Wall clock time and date at job start Tue Mar 31 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.48809 * 2 1 4 4 C 1.53045 * 109.48877 * 239.93601 * 2 1 3 5 5 N 1.46950 * 109.36545 * 181.63092 * 4 2 1 6 6 C 1.46896 * 111.00365 * 183.18653 * 5 4 2 7 7 C 1.52998 * 109.47133 * 47.13015 * 6 5 4 8 8 C 1.50694 * 115.55275 * 274.23992 * 7 6 5 9 9 H 1.08002 * 119.99861 * 145.03013 * 8 7 6 10 10 C 1.37875 * 120.00350 * 325.03043 * 8 7 6 11 11 N 1.31506 * 120.00459 * 170.68709 * 10 8 7 12 12 Si 1.86807 * 119.99682 * 350.68587 * 10 8 7 13 13 H 1.48503 * 109.47063 * 96.44924 * 12 10 8 14 14 H 1.48495 * 109.47294 * 216.45188 * 12 10 8 15 15 H 1.48496 * 109.47223 * 336.45208 * 12 10 8 16 16 C 1.53008 * 117.49544 * 128.52711 * 7 6 5 17 17 C 1.53001 * 117.49293 * 59.90988 * 7 6 5 18 18 C 1.46968 * 110.88096 * 59.31567 * 5 4 2 19 19 C 1.53042 * 109.36343 * 300.67983 * 18 5 4 20 20 H 1.09001 * 109.49138 * 298.43526 * 19 18 5 21 21 C 1.52999 * 109.48873 * 178.36401 * 19 18 5 22 22 N 1.46958 * 109.36640 * 58.40312 * 19 18 5 23 23 C 1.46896 * 111.00511 * 176.80803 * 22 19 18 24 24 C 1.53007 * 109.47164 * 62.52974 * 23 22 19 25 25 O 1.42900 * 109.46889 * 70.57944 * 24 23 22 26 26 H 1.09009 * 109.46958 * 304.46571 * 1 2 3 27 27 H 1.08997 * 109.47412 * 64.46425 * 1 2 3 28 28 H 1.08999 * 109.47313 * 184.46960 * 1 2 3 29 29 H 1.08998 * 109.49285 * 61.66173 * 4 2 1 30 30 H 1.09001 * 109.48672 * 301.59387 * 4 2 1 31 31 H 1.09003 * 109.47442 * 167.13770 * 6 5 4 32 32 H 1.09001 * 109.46911 * 287.13515 * 6 5 4 33 33 H 0.97000 * 120.00344 * 180.02562 * 11 10 8 34 34 H 1.08996 * 117.49867 * 0.02562 * 16 7 6 35 35 H 1.09000 * 117.49299 * 145.02817 * 16 7 6 36 36 H 1.09001 * 117.49733 * 214.97862 * 17 7 6 37 37 H 1.08995 * 117.50305 * 359.97438 * 17 7 6 38 38 H 1.09000 * 109.48536 * 60.65065 * 18 5 4 39 39 H 1.08998 * 109.48671 * 180.69096 * 18 5 4 40 40 H 1.09011 * 109.46808 * 60.00394 * 21 19 18 41 41 H 1.08998 * 109.47347 * 179.97438 * 21 19 18 42 42 H 1.08993 * 109.47360 * 300.00660 * 21 19 18 43 43 H 1.08998 * 109.47720 * 182.52690 * 23 22 19 44 44 H 1.08998 * 109.47239 * 302.53393 * 23 22 19 45 45 H 1.08995 * 109.47225 * 190.58592 * 24 23 22 46 46 H 1.09000 * 109.46850 * 310.58469 * 24 23 22 47 47 H 0.96703 * 114.00142 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7228 -1.2487 5 7 3.5096 -0.7554 -1.2263 6 6 4.0411 -1.3756 -2.4473 7 6 3.3393 -0.7794 -3.6692 8 6 2.0357 -1.4311 -4.0523 9 1 1.2318 -0.8339 -4.4567 10 6 1.8691 -2.7896 -3.8866 11 7 0.6811 -3.3307 -4.0452 12 14 3.3313 -3.8618 -3.4368 13 1 3.3553 -4.0749 -1.9673 14 1 3.2145 -5.1724 -4.1251 15 1 4.5863 -3.1904 -3.8601 16 6 4.2212 -0.2443 -4.7992 17 6 3.4671 0.7290 -3.8910 18 6 3.9999 -1.4490 -0.0270 19 6 3.4894 -0.7261 1.2216 20 1 3.8756 0.2931 1.2352 21 6 3.9644 -1.4693 2.4718 22 7 2.0203 -0.6935 1.1993 23 6 1.4888 -0.0734 2.4203 24 6 1.9585 1.3807 2.4999 25 8 1.2902 2.1524 1.4999 26 1 -0.3633 0.5816 0.8474 27 1 -0.3634 0.4430 -0.9272 28 1 -0.3634 -1.0245 0.0801 29 1 1.7022 -0.1934 -2.1393 30 1 1.6544 -1.7420 -1.2623 31 1 5.1123 -1.1855 -2.5148 32 1 3.8642 -2.4506 -2.4154 33 1 0.5639 -4.2865 -3.9282 34 1 5.3013 -0.3175 -4.6723 35 1 3.8585 -0.3638 -5.8201 36 1 2.6084 1.2500 -4.3145 37 1 4.0508 1.2967 -3.1664 38 1 3.6360 -2.4765 -0.0268 39 1 5.0899 -1.4493 -0.0272 40 1 5.0541 -1.4950 2.4871 41 1 3.6010 -0.9540 3.3609 42 1 3.5771 -2.4880 2.4580 43 1 0.3995 -0.1025 2.3982 44 1 1.8493 -0.6197 3.2919 45 1 1.7265 1.7840 3.4855 46 1 3.0348 1.4244 2.3335 47 1 1.5402 3.0865 1.4917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602838371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:34 Heat of formation + Delta-G solvation = 13.878431 kcal Electronic energy + Delta-G solvation = -25067.982636 eV Core-core repulsion = 21866.750334 eV Total energy + Delta-G solvation = -3201.232301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.79686 -37.69511 -36.22363 -34.13256 -33.10608 -32.17286 -30.11400 -27.52742 -26.92623 -26.12976 -25.31294 -23.23881 -21.39547 -20.97833 -20.76205 -18.92919 -18.75482 -17.55166 -16.44919 -15.84852 -15.80110 -15.49696 -14.75615 -14.37390 -14.00787 -13.71753 -13.34945 -13.22829 -12.95437 -12.77706 -12.48559 -12.26075 -12.07364 -11.99479 -11.75622 -11.39597 -11.19560 -11.07457 -11.06494 -10.84751 -10.58561 -10.49085 -10.35112 -10.13324 -10.04686 -9.65082 -9.51799 -9.32983 -9.10041 -8.75198 -8.31457 -7.84398 -7.36318 -6.13227 -4.04795 3.23993 3.37937 3.40052 4.08960 4.36536 4.37151 4.49908 4.96552 5.00533 5.11462 5.21671 5.29647 5.36487 5.46772 5.51144 5.55351 5.74907 5.77990 5.85122 5.88277 5.95987 6.02467 6.04687 6.12034 6.18892 6.21904 6.27125 6.39334 6.43283 6.49642 6.59027 6.62929 6.68111 6.82266 6.85045 6.94168 7.05779 7.23670 7.29553 7.47854 7.56854 7.60260 7.74862 7.90320 7.94333 8.51641 8.90532 9.50645 10.98295 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018673 B = 0.006699 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.120945 B = 4179.012649 C = 4331.598225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.083 3.917 3 H 0.071 0.929 4 C 0.068 3.932 5 N -0.530 5.530 6 C 0.090 3.910 7 C 0.008 3.992 8 C -0.479 4.479 9 H 0.078 0.922 10 C 0.076 3.924 11 N -0.888 5.888 12 Si 0.897 3.103 13 H -0.287 1.287 14 H -0.304 1.304 15 H -0.267 1.267 16 C -0.209 4.209 17 C -0.174 4.174 18 C 0.056 3.944 19 C 0.084 3.916 20 H 0.047 0.953 21 C -0.146 4.146 22 N -0.528 5.528 23 C 0.048 3.952 24 C 0.038 3.962 25 O -0.555 6.555 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.109 0.891 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.040 0.960 46 H 0.046 0.954 47 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 7.676 13.816 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.025 4.025 3 H 0.088 0.912 4 C -0.059 4.059 5 N -0.254 5.254 6 C -0.037 4.037 7 C 0.007 3.993 8 C -0.516 4.516 9 H 0.096 0.904 10 C -0.127 4.127 11 N -0.524 5.524 12 Si 0.730 3.270 13 H -0.216 1.216 14 H -0.233 1.233 15 H -0.192 1.192 16 C -0.248 4.248 17 C -0.211 4.211 18 C -0.072 4.072 19 C -0.025 4.025 20 H 0.065 0.935 21 C -0.204 4.204 22 N -0.253 5.253 23 C -0.080 4.080 24 C -0.042 4.042 25 O -0.360 6.360 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.430 6.900 13.659 15.931 hybrid contribution 1.147 -0.229 0.445 1.251 sum 5.577 6.670 14.104 16.569 Atomic orbital electron populations 1.21709 0.94651 1.01297 1.01430 1.21947 0.95033 0.97067 0.88432 0.91151 1.22417 0.85652 1.00502 0.97339 1.62244 1.10270 1.52022 1.00862 1.22072 0.97077 0.94922 0.89604 1.19312 0.95878 0.92772 0.91343 1.20347 0.96317 0.92715 1.42191 0.90365 1.24972 0.95209 0.97901 0.94590 1.69891 1.21515 1.12111 1.48917 0.86729 0.84239 0.78861 0.77134 1.21581 1.23278 1.19247 1.23154 0.96179 1.08182 0.97242 1.22634 1.02017 0.93788 1.02701 1.22158 0.98752 0.96202 0.90132 1.21598 0.88094 0.98101 0.94659 0.93528 1.21891 1.00558 1.01281 0.96715 1.62390 1.07362 1.53307 1.02200 1.22403 1.01644 0.89848 0.94115 1.22964 0.96372 0.94229 0.90598 1.86734 1.68958 1.23888 1.56445 0.92598 0.92348 0.92972 0.87279 0.94118 0.92619 0.96110 0.92564 0.91666 0.89905 0.90425 0.90542 0.94555 0.91507 0.92423 0.92684 0.91848 0.89715 0.89731 0.94183 0.93579 0.78499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.40 37.16 0.31 -1.98 16 2 C 0.08 1.48 1.92 -67.66 -0.13 1.35 16 3 H 0.07 1.28 5.64 -51.93 -0.29 0.98 16 4 C 0.07 1.47 3.72 -3.77 -0.01 1.46 16 5 N -0.53 -10.84 4.73 -234.48 -1.11 -11.95 16 6 C 0.09 2.01 3.94 -3.83 -0.02 1.99 16 7 C 0.01 0.19 0.59 -155.66 -0.09 0.10 16 8 C -0.48 -13.07 7.27 -34.44 -0.25 -13.32 16 9 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 10 C 0.08 2.16 5.15 -17.82 -0.09 2.06 16 11 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 12 Si 0.90 22.74 24.34 -169.99 -4.14 18.61 16 13 H -0.29 -7.27 6.99 56.52 0.39 -6.87 16 14 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 15 H -0.27 -6.51 6.33 56.52 0.36 -6.15 16 16 C -0.21 -4.49 9.88 -26.73 -0.26 -4.76 16 17 C -0.17 -3.64 9.36 -26.73 -0.25 -3.89 16 18 C 0.06 1.02 4.87 -3.77 -0.02 1.00 16 19 C 0.08 1.27 2.16 -67.66 -0.15 1.12 16 20 H 0.05 0.71 6.32 -51.93 -0.33 0.38 16 21 C -0.15 -1.75 8.86 37.16 0.33 -1.42 16 22 N -0.53 -8.43 4.55 -218.57 -0.99 -9.42 16 23 C 0.05 0.61 5.15 -3.82 -0.02 0.59 16 24 C 0.04 0.41 6.83 37.16 0.25 0.67 16 25 O -0.56 -6.62 9.35 -35.23 -0.33 -6.95 16 26 H 0.06 0.87 5.58 -51.92 -0.29 0.58 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.11 2.60 5.27 -51.93 -0.27 2.32 16 30 H 0.04 1.03 7.85 -51.93 -0.41 0.62 16 31 H 0.06 1.17 7.90 -51.93 -0.41 0.76 16 32 H 0.02 0.52 1.63 -51.93 -0.08 0.44 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.06 1.29 8.05 -51.93 -0.42 0.87 16 35 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.05 0.56 6.31 -51.93 -0.33 0.23 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.12 6.28 -51.93 -0.33 0.79 16 44 H 0.08 0.92 6.11 -51.93 -0.32 0.61 16 45 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.05 0.52 6.05 -51.93 -0.31 0.20 16 47 H 0.37 2.91 9.12 45.56 0.42 3.33 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -30.05 335.34 -8.35 -38.39 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.21 Total: 7.11 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.40 Total: -15.03 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -1.33 Total: -47.19 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.33 Total: -6.95 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.05 -8.35 -38.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602838371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.273 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds