Wall clock time and date at job start Tue Mar 31 2020 06:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.62142 * 2 1 4 4 C 1.53239 * 109.79139 * 239.51357 * 2 1 3 5 5 N 1.46900 * 109.33754 * 186.36631 * 4 2 1 6 6 C 1.46904 * 110.99772 * 187.25391 * 5 4 2 7 7 H 1.08999 * 110.80009 * 189.32447 * 6 5 4 8 8 C 1.54997 * 110.90475 * 312.98957 * 6 5 4 9 9 O 1.44382 * 103.48907 * 155.22469 * 8 6 5 10 10 C 1.43746 * 106.97081 * 319.93824 * 9 8 6 11 11 C 1.52995 * 109.87887 * 267.08789 * 10 9 8 12 12 C 1.53008 * 109.99893 * 146.00906 * 10 9 8 13 13 C 1.54094 * 107.29670 * 26.51700 * 10 9 8 14 14 C 1.46905 * 111.27039 * 63.10272 * 5 4 2 15 15 C 1.53236 * 109.33759 * 296.89575 * 14 5 4 16 16 H 1.09003 * 109.62890 * 173.54322 * 15 14 5 17 17 C 1.53004 * 109.78928 * 294.02598 * 15 14 5 18 18 N 1.47071 * 108.52493 * 53.83140 * 15 14 5 19 19 C 1.36933 * 120.88534 * 128.83494 * 18 15 14 20 20 H 1.07995 * 120.00554 * 206.21523 * 19 18 15 21 21 C 1.38820 * 119.99624 * 26.21319 * 19 18 15 22 22 N 1.31620 * 120.00003 * 17.43906 * 21 19 18 23 23 Si 1.86796 * 119.99687 * 197.43511 * 21 19 18 24 24 H 1.48507 * 109.47124 * 90.00506 * 23 21 19 25 25 H 1.48504 * 109.47190 * 210.00159 * 23 21 19 26 26 H 1.48496 * 109.47625 * 330.00307 * 23 21 19 27 27 H 1.08996 * 109.47623 * 300.00092 * 1 2 3 28 28 H 1.09000 * 109.47119 * 60.00367 * 1 2 3 29 29 H 1.09006 * 109.47087 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.49011 * 306.31823 * 4 2 1 31 31 H 1.08991 * 109.49369 * 66.40623 * 4 2 1 32 32 H 1.09001 * 110.62142 * 273.72536 * 8 6 5 33 33 H 1.08999 * 110.62057 * 36.72131 * 8 6 5 34 34 H 1.08994 * 109.47082 * 177.83899 * 11 10 9 35 35 H 1.09010 * 109.47045 * 297.83574 * 11 10 9 36 36 H 1.08999 * 109.47241 * 57.83655 * 11 10 9 37 37 H 1.08991 * 109.46944 * 302.09430 * 12 10 9 38 38 H 1.08995 * 109.46814 * 62.09276 * 12 10 9 39 39 H 1.09001 * 109.46958 * 182.09222 * 12 10 9 40 40 H 1.09005 * 110.48836 * 239.29189 * 13 10 9 41 41 H 1.08998 * 110.60302 * 116.69760 * 13 10 9 42 42 H 1.09000 * 109.48802 * 176.93395 * 14 5 4 43 43 H 1.08995 * 109.51391 * 56.86945 * 14 5 4 44 44 H 1.08999 * 109.47279 * 179.13305 * 17 15 14 45 45 H 1.09003 * 109.46743 * 299.12796 * 17 15 14 46 46 H 1.08999 * 109.47405 * 59.12814 * 17 15 14 47 47 H 0.96995 * 119.99243 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0488 -0.7315 -1.2425 5 7 3.5097 -0.8595 -1.1570 6 6 4.0647 -1.4005 -2.4050 7 1 5.1193 -1.6480 -2.2843 8 6 3.2568 -2.6349 -2.8802 9 8 3.4955 -2.6660 -4.3038 10 6 3.4621 -1.3048 -4.7647 11 6 2.0501 -0.9491 -5.2342 12 6 4.4550 -1.1168 -5.9136 13 6 3.8605 -0.4088 -3.5760 14 6 3.9063 -1.6805 -0.0051 15 6 3.4635 -0.9878 1.2881 16 1 3.6519 -1.6438 2.1379 17 6 4.2378 0.3197 1.4667 18 7 2.0240 -0.7007 1.1951 19 6 1.1666 -1.0754 2.1948 20 1 0.1255 -1.2580 1.9732 21 6 1.6356 -1.2205 3.4933 22 7 2.7854 -0.6830 3.8417 23 14 0.6346 -2.1785 4.7462 24 1 1.0317 -3.6090 4.7076 25 1 0.8863 -1.6314 6.1037 26 1 -0.8097 -2.0568 4.4235 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.5993 -1.7231 -1.2950 31 1 1.7850 -0.1644 -2.1351 32 1 3.6310 -3.5435 -2.4084 33 1 2.1951 -2.5023 -2.6718 34 1 2.0232 0.0950 -5.5460 35 1 1.7752 -1.5865 -6.0747 36 1 1.3459 -1.1023 -4.4164 37 1 5.4554 -1.3891 -5.5774 38 1 4.1671 -1.7533 -6.7503 39 1 4.4496 -0.0742 -6.2315 40 1 3.0614 0.2955 -3.3446 41 1 4.7869 0.1239 -3.7908 42 1 4.9895 -1.8015 -0.0005 43 1 3.4313 -2.6590 -0.0746 44 1 3.9080 0.8155 2.3796 45 1 5.3041 0.1040 1.5353 46 1 4.0531 0.9710 0.6124 47 1 3.1128 -0.7842 4.7491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602849545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:31 Heat of formation + Delta-G solvation = -12.598936 kcal Electronic energy + Delta-G solvation = -24670.381694 eV Core-core repulsion = 21468.001248 eV Total energy + Delta-G solvation = -3202.380446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.28014 -38.05410 -34.78288 -33.10958 -32.55664 -31.57745 -29.34955 -27.61941 -27.50215 -26.24002 -25.65756 -24.41772 -23.23592 -20.75617 -20.15855 -20.11650 -18.45688 -16.33608 -16.02266 -15.92492 -15.19702 -14.90250 -14.51677 -14.09565 -13.96812 -13.66211 -13.49384 -13.27905 -12.97818 -12.77570 -12.57830 -12.25961 -11.96362 -11.75206 -11.69860 -11.57057 -11.27401 -11.17729 -10.98210 -10.91535 -10.67739 -10.61928 -10.54327 -10.41360 -10.35775 -9.99629 -9.94951 -9.57079 -9.43774 -9.19014 -8.44148 -7.71884 -6.61492 -5.74101 -3.14658 3.38659 3.46365 3.46744 3.77046 4.43436 4.51804 4.63913 4.78263 4.94776 5.07005 5.09774 5.28123 5.34804 5.41905 5.50167 5.57083 5.60931 5.70948 5.78193 5.80398 5.81875 5.88010 6.00204 6.05552 6.09688 6.14156 6.20109 6.23181 6.26685 6.32637 6.36060 6.42700 6.63406 6.86220 6.95799 6.99747 7.04198 7.11969 7.24815 7.52841 7.59980 7.75616 7.86312 7.98201 8.47880 9.26733 9.89201 10.47021 11.33292 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029035 B = 0.004810 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.115204 B = 5819.740814 C = 6059.421967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 H 0.032 0.968 4 C 0.043 3.957 5 N -0.514 5.514 6 C 0.054 3.946 7 H 0.090 0.910 8 C 0.011 3.989 9 O -0.371 6.371 10 C 0.095 3.905 11 C -0.162 4.162 12 C -0.141 4.141 13 C -0.138 4.138 14 C 0.041 3.959 15 C 0.197 3.803 16 H 0.095 0.905 17 C -0.135 4.135 18 N -0.584 5.584 19 C -0.248 4.248 20 H 0.071 0.929 21 C 0.002 3.998 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.281 1.281 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.072 0.928 45 H 0.020 0.980 46 H 0.032 0.968 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 0.165 -15.212 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.065 3.935 3 H 0.050 0.950 4 C -0.086 4.086 5 N -0.238 5.238 6 C -0.056 4.056 7 H 0.108 0.892 8 C -0.067 4.067 9 O -0.290 6.290 10 C 0.055 3.945 11 C -0.220 4.220 12 C -0.198 4.198 13 C -0.176 4.176 14 C -0.088 4.088 15 C 0.091 3.909 16 H 0.113 0.887 17 C -0.194 4.194 18 N -0.307 5.307 19 C -0.378 4.378 20 H 0.088 0.912 21 C -0.196 4.196 22 N -0.543 5.543 23 Si 0.728 3.272 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.207 1.207 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.091 0.909 45 H 0.039 0.961 46 H 0.051 0.949 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.349 0.454 -15.094 15.282 hybrid contribution -0.786 -1.204 0.739 1.616 sum 1.563 -0.749 -14.355 14.459 Atomic orbital electron populations 1.21805 0.96121 1.01271 1.00388 1.20455 0.92187 0.94261 0.86633 0.95001 1.22780 0.87137 0.99185 0.99509 1.62030 1.10940 1.49763 1.01065 1.23296 0.99324 0.92141 0.90822 0.89171 1.24346 1.00707 1.00257 0.81400 1.88855 1.92868 1.25234 1.21999 1.22112 0.95109 0.82657 0.94607 1.22251 0.96411 1.01529 1.01780 1.21880 0.98855 1.01728 0.97335 1.23046 1.03017 0.98300 0.93279 1.22890 0.98710 0.94551 0.92667 1.20408 0.82867 0.95296 0.92357 0.88685 1.21950 0.96570 0.99416 1.01415 1.44281 1.03408 1.65180 1.17870 1.19206 0.92873 1.39113 0.86592 0.91174 1.24976 0.97682 1.00315 0.96667 1.70017 1.21249 1.45082 1.17944 0.86362 0.79717 0.80042 0.81060 1.21706 1.21905 1.20651 0.91767 0.94313 0.92991 0.94941 0.92066 0.89535 0.91347 0.91659 0.92217 0.92239 0.91974 0.92242 0.91413 0.89671 0.90403 0.92140 0.95716 0.90862 0.96119 0.94856 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.94 37.16 0.30 -2.24 16 2 C 0.17 3.49 3.25 -67.49 -0.22 3.27 16 3 H 0.03 0.70 7.63 -51.93 -0.40 0.30 16 4 C 0.04 0.75 3.85 -3.70 -0.01 0.73 16 5 N -0.51 -8.80 4.13 -223.95 -0.92 -9.72 16 6 C 0.05 0.78 3.17 -65.70 -0.21 0.58 16 7 H 0.09 1.29 7.96 -51.93 -0.41 0.88 16 8 C 0.01 0.16 6.58 38.21 0.25 0.41 16 9 O -0.37 -5.37 10.86 -35.23 -0.38 -5.75 16 10 C 0.09 1.13 1.19 -90.05 -0.11 1.02 16 11 C -0.16 -1.76 8.61 37.16 0.32 -1.44 16 12 C -0.14 -1.39 8.68 37.16 0.32 -1.07 16 13 C -0.14 -1.73 5.73 -25.21 -0.14 -1.88 16 14 C 0.04 0.78 4.84 -3.70 -0.02 0.76 16 15 C 0.20 4.52 2.34 -67.50 -0.16 4.36 16 16 H 0.10 2.48 6.10 -51.93 -0.32 2.17 16 17 C -0.13 -3.02 8.97 37.16 0.33 -2.68 16 18 N -0.58 -13.91 2.73 -157.01 -0.43 -14.34 16 19 C -0.25 -6.49 8.72 -15.06 -0.13 -6.62 16 20 H 0.07 1.81 6.16 -52.49 -0.32 1.48 16 21 C 0.00 0.05 4.93 -17.43 -0.09 -0.03 16 22 N -0.90 -24.88 9.77 55.49 0.54 -24.34 16 23 Si 0.90 21.33 29.59 -169.99 -5.03 16.31 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.06 1.27 7.54 -51.93 -0.39 0.88 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.97 7.57 -51.93 -0.39 0.58 16 30 H 0.03 0.59 6.32 -51.93 -0.33 0.27 16 31 H 0.06 0.95 6.21 -51.93 -0.32 0.63 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.04 5.51 -51.93 -0.29 0.76 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.06 0.70 8.11 -51.93 -0.42 0.27 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.11 5.80 -51.93 -0.30 0.80 16 41 H 0.08 0.90 7.70 -51.93 -0.40 0.50 16 42 H 0.06 1.07 7.99 -51.93 -0.41 0.66 16 43 H 0.02 0.49 7.96 -51.93 -0.41 0.07 16 44 H 0.07 1.87 6.89 -51.93 -0.36 1.51 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.03 0.72 7.10 -51.93 -0.37 0.35 16 47 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -27.45 343.21 -8.98 -36.43 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -8.37 Total: 1.07 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 0.44 Total: -4.83 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.81 Total: -48.40 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.45 -8.98 -36.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602849545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.831 kcal (2) G-P(sol) polarization free energy of solvation -27.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds