Wall clock time and date at job start Tue Mar 31 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.78507 * 2 1 4 4 C 1.53232 * 109.63113 * 239.51414 * 2 1 3 5 5 N 1.46897 * 109.33909 * 186.46011 * 4 2 1 6 6 C 1.46905 * 111.00190 * 187.24822 * 5 4 2 7 7 H 1.08997 * 110.80387 * 305.76794 * 6 5 4 8 8 C 1.54991 * 110.91106 * 182.13120 * 6 5 4 9 9 O 1.44381 * 103.49379 * 204.78402 * 8 6 5 10 10 C 1.43735 * 106.97524 * 40.05975 * 9 8 6 11 11 C 1.53005 * 109.88019 * 92.91205 * 10 9 8 12 12 C 1.53003 * 109.88241 * 214.06436 * 10 9 8 13 13 C 1.54162 * 107.30038 * 333.46315 * 10 9 8 14 14 C 1.46899 * 111.27002 * 63.10771 * 5 4 2 15 15 C 1.53243 * 109.33709 * 296.89285 * 14 5 4 16 16 H 1.09003 * 109.78731 * 294.02499 * 15 14 5 17 17 C 1.53001 * 109.62984 * 173.54449 * 15 14 5 18 18 N 1.47078 * 108.52058 * 53.83003 * 15 14 5 19 19 C 1.36939 * 120.87999 * 128.83965 * 18 15 14 20 20 H 1.08003 * 119.99711 * 304.05708 * 19 18 15 21 21 C 1.38811 * 119.99987 * 124.06070 * 19 18 15 22 22 N 1.31621 * 119.99994 * 338.01948 * 21 19 18 23 23 Si 1.86800 * 120.00061 * 158.02443 * 21 19 18 24 24 H 1.48500 * 109.47195 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47192 * 119.99576 * 23 21 19 26 26 H 1.48493 * 109.47427 * 239.99972 * 23 21 19 27 27 H 1.08998 * 109.47951 * 307.24034 * 1 2 3 28 28 H 1.09001 * 109.46920 * 67.24425 * 1 2 3 29 29 H 1.08998 * 109.47371 * 187.23973 * 1 2 3 30 30 H 1.09003 * 109.49102 * 306.41622 * 4 2 1 31 31 H 1.09000 * 109.49856 * 66.47222 * 4 2 1 32 32 H 1.08997 * 110.61942 * 323.28605 * 8 6 5 33 33 H 1.09003 * 110.61428 * 86.27912 * 8 6 5 34 34 H 1.09003 * 109.46836 * 61.45302 * 11 10 9 35 35 H 1.08997 * 109.47360 * 181.45148 * 11 10 9 36 36 H 1.09002 * 109.46818 * 301.45960 * 11 10 9 37 37 H 1.09002 * 109.46698 * 58.54767 * 12 10 9 38 38 H 1.08998 * 109.47312 * 178.54716 * 12 10 9 39 39 H 1.08997 * 109.46849 * 298.54607 * 12 10 9 40 40 H 1.09006 * 110.52043 * 243.39341 * 13 10 9 41 41 H 1.09003 * 110.49107 * 120.73116 * 13 10 9 42 42 H 1.09005 * 109.49425 * 176.93823 * 14 5 4 43 43 H 1.08991 * 109.49807 * 56.85238 * 14 5 4 44 44 H 1.09006 * 109.46505 * 300.96567 * 17 15 14 45 45 H 1.09003 * 109.47038 * 180.97144 * 17 15 14 46 46 H 1.08993 * 109.47301 * 60.96731 * 17 15 14 47 47 H 0.97001 * 119.99895 * 185.04432 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0448 -0.7322 -1.2437 5 7 3.5054 -0.8643 -1.1607 6 6 4.0569 -1.4062 -2.4098 7 1 3.5676 -2.3435 -2.6745 8 6 5.5915 -1.5947 -2.3011 9 8 6.0366 -1.5328 -3.6732 10 6 5.2749 -0.4966 -4.3151 11 6 6.0351 0.8292 -4.2421 12 6 5.0149 -0.8707 -5.7758 13 6 3.9366 -0.3762 -3.5594 14 6 3.9016 -1.6870 -0.0100 15 6 3.4628 -0.9939 1.2844 16 1 4.0173 -0.0641 1.4113 17 6 3.7267 -1.9163 2.4763 18 7 2.0240 -0.7027 1.1939 19 6 1.1672 -1.0756 2.1949 20 1 1.1148 -2.1093 2.5037 21 6 0.3658 -0.1252 2.8125 22 7 0.7036 1.1463 2.7731 23 14 -1.1918 -0.6508 3.6996 24 1 -1.3450 -2.1245 3.5997 25 1 -1.1036 -0.2587 5.1291 26 1 -2.3647 0.0126 3.0757 27 1 -0.3635 0.6219 0.8181 28 1 -0.3633 0.3975 -0.9477 29 1 -0.3634 -1.0194 0.1295 30 1 1.5924 -1.7226 -1.2960 31 1 1.7807 -0.1641 -2.1357 32 1 6.0367 -0.7897 -1.7165 33 1 5.8290 -2.5645 -1.8639 34 1 6.9851 0.7327 -4.7677 35 1 5.4405 1.6152 -4.7077 36 1 6.2214 1.0842 -3.1988 37 1 4.4790 -1.8189 -5.8181 38 1 4.4153 -0.0930 -6.2488 39 1 5.9653 -0.9666 -6.3008 40 1 3.1035 -0.6313 -4.2145 41 1 3.8138 0.6300 -3.1588 42 1 4.9845 -1.8110 -0.0071 43 1 3.4234 -2.6640 -0.0795 44 1 3.1765 -2.8479 2.3434 45 1 3.3979 -1.4277 3.3935 46 1 4.7934 -2.1303 2.5409 47 1 0.1847 1.8014 3.2656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602849547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:37 Heat of formation + Delta-G solvation = -20.998900 kcal Electronic energy + Delta-G solvation = -24353.564424 eV Core-core repulsion = 21150.819729 eV Total energy + Delta-G solvation = -3202.744696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.05933 -38.04849 -34.83140 -33.15357 -32.68476 -31.63175 -29.62320 -27.47487 -27.41996 -26.61382 -25.18400 -24.75967 -22.72505 -20.44257 -20.13995 -19.70470 -19.11098 -16.66548 -15.94272 -15.89946 -15.03750 -14.88892 -14.53460 -14.32059 -14.09279 -13.74866 -13.51012 -13.22748 -12.86676 -12.75510 -12.50796 -12.22794 -11.98478 -11.82749 -11.66994 -11.56615 -11.37107 -11.28323 -10.91295 -10.88017 -10.76684 -10.64876 -10.53446 -10.42461 -10.29512 -10.09753 -9.82688 -9.75707 -9.57067 -9.37587 -8.21263 -7.85315 -6.26508 -5.70498 -3.51689 3.29944 3.40421 3.43398 3.78524 4.35486 4.44047 4.62172 4.77238 4.88445 5.10447 5.22818 5.27204 5.31824 5.35505 5.52495 5.60318 5.64543 5.79427 5.81712 5.82518 5.86397 5.88701 5.99934 6.06338 6.10429 6.16878 6.20796 6.25613 6.28142 6.36399 6.46989 6.50503 6.61685 6.69185 6.78658 6.92781 6.99903 7.21347 7.24011 7.49856 7.53071 7.67483 7.72123 7.90659 8.68148 9.25083 9.76605 10.59240 11.19154 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.004539 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.807268 B = 6167.019629 C = 6599.658972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.197 3.803 3 H 0.035 0.965 4 C 0.045 3.955 5 N -0.521 5.521 6 C 0.050 3.950 7 H 0.048 0.952 8 C 0.056 3.944 9 O -0.373 6.373 10 C 0.098 3.902 11 C -0.161 4.161 12 C -0.142 4.142 13 C -0.136 4.136 14 C 0.045 3.955 15 C 0.173 3.827 16 H 0.031 0.969 17 C -0.129 4.129 18 N -0.578 5.578 19 C -0.270 4.270 20 H 0.049 0.951 21 C 0.044 3.956 22 N -0.872 5.872 23 Si 0.879 3.121 24 H -0.273 1.273 25 H -0.288 1.288 26 H -0.285 1.285 27 H 0.079 0.921 28 H 0.024 0.976 29 H 0.048 0.952 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.027 0.973 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.034 0.966 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.106 -2.756 -12.282 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.091 3.909 3 H 0.053 0.947 4 C -0.084 4.084 5 N -0.246 5.246 6 C -0.059 4.059 7 H 0.066 0.934 8 C -0.021 4.021 9 O -0.292 6.292 10 C 0.059 3.941 11 C -0.218 4.218 12 C -0.199 4.199 13 C -0.174 4.174 14 C -0.084 4.084 15 C 0.067 3.933 16 H 0.049 0.951 17 C -0.187 4.187 18 N -0.302 5.302 19 C -0.400 4.400 20 H 0.066 0.934 21 C -0.160 4.160 22 N -0.511 5.511 23 Si 0.707 3.293 24 H -0.198 1.198 25 H -0.214 1.214 26 H -0.211 1.211 27 H 0.097 0.903 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.053 0.947 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.358 -2.244 -12.293 14.501 hybrid contribution -1.391 -0.824 0.491 1.690 sum 5.967 -3.068 -11.801 13.575 Atomic orbital electron populations 1.21842 0.95905 1.01925 0.99735 1.20307 0.92552 0.93942 0.84134 0.94741 1.22835 0.85903 0.99332 1.00346 1.62017 1.11924 1.49741 1.00934 1.23149 0.95415 0.96023 0.91362 0.93364 1.23566 0.92783 1.02004 0.83747 1.88861 1.61731 1.55776 1.22788 1.22085 0.90499 0.88190 0.93351 1.22227 1.00503 0.96315 1.02774 1.21896 1.01985 1.01919 0.94113 1.23052 0.96626 1.01422 0.96348 1.22756 0.98525 0.94716 0.92383 1.20534 0.87569 0.94968 0.90263 0.95114 1.21679 0.97824 0.99541 0.99612 1.43990 1.00602 1.68272 1.17385 1.18574 1.16530 0.91347 1.13535 0.93368 1.25608 0.99263 0.95527 0.95576 1.70090 1.38265 1.01259 1.41468 0.86647 0.84510 0.78885 0.79266 1.19784 1.21447 1.21111 0.90271 0.95721 0.93250 0.95588 0.92317 0.91091 0.89446 0.92294 0.91713 0.91879 0.92092 0.91409 0.92146 0.90998 0.89224 0.92124 0.95474 0.93423 0.91499 0.94746 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.02 37.16 0.30 -2.72 16 2 C 0.20 4.46 3.27 -67.49 -0.22 4.24 16 3 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.05 0.85 4.82 -3.71 -0.02 0.83 16 5 N -0.52 -9.14 4.47 -223.95 -1.00 -10.14 16 6 C 0.05 0.74 2.81 -65.70 -0.18 0.55 16 7 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 8 C 0.06 0.77 5.70 38.21 0.22 0.99 16 9 O -0.37 -5.25 10.86 -35.23 -0.38 -5.64 16 10 C 0.10 1.19 1.19 -90.01 -0.11 1.08 16 11 C -0.16 -1.77 8.62 37.16 0.32 -1.45 16 12 C -0.14 -1.43 8.67 37.16 0.32 -1.11 16 13 C -0.14 -1.78 5.00 -25.17 -0.13 -1.90 16 14 C 0.05 0.82 4.69 -3.70 -0.02 0.80 16 15 C 0.17 3.71 3.66 -67.49 -0.25 3.46 16 16 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 17 C -0.13 -2.53 8.21 37.16 0.31 -2.23 16 18 N -0.58 -13.99 2.79 -157.01 -0.44 -14.43 16 19 C -0.27 -7.05 6.56 -15.06 -0.10 -7.15 16 20 H 0.05 1.30 7.32 -52.48 -0.38 0.92 16 21 C 0.04 1.15 3.23 -17.43 -0.06 1.10 16 22 N -0.87 -24.42 12.44 55.49 0.69 -23.73 16 23 Si 0.88 20.68 29.61 -169.99 -5.03 15.65 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.08 1.98 5.41 -51.93 -0.28 1.69 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 1.11 7.69 -51.93 -0.40 0.71 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.01 7.30 -51.93 -0.38 0.63 16 32 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.09 1.13 7.90 -51.93 -0.41 0.72 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 41 H 0.09 1.24 7.61 -51.93 -0.40 0.85 16 42 H 0.06 0.97 6.51 -51.93 -0.34 0.63 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.94 7.66 -51.93 -0.40 0.54 16 45 H 0.07 1.46 7.65 -51.93 -0.40 1.06 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -27.88 350.86 -9.32 -37.20 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.83 Total: -0.69 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 0.39 Total: -3.50 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.75 Total: -48.30 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.38 Total: -5.64 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.88 -9.32 -37.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602849547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.200 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds