Wall clock time and date at job start Tue Mar 31 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.62945 * 2 1 4 4 C 1.53244 * 109.62567 * 239.41592 * 2 1 3 5 5 N 1.46899 * 109.33713 * 186.45891 * 4 2 1 6 6 C 1.46894 * 110.99945 * 187.25396 * 5 4 2 7 7 H 1.08998 * 110.80778 * 303.63342 * 6 5 4 8 8 C 1.55001 * 110.90797 * 67.29646 * 6 5 4 9 9 O 1.44375 * 103.49055 * 155.22322 * 8 6 5 10 10 C 1.43749 * 106.97686 * 319.93781 * 9 8 6 11 11 C 1.52996 * 109.87746 * 267.09229 * 10 9 8 12 12 C 1.52997 * 110.00264 * 146.01112 * 10 9 8 13 13 C 1.54104 * 107.29216 * 26.51523 * 10 9 8 14 14 C 1.46903 * 111.26689 * 63.10622 * 5 4 2 15 15 C 1.53234 * 109.34217 * 296.89332 * 14 5 4 16 16 H 1.09005 * 109.63008 * 294.12363 * 15 14 5 17 17 C 1.52995 * 109.79043 * 173.63726 * 15 14 5 18 18 N 1.47079 * 109.62701 * 120.38673 * 2 1 3 19 19 C 1.36936 * 120.88347 * 350.91703 * 18 2 1 20 20 H 1.08007 * 119.99608 * 126.47747 * 19 18 2 21 21 C 1.38806 * 119.99885 * 306.47891 * 19 18 2 22 22 N 1.31618 * 120.00093 * 337.98364 * 21 19 18 23 23 Si 1.86805 * 119.99817 * 157.98534 * 21 19 18 24 24 H 1.48492 * 109.47358 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47301 * 120.00042 * 23 21 19 26 26 H 1.48502 * 109.46842 * 239.99486 * 23 21 19 27 27 H 1.08999 * 109.46625 * 307.47210 * 1 2 3 28 28 H 1.08992 * 109.47196 * 67.47319 * 1 2 3 29 29 H 1.09003 * 109.47406 * 187.47607 * 1 2 3 30 30 H 1.09001 * 109.49169 * 306.42011 * 4 2 1 31 31 H 1.09001 * 109.48894 * 66.50021 * 4 2 1 32 32 H 1.09000 * 110.61424 * 273.72532 * 8 6 5 33 33 H 1.08998 * 110.61574 * 36.71608 * 8 6 5 34 34 H 1.09001 * 109.46857 * 177.82770 * 11 10 9 35 35 H 1.08994 * 109.47577 * 297.82706 * 11 10 9 36 36 H 1.09002 * 109.47507 * 57.83501 * 11 10 9 37 37 H 1.09006 * 109.47147 * 302.09456 * 12 10 9 38 38 H 1.08997 * 109.47482 * 62.09694 * 12 10 9 39 39 H 1.09005 * 109.47219 * 182.09658 * 12 10 9 40 40 H 1.08994 * 110.48524 * 239.29355 * 13 10 9 41 41 H 1.08998 * 110.59701 * 116.69753 * 13 10 9 42 42 H 1.09004 * 109.49264 * 176.93154 * 14 5 4 43 43 H 1.09001 * 109.49402 * 56.85683 * 14 5 4 44 44 H 1.09000 * 109.47225 * 300.48417 * 17 15 14 45 45 H 1.09004 * 109.47367 * 60.48308 * 17 15 14 46 46 H 1.08998 * 109.47309 * 180.49169 * 17 15 14 47 47 H 0.96999 * 119.99892 * 185.04905 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0448 -0.7344 -1.2426 5 7 3.5054 -0.8664 -1.1595 6 6 4.0568 -1.4103 -2.4077 7 1 3.5939 -2.3666 -2.6511 8 6 3.8889 -0.4014 -3.5724 9 8 4.9408 -0.7688 -4.4904 10 6 6.0984 -1.0832 -3.6983 11 6 6.9746 0.1611 -3.5408 12 6 6.9002 -2.2029 -4.3647 13 6 5.5961 -1.5485 -2.3177 14 6 3.9016 -1.6871 -0.0073 15 6 3.4629 -0.9919 1.2859 16 1 4.0177 -0.0615 1.4077 17 6 3.7274 -1.9083 2.4821 18 7 2.0241 -0.7007 1.1950 19 6 1.1671 -1.0728 2.1962 20 1 1.1432 -2.0987 2.5330 21 6 0.3293 -0.1314 2.7781 22 7 0.6283 1.1484 2.7080 23 14 -1.2225 -0.6810 3.6609 24 1 -1.3298 -2.1608 3.5985 25 1 -1.1646 -0.2478 5.0801 26 1 -2.4072 -0.0712 3.0053 27 1 -0.3632 0.6252 0.8156 28 1 -0.3633 0.3937 -0.9492 29 1 -0.3634 -1.0189 0.1337 30 1 1.5923 -1.7248 -1.2932 31 1 1.7810 -0.1675 -2.1354 32 1 2.9120 -0.5166 -4.0420 33 1 4.0276 0.6201 -3.2183 34 1 7.8299 -0.0746 -2.9075 35 1 7.3261 0.4843 -4.5206 36 1 6.3921 0.9600 -3.0819 37 1 6.2649 -3.0798 -4.4899 38 1 7.2521 -1.8670 -5.3400 39 1 7.7549 -2.4599 -3.7388 40 1 5.9916 -0.9057 -1.5314 41 1 5.8760 -2.5864 -2.1376 42 1 4.9845 -1.8113 -0.0043 43 1 3.4233 -2.6643 -0.0752 44 1 3.1715 -2.8376 2.3578 45 1 4.7933 -2.1279 2.5430 46 1 3.4056 -1.4124 3.3979 47 1 0.0834 1.8002 3.1762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602849544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:28 Heat of formation + Delta-G solvation = -19.255440 kcal Electronic energy + Delta-G solvation = -24362.580478 eV Core-core repulsion = 21159.911384 eV Total energy + Delta-G solvation = -3202.669094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.06339 -38.05322 -34.85109 -33.17724 -32.69414 -31.62075 -29.58785 -27.47053 -27.44176 -26.65164 -25.00840 -24.90455 -22.72318 -20.46559 -20.10718 -19.75059 -19.08147 -16.67067 -15.94170 -15.88260 -15.02694 -14.96176 -14.49505 -14.29204 -14.13660 -13.74252 -13.52434 -13.24348 -12.83452 -12.76088 -12.51978 -12.23119 -11.99240 -11.82328 -11.68760 -11.57758 -11.43984 -11.22893 -10.97351 -10.83359 -10.71649 -10.64147 -10.55788 -10.42970 -10.30561 -10.07844 -9.81130 -9.73724 -9.57896 -9.37726 -8.17428 -7.85091 -6.28492 -5.73297 -3.48327 3.30336 3.40784 3.43583 3.79875 4.33742 4.44191 4.60720 4.76782 4.87039 5.09580 5.23568 5.28220 5.32557 5.35705 5.51357 5.60924 5.64222 5.79333 5.81036 5.84176 5.84962 5.89867 5.96815 6.07423 6.09387 6.15251 6.20332 6.25005 6.27131 6.35683 6.45297 6.49581 6.61257 6.71185 6.81591 6.93919 7.00454 7.18895 7.22815 7.52939 7.54522 7.67407 7.73950 7.91271 8.65636 9.23934 9.77544 10.57989 11.19701 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032407 B = 0.004500 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.808658 B = 6221.194376 C = 6618.023177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.199 3.801 3 H 0.035 0.965 4 C 0.042 3.958 5 N -0.521 5.521 6 C 0.050 3.950 7 H 0.048 0.952 8 C 0.058 3.942 9 O -0.373 6.373 10 C 0.099 3.901 11 C -0.161 4.161 12 C -0.142 4.142 13 C -0.139 4.139 14 C 0.048 3.952 15 C 0.172 3.828 16 H 0.031 0.969 17 C -0.129 4.129 18 N -0.578 5.578 19 C -0.267 4.267 20 H 0.050 0.950 21 C 0.041 3.959 22 N -0.874 5.874 23 Si 0.880 3.120 24 H -0.274 1.274 25 H -0.288 1.288 26 H -0.285 1.285 27 H 0.084 0.916 28 H 0.023 0.977 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.066 0.934 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.464 -4.328 -10.513 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.092 3.908 3 H 0.053 0.947 4 C -0.087 4.087 5 N -0.246 5.246 6 C -0.059 4.059 7 H 0.066 0.934 8 C -0.019 4.019 9 O -0.292 6.292 10 C 0.059 3.941 11 C -0.219 4.219 12 C -0.199 4.199 13 C -0.177 4.177 14 C -0.081 4.081 15 C 0.066 3.934 16 H 0.048 0.952 17 C -0.187 4.187 18 N -0.303 5.303 19 C -0.397 4.397 20 H 0.068 0.932 21 C -0.162 4.162 22 N -0.513 5.513 23 Si 0.708 3.292 24 H -0.198 1.198 25 H -0.215 1.215 26 H -0.211 1.211 27 H 0.102 0.898 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.539 -3.703 -10.656 14.773 hybrid contribution -1.240 -0.956 0.589 1.673 sum 8.299 -4.659 -10.067 13.854 Atomic orbital electron populations 1.21922 0.95866 1.02033 0.99980 1.20287 0.92646 0.93895 0.83933 0.94675 1.22878 0.85968 0.99402 1.00436 1.61999 1.11789 1.49852 1.00999 1.23150 0.94588 0.96470 0.91739 0.93386 1.23517 0.90982 0.98419 0.88979 1.88861 1.21376 1.88158 1.30769 1.22052 0.87134 0.94572 0.90333 1.22232 0.99698 0.97909 1.02016 1.21896 0.99486 0.97608 1.00926 1.23084 0.95213 1.02147 0.97237 1.22726 0.98635 0.94589 0.92152 1.20531 0.87516 0.94991 0.90350 0.95167 1.21680 0.97849 0.99612 0.99537 1.44020 1.00595 1.68372 1.17311 1.18620 1.15259 0.92067 1.13784 0.93232 1.25548 0.99529 0.95369 0.95740 1.70087 1.37942 1.00765 1.42527 0.86629 0.84438 0.78908 0.79229 1.19830 1.21468 1.21109 0.89771 0.95806 0.93371 0.95487 0.92315 0.89467 0.91021 0.91756 0.92267 0.91853 0.92095 0.92127 0.91427 0.89278 0.90938 0.92038 0.95607 0.93382 0.94739 0.91537 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 7.98 37.16 0.30 -2.84 16 2 C 0.20 4.52 3.21 -67.49 -0.22 4.30 16 3 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.04 0.80 4.81 -3.70 -0.02 0.79 16 5 N -0.52 -9.15 4.48 -223.94 -1.00 -10.15 16 6 C 0.05 0.74 2.81 -65.70 -0.18 0.55 16 7 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 8 C 0.06 0.82 6.33 38.21 0.24 1.06 16 9 O -0.37 -5.29 10.86 -35.23 -0.38 -5.67 16 10 C 0.10 1.18 1.19 -90.05 -0.11 1.08 16 11 C -0.16 -1.76 8.61 37.16 0.32 -1.44 16 12 C -0.14 -1.41 8.68 37.16 0.32 -1.09 16 13 C -0.14 -1.77 4.68 -25.20 -0.12 -1.89 16 14 C 0.05 0.87 4.68 -3.70 -0.02 0.85 16 15 C 0.17 3.68 3.65 -67.49 -0.25 3.44 16 16 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 17 C -0.13 -2.52 8.20 37.16 0.30 -2.21 16 18 N -0.58 -14.01 2.81 -157.00 -0.44 -14.45 16 19 C -0.27 -6.99 6.70 -15.06 -0.10 -7.09 16 20 H 0.05 1.33 7.21 -52.48 -0.38 0.95 16 21 C 0.04 1.08 3.21 -17.43 -0.06 1.03 16 22 N -0.87 -24.44 12.12 55.49 0.67 -23.77 16 23 Si 0.88 20.71 29.61 -169.99 -5.03 15.67 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 H 0.08 2.12 5.15 -51.93 -0.27 1.85 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 1.09 7.69 -51.93 -0.40 0.69 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.01 7.03 -51.93 -0.37 0.64 16 32 H 0.09 1.16 7.88 -51.93 -0.41 0.75 16 33 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.19 6.91 -51.93 -0.36 0.83 16 41 H 0.07 0.85 7.70 -51.93 -0.40 0.45 16 42 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.94 7.60 -51.93 -0.39 0.55 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.44 7.67 -51.93 -0.40 1.04 16 47 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -27.87 349.42 -9.26 -37.12 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.75 Total: -0.55 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 0.42 Total: -3.47 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.77 Total: -48.37 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.38 Total: -5.67 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.87 -9.26 -37.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602849544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.867 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds