Wall clock time and date at job start Tue Mar 31 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47139 * 2 1 4 4 C 1.50697 * 109.46998 * 240.00167 * 2 1 3 5 5 H 1.08000 * 120.00186 * 245.05909 * 4 2 1 6 6 C 1.37877 * 120.00251 * 65.04901 * 4 2 1 7 7 N 1.31513 * 119.99828 * 5.69373 * 6 4 2 8 8 Si 1.86795 * 120.00172 * 185.68697 * 6 4 2 9 9 H 1.48501 * 109.47264 * 95.00227 * 8 6 4 10 10 H 1.48507 * 109.47424 * 215.00013 * 8 6 4 11 11 H 1.48497 * 109.47609 * 334.99882 * 8 6 4 12 12 N 1.46904 * 109.47333 * 120.00131 * 2 1 3 13 13 C 1.46902 * 110.99857 * 274.99715 * 12 2 1 14 14 H 1.09000 * 109.46975 * 35.00471 * 13 12 2 15 15 C 1.52997 * 109.47206 * 274.99780 * 13 12 2 16 16 C 1.50698 * 109.46987 * 155.00014 * 13 12 2 17 17 O 1.21284 * 120.00011 * 12.82173 * 16 13 12 18 18 N 1.34769 * 120.00096 * 192.82825 * 16 13 12 19 19 C 1.46927 * 120.63182 * 4.55300 * 18 16 13 20 20 H 1.09001 * 109.58472 * 6.60564 * 19 18 16 21 21 C 1.52998 * 109.70344 * 246.25185 * 19 18 16 22 22 C 1.53190 * 108.77615 * 126.39174 * 19 18 16 23 23 C 1.53035 * 109.31258 * 54.63903 * 22 19 18 24 24 C 1.53046 * 109.53595 * 298.63183 * 23 22 19 25 25 C 1.46928 * 120.63211 * 184.55288 * 18 16 13 26 26 H 1.09001 * 109.58656 * 113.82034 * 25 18 16 27 27 C 1.52995 * 109.70322 * 353.46850 * 25 18 16 28 28 H 1.08999 * 109.47052 * 184.89603 * 1 2 3 29 29 H 1.09006 * 109.46678 * 304.88955 * 1 2 3 30 30 H 1.08998 * 109.47501 * 64.89145 * 1 2 3 31 31 H 0.96998 * 120.00580 * 179.97438 * 7 6 4 32 32 H 1.00901 * 110.99703 * 151.04630 * 12 2 1 33 33 H 1.09001 * 109.47299 * 294.12021 * 15 13 12 34 34 H 1.09007 * 109.46802 * 54.11903 * 15 13 12 35 35 H 1.09004 * 109.47014 * 174.11408 * 15 13 12 36 36 H 1.09001 * 109.47160 * 300.34999 * 21 19 18 37 37 H 1.08999 * 109.47508 * 60.35566 * 21 19 18 38 38 H 1.09002 * 109.46834 * 180.35710 * 21 19 18 39 39 H 1.08999 * 109.49433 * 174.58519 * 22 19 18 40 40 H 1.09003 * 109.49894 * 294.68460 * 22 19 18 41 41 H 1.09002 * 109.46704 * 58.65318 * 23 22 19 42 42 H 1.09002 * 109.46378 * 178.61192 * 23 22 19 43 43 H 1.09009 * 109.49526 * 181.31823 * 24 23 22 44 44 H 1.08997 * 109.49930 * 301.41187 * 24 23 22 45 45 H 1.09001 * 109.46944 * 305.68092 * 27 25 18 46 46 H 1.08999 * 109.47874 * 65.68347 * 27 25 18 47 47 H 1.08997 * 109.47325 * 185.68858 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5841 -1.6337 -1.1336 6 6 1.7872 -0.1817 -2.4801 7 7 1.2144 0.9965 -2.5948 8 14 2.2689 -1.1390 -4.0101 9 1 1.0996 -1.9134 -4.4981 10 1 2.7123 -0.1938 -5.0662 11 1 3.3778 -2.0707 -3.6825 12 7 2.0197 -0.6925 1.1994 13 6 2.0826 0.2226 2.3469 14 1 1.2577 0.9329 2.2907 15 6 3.4112 0.9808 2.3223 16 6 1.9788 -0.5676 3.6259 17 8 2.0976 -1.7745 3.6044 18 7 1.7538 0.0666 4.7935 19 6 1.5087 1.5150 4.8236 20 1 1.4290 1.8933 3.8044 21 6 2.6614 2.2184 5.5430 22 6 0.1988 1.7780 5.5730 23 6 0.2658 1.1231 6.9545 24 6 0.4364 -0.3895 6.7961 25 6 1.7490 -0.6771 6.0606 26 1 2.5902 -0.3568 6.6755 27 6 1.8614 -2.1767 5.7790 28 1 -0.3633 -1.0239 0.0877 29 1 -0.3633 0.5879 0.8430 30 1 -0.3634 0.4361 -0.9305 31 1 1.0422 1.3687 -3.4738 32 1 2.9174 -1.1205 1.0286 33 1 4.2317 0.2815 2.4833 34 1 3.5336 1.4681 1.3550 35 1 3.4149 1.7331 3.1111 36 1 2.7394 1.8388 6.5618 37 1 3.5931 2.0260 5.0111 38 1 2.4726 3.2916 5.5687 39 1 0.0539 2.8523 5.6863 40 1 -0.6335 1.3555 5.0100 41 1 1.1132 1.5281 7.5078 42 1 -0.6554 1.3296 7.4994 43 1 0.4606 -0.8579 7.7802 44 1 -0.3981 -0.7916 6.2218 45 1 1.0738 -2.4765 5.0877 46 1 2.8342 -2.3916 5.3368 47 1 1.7561 -2.7305 6.7119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:20 Heat of formation + Delta-G solvation = -32.839424 kcal Electronic energy + Delta-G solvation = -24170.799311 eV Core-core repulsion = 20967.541171 eV Total energy + Delta-G solvation = -3203.258139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57971 -37.65518 -36.09642 -33.83073 -32.75209 -32.55194 -30.24816 -29.01688 -26.99822 -26.53890 -25.18435 -24.05404 -23.30601 -21.78446 -20.51070 -19.61165 -18.23258 -16.90476 -16.16459 -15.87651 -15.22115 -15.12924 -14.70662 -14.25421 -14.13987 -13.76602 -13.54946 -13.24463 -12.99112 -12.91622 -12.71751 -12.35783 -12.23451 -11.84763 -11.77238 -11.66728 -11.60242 -11.52705 -11.02215 -11.01298 -10.90252 -10.83729 -10.67097 -10.61078 -10.44134 -10.42499 -10.20207 -9.92912 -8.88782 -8.60554 -8.41401 -8.34447 -7.21022 -6.04709 -4.07631 3.10517 3.13293 3.31591 3.38390 3.42619 4.42002 4.52979 4.64438 4.71890 4.88114 5.00724 5.08916 5.21372 5.26421 5.30305 5.33663 5.37969 5.47237 5.52217 5.59024 5.63341 5.72579 5.78432 5.79840 5.86102 5.93534 5.95327 5.96870 6.10501 6.19206 6.21339 6.36403 6.48099 6.56391 6.80969 6.90208 7.11326 7.17064 7.39258 7.69845 7.81064 7.86050 8.19016 8.38004 8.64861 8.73358 9.04008 9.57972 11.04116 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.004239 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.176311 B = 6604.144450 C = 6900.990568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.212 3.788 3 H 0.009 0.991 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.667 5.667 13 C 0.069 3.931 14 H 0.090 0.910 15 C -0.178 4.178 16 C 0.524 3.476 17 O -0.515 6.515 18 N -0.612 5.612 19 C 0.131 3.869 20 H 0.096 0.904 21 C -0.165 4.165 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.132 4.132 25 C 0.145 3.855 26 H 0.063 0.937 27 C -0.135 4.135 28 H 0.034 0.966 29 H 0.004 0.996 30 H 0.068 0.932 31 H 0.261 0.739 32 H 0.340 0.660 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 4.228 19.243 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 H 0.027 0.973 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.298 5.298 13 C -0.045 4.045 14 H 0.108 0.892 15 C -0.237 4.237 16 C 0.312 3.688 17 O -0.389 6.389 18 N -0.348 5.348 19 C 0.028 3.972 20 H 0.114 0.886 21 C -0.223 4.223 22 C -0.169 4.169 23 C -0.157 4.157 24 C -0.170 4.170 25 C 0.042 3.958 26 H 0.081 0.919 27 C -0.192 4.192 28 H 0.053 0.947 29 H 0.023 0.977 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.158 0.842 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.148 3.420 19.215 19.517 hybrid contribution 0.867 0.285 -1.059 1.398 sum 0.718 3.706 18.155 18.544 Atomic orbital electron populations 1.21683 0.98284 0.98804 0.99122 1.19140 0.92117 0.92840 0.85402 0.97304 1.21239 1.35289 1.08544 0.90457 0.92073 1.24904 0.95209 0.94737 0.99013 1.69946 1.43265 1.16063 1.23687 0.86535 0.78800 0.79779 0.82610 1.20665 1.21363 1.19829 1.60443 1.33192 1.31440 1.04736 1.21468 0.97942 0.93981 0.91151 0.89170 1.22522 0.97548 1.00564 1.03059 1.20987 0.75036 0.88418 0.84328 1.90691 1.48406 1.14082 1.85709 1.48271 1.72533 1.07758 1.06244 1.21303 0.94468 0.80532 1.00942 0.88585 1.22234 0.98625 1.00352 1.01127 1.21936 0.97570 1.00908 0.96510 1.21535 1.01794 0.95436 0.96894 1.22016 0.98329 0.96268 1.00400 1.21157 0.96588 0.93253 0.84779 0.91894 1.22199 1.04930 0.92506 0.99573 0.94671 0.97685 0.91317 0.92968 0.84150 0.92510 0.90864 0.92384 0.92124 0.91947 0.91524 0.90828 0.91274 0.91714 0.91945 0.91247 0.91415 0.90566 0.91233 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 9.25 37.16 0.34 -2.64 16 2 C 0.21 5.34 2.27 -68.86 -0.16 5.18 16 3 H 0.01 0.25 7.08 -51.93 -0.37 -0.12 16 4 C -0.52 -14.25 8.50 -34.44 -0.29 -14.54 16 5 H 0.06 1.70 7.67 -52.49 -0.40 1.29 16 6 C 0.06 1.75 5.22 -17.82 -0.09 1.66 16 7 N -0.89 -25.33 11.95 55.43 0.66 -24.67 16 8 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.67 -14.82 5.57 -102.17 -0.57 -15.39 16 13 C 0.07 1.25 1.95 -68.87 -0.13 1.11 16 14 H 0.09 1.63 5.78 -51.93 -0.30 1.33 16 15 C -0.18 -2.79 8.91 37.16 0.33 -2.46 16 16 C 0.52 9.11 6.91 -10.99 -0.08 9.04 16 17 O -0.51 -10.45 11.90 5.55 0.07 -10.39 16 18 N -0.61 -8.29 2.68 -157.74 -0.42 -8.71 16 19 C 0.13 1.44 2.40 -67.60 -0.16 1.28 16 20 H 0.10 1.14 5.09 -51.93 -0.26 0.88 16 21 C -0.17 -1.49 8.72 37.16 0.32 -1.16 16 22 C -0.13 -1.25 5.55 -26.61 -0.15 -1.40 16 23 C -0.12 -1.02 5.68 -26.69 -0.15 -1.17 16 24 C -0.13 -1.33 5.37 -26.61 -0.14 -1.47 16 25 C 0.15 1.76 3.07 -67.60 -0.21 1.55 16 26 H 0.06 0.69 7.50 -51.93 -0.39 0.30 16 27 C -0.14 -1.88 7.60 37.15 0.28 -1.59 16 28 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.00 0.09 7.49 -51.93 -0.39 -0.30 16 30 H 0.07 1.83 6.61 -51.93 -0.34 1.49 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.34 7.68 8.00 -39.29 -0.31 7.37 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.26 7.37 -51.93 -0.38 0.88 16 35 H 0.06 0.74 4.98 -51.93 -0.26 0.49 16 36 H 0.06 0.51 5.74 -51.93 -0.30 0.21 16 37 H 0.06 0.61 6.70 -51.93 -0.35 0.26 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.50 6.51 -51.93 -0.34 0.17 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.26 6.65 -51.93 -0.35 0.92 16 46 H 0.07 1.10 6.86 -51.93 -0.36 0.74 16 47 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -29.89 346.01 -8.39 -38.29 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -8.04 Total: 5.85 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.28 Total: -6.62 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.33 Total: -48.77 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.89 -8.39 -38.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.447 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds