.82903 0.78384 0.80238 1.20044 1.21768 1.20830 1.22973 0.95817 1.03512 1.02395 1.22931 1.08810 1.00068 0.93676 0.92419 0.92357 0.92452 0.91528 0.91387 0.91886 0.92024 0.77182 0.93649 0.87630 0.91316 0.90124 0.91770 0.92985 0.93085 0.92755 0.93659 0.98721 0.86685 0.93547 0.90581 0.92129 0.91852 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.18 6.05 -26.73 -0.16 -1.34 16 3 C 0.12 1.51 5.67 -4.05 -0.02 1.48 16 4 N -0.75 -10.28 5.56 -60.30 -0.33 -10.62 16 5 C 0.51 9.52 7.46 -10.99 -0.08 9.44 16 6 O -0.51 -11.83 14.98 5.56 0.08 -11.75 16 7 C 0.04 0.75 5.24 -4.98 -0.03 0.73 16 8 N -0.48 -10.33 3.86 -236.07 -0.91 -11.24 16 9 C 0.05 1.06 4.93 -3.83 -0.02 1.04 16 10 C -0.17 -2.69 5.23 -26.73 -0.14 -2.83 16 11 C -0.14 -1.96 9.91 37.16 0.37 -1.59 16 12 C 0.10 2.26 3.95 -3.82 -0.02 2.25 16 13 C 0.07 1.79 1.73 -155.66 -0.27 1.52 16 14 C -0.47 -12.97 8.74 -34.44 -0.30 -13.27 16 15 H 0.05 1.48 7.83 -52.49 -0.41 1.07 16 16 C 0.09 2.52 5.21 -17.82 -0.09 2.43 16 17 N -0.88 -24.04 10.65 55.43 0.59 -23.45 16 18 Si 0.89 22.52 29.55 -169.99 -5.02 17.49 16 19 H -0.27 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 C -0.21 -4.77 9.96 -26.69 -0.27 -5.03 16 23 C -0.22 -4.81 8.54 -26.69 -0.23 -5.04 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.40 4.20 8.47 -40.82 -0.35 3.85 16 32 H 0.05 0.72 5.87 -51.93 -0.31 0.41 16 33 H 0.11 2.03 7.72 -51.93 -0.40 1.63 16 34 H 0.07 1.43 6.51 -51.93 -0.34 1.09 16 35 H 0.08 1.71 6.11 -51.93 -0.32 1.39 16 36 H 0.06 1.08 6.07 -51.93 -0.32 0.76 16 37 H 0.05 0.78 6.47 -51.93 -0.34 0.45 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H -0.01 -0.11 5.79 -51.93 -0.30 -0.41 16 42 H 0.12 2.85 5.46 -51.93 -0.28 2.57 16 43 H 0.25 6.74 8.32 -40.82 -0.34 6.40 16 44 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.06 1.29 7.90 -51.93 -0.41 0.88 16 47 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -30.78 366.82 -9.35 -40.13 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -8.39 Total: 4.94 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.89 Total: -11.03 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.66 Total: -45.32 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.78 -9.35 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602767864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.785 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds