Wall clock time and date at job start Tue Mar 31 2020 06:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.78772 * 2 1 4 4 C 1.53242 * 109.62755 * 239.51314 * 2 1 3 5 5 N 1.46892 * 109.33751 * 186.46205 * 4 2 1 6 6 C 1.46902 * 110.99934 * 187.25342 * 5 4 2 7 7 H 1.08997 * 111.02009 * 50.78065 * 6 5 4 8 8 C 1.54947 * 111.12749 * 286.55801 * 6 5 4 9 9 O 1.43644 * 105.13772 * 205.63726 * 8 6 5 10 10 C 1.43236 * 109.97340 * 24.42250 * 9 8 6 11 11 C 1.52991 * 109.83498 * 238.77972 * 10 9 8 12 12 C 1.53002 * 109.90355 * 117.84543 * 10 9 8 13 13 C 1.54387 * 107.58854 * 358.29292 * 10 9 8 14 14 C 1.46897 * 111.27377 * 63.10639 * 5 4 2 15 15 C 1.53244 * 109.33837 * 296.89608 * 14 5 4 16 16 H 1.09004 * 109.62801 * 173.53811 * 15 14 5 17 17 C 1.53001 * 109.62765 * 294.11543 * 15 14 5 18 18 N 1.47080 * 108.52038 * 53.82775 * 15 14 5 19 19 C 1.36929 * 120.88052 * 128.79808 * 18 15 14 20 20 H 1.08000 * 120.00254 * 206.28632 * 19 18 15 21 21 C 1.38816 * 120.00422 * 26.28511 * 19 18 15 22 22 N 1.31619 * 119.99596 * 17.39294 * 21 19 18 23 23 Si 1.86802 * 120.00203 * 197.39378 * 21 19 18 24 24 H 1.48498 * 109.47034 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47206 * 120.00006 * 23 21 19 26 26 H 1.48498 * 109.46875 * 239.99958 * 23 21 19 27 27 H 1.08999 * 109.46817 * 180.48411 * 1 2 3 28 28 H 1.09000 * 109.47003 * 300.48261 * 1 2 3 29 29 H 1.09001 * 109.46919 * 60.48826 * 1 2 3 30 30 H 1.09000 * 109.49254 * 66.50228 * 4 2 1 31 31 H 1.09003 * 109.51534 * 306.43096 * 4 2 1 32 32 H 1.08996 * 110.30747 * 86.72008 * 8 6 5 33 33 H 1.08998 * 110.30656 * 324.54879 * 8 6 5 34 34 H 1.08999 * 109.47374 * 178.13459 * 11 10 9 35 35 H 1.09003 * 109.46850 * 298.13263 * 11 10 9 36 36 H 1.09001 * 109.47590 * 58.13312 * 11 10 9 37 37 H 1.08998 * 109.47116 * 301.82228 * 12 10 9 38 38 H 1.08993 * 109.46995 * 61.82281 * 12 10 9 39 39 H 1.09007 * 109.46992 * 181.82129 * 12 10 9 40 40 H 1.09002 * 110.84637 * 96.82981 * 13 10 9 41 41 H 1.08998 * 110.84849 * 220.44873 * 13 10 9 42 42 H 1.08998 * 109.49500 * 56.85041 * 14 5 4 43 43 H 1.08999 * 109.49799 * 176.93697 * 14 5 4 44 44 H 1.08991 * 109.47069 * 179.02755 * 17 15 14 45 45 H 1.08996 * 109.46971 * 299.03181 * 17 15 14 46 46 H 1.08999 * 109.46679 * 59.03097 * 17 15 14 47 47 H 0.97004 * 119.99841 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7323 -1.2438 5 7 3.5054 -0.8644 -1.1608 6 6 4.0568 -1.4063 -2.4100 7 1 3.6932 -0.8477 -3.2725 8 6 3.7426 -2.9171 -2.5502 9 8 4.7793 -3.4388 -3.3965 10 6 5.9416 -2.6054 -3.3171 11 6 6.2931 -2.0709 -4.7068 12 6 7.1188 -3.4054 -2.7557 13 6 5.6092 -1.4302 -2.3727 14 6 3.9016 -1.6871 -0.0101 15 6 3.4629 -0.9940 1.2843 16 1 3.6508 -1.6512 2.1334 17 6 4.2416 0.3115 1.4576 18 7 2.0240 -0.7029 1.1938 19 6 1.1671 -1.0765 2.1944 20 1 0.1255 -1.2572 1.9738 21 6 1.6373 -1.2232 3.4922 22 7 2.7889 -0.6887 3.8393 23 14 0.6355 -2.1790 4.7461 24 1 -0.6113 -2.6746 4.1097 25 1 1.4311 -3.3312 5.2409 26 1 0.2901 -1.2906 5.8848 27 1 -0.3633 -1.0276 0.0087 28 1 -0.3633 0.5213 0.8856 29 1 -0.3633 0.5062 -0.8943 30 1 1.7811 -0.1639 -2.1357 31 1 1.5924 -1.7226 -1.2966 32 1 2.7672 -3.0590 -3.0154 33 1 3.7714 -3.4015 -1.5742 34 1 7.1579 -1.4115 -4.6345 35 1 6.5266 -2.9051 -5.3685 36 1 5.4452 -1.5155 -5.1078 37 1 6.8565 -3.7965 -1.7727 38 1 7.3484 -4.2332 -3.4266 39 1 7.9902 -2.7564 -2.6680 40 1 5.9700 -1.6295 -1.3636 41 1 6.0210 -0.4964 -2.7556 42 1 3.4233 -2.6641 -0.0796 43 1 4.9845 -1.8112 -0.0073 44 1 3.9154 0.8108 2.3698 45 1 5.3073 0.0928 1.5243 46 1 4.0569 0.9610 0.6019 47 1 3.1173 -0.7908 4.7463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602849546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:34 Heat of formation + Delta-G solvation = -12.523293 kcal Electronic energy + Delta-G solvation = -24623.807721 eV Core-core repulsion = 21421.430555 eV Total energy + Delta-G solvation = -3202.377166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.23883 -38.07699 -34.80437 -33.14985 -32.60024 -31.45474 -29.52212 -27.61267 -27.42308 -26.03911 -25.67255 -24.61241 -23.05680 -21.15287 -20.07069 -19.90984 -18.46837 -16.46466 -16.17734 -15.76072 -15.02966 -14.82907 -14.43709 -14.05967 -13.93325 -13.83362 -13.51197 -13.32248 -13.14810 -12.73575 -12.53426 -12.20998 -11.89720 -11.80382 -11.71265 -11.50468 -11.37517 -11.13967 -11.02637 -10.94877 -10.78477 -10.59600 -10.46893 -10.36695 -10.32341 -10.00674 -9.92029 -9.46967 -9.37841 -9.20222 -8.45300 -7.73927 -6.61543 -5.74528 -3.14828 3.37768 3.46651 3.47595 3.72749 4.40494 4.51390 4.59440 4.83795 4.95899 5.07986 5.12808 5.28806 5.30355 5.41676 5.53097 5.62538 5.64596 5.71199 5.77581 5.85074 5.85455 5.92490 5.97238 6.02812 6.10030 6.11849 6.18488 6.25436 6.28643 6.32193 6.40861 6.45475 6.63450 6.85776 6.96266 7.03899 7.10507 7.13743 7.24439 7.51144 7.58561 7.75245 7.85667 7.97247 8.47542 9.26410 9.88994 10.46767 11.33019 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.004992 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.008742 B = 5608.098770 C = 5936.429451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.171 3.829 3 H 0.034 0.966 4 C 0.048 3.952 5 N -0.513 5.513 6 C 0.054 3.946 7 H 0.090 0.910 8 C 0.015 3.985 9 O -0.376 6.376 10 C 0.098 3.902 11 C -0.150 4.150 12 C -0.153 4.153 13 C -0.139 4.139 14 C 0.034 3.966 15 C 0.198 3.802 16 H 0.095 0.905 17 C -0.135 4.135 18 N -0.585 5.585 19 C -0.247 4.247 20 H 0.071 0.929 21 C 0.001 3.999 22 N -0.898 5.898 23 Si 0.897 3.103 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.029 0.971 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.019 0.981 46 H 0.033 0.967 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 -1.421 -13.373 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 H 0.051 0.949 4 C -0.081 4.081 5 N -0.236 5.236 6 C -0.056 4.056 7 H 0.108 0.892 8 C -0.063 4.063 9 O -0.295 6.295 10 C 0.059 3.941 11 C -0.207 4.207 12 C -0.211 4.211 13 C -0.177 4.177 14 C -0.095 4.095 15 C 0.091 3.909 16 H 0.113 0.887 17 C -0.194 4.194 18 N -0.308 5.308 19 C -0.377 4.377 20 H 0.089 0.911 21 C -0.197 4.197 22 N -0.543 5.543 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.052 0.948 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.750 -1.140 -13.254 14.492 hybrid contribution -0.761 -1.159 0.703 1.554 sum 4.989 -2.299 -12.551 13.701 Atomic orbital electron populations 1.21801 0.96061 1.01336 1.00352 1.20461 0.92249 0.94261 0.86589 0.94887 1.22692 0.86596 0.99247 0.99602 1.62017 1.11134 1.49511 1.00983 1.23414 0.94821 0.92836 0.94553 0.89164 1.24161 0.91306 0.95630 0.95230 1.88387 1.23437 1.50961 1.66680 1.22081 0.86817 0.90058 0.95160 1.22058 1.01608 1.00995 0.96056 1.22091 0.97180 1.00341 1.01443 1.23266 0.95630 0.98190 1.00623 1.23015 0.98906 0.94803 0.92730 1.20415 0.82904 0.95237 0.92313 0.88708 1.21949 0.96521 0.99460 1.01426 1.44291 1.03491 1.65057 1.17929 1.19237 0.92824 1.39048 0.86579 0.91135 1.24977 0.97650 1.00377 0.96677 1.70027 1.21108 1.45293 1.17889 0.86311 0.79576 0.79765 0.81648 1.20469 1.21765 1.21894 0.92937 0.91829 0.94254 0.92182 0.95256 0.90414 0.91339 0.91623 0.92262 0.92226 0.92123 0.92231 0.91587 0.89539 0.89893 0.95318 0.91873 0.90901 0.96157 0.94800 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.93 37.16 0.29 -2.24 16 2 C 0.17 3.49 3.26 -67.49 -0.22 3.27 16 3 H 0.03 0.72 7.63 -51.93 -0.40 0.33 16 4 C 0.05 0.84 4.70 -3.70 -0.02 0.82 16 5 N -0.51 -8.77 4.15 -223.66 -0.93 -9.70 16 6 C 0.05 0.77 3.16 -65.46 -0.21 0.57 16 7 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 8 C 0.01 0.22 6.63 38.19 0.25 0.47 16 9 O -0.38 -5.56 10.68 -35.23 -0.38 -5.94 16 10 C 0.10 1.21 1.27 -89.90 -0.11 1.09 16 11 C -0.15 -1.54 8.73 37.15 0.32 -1.21 16 12 C -0.15 -1.69 8.75 37.16 0.32 -1.37 16 13 C -0.14 -1.80 5.60 -24.78 -0.14 -1.94 16 14 C 0.03 0.65 4.11 -3.70 -0.02 0.63 16 15 C 0.20 4.52 2.35 -67.49 -0.16 4.36 16 16 H 0.10 2.48 6.11 -51.93 -0.32 2.16 16 17 C -0.13 -3.00 8.96 37.16 0.33 -2.67 16 18 N -0.58 -13.92 2.73 -157.00 -0.43 -14.35 16 19 C -0.25 -6.47 8.73 -15.06 -0.13 -6.60 16 20 H 0.07 1.82 6.15 -52.49 -0.32 1.50 16 21 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 22 N -0.90 -24.90 9.80 55.49 0.54 -24.35 16 23 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H 0.05 0.98 7.54 -51.93 -0.39 0.59 16 28 H 0.06 1.26 7.57 -51.93 -0.39 0.86 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 31 H 0.03 0.53 7.84 -51.93 -0.41 0.13 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.11 5.60 -51.93 -0.29 0.82 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.09 1.21 5.53 -51.93 -0.29 0.92 16 41 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 42 H 0.03 0.57 6.29 -51.93 -0.33 0.25 16 43 H 0.06 1.12 5.83 -51.93 -0.30 0.82 16 44 H 0.07 1.86 6.91 -51.93 -0.36 1.50 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.03 0.73 7.08 -51.93 -0.37 0.36 16 47 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -27.51 342.96 -8.95 -36.47 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.34 Total: 1.25 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 0.44 Total: -4.85 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.81 Total: -48.40 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.38 Total: -5.94 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.51 -8.95 -36.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602849546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.945 kcal (2) G-P(sol) polarization free energy of solvation -27.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds