Wall clock time and date at job start Tue Mar 31 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47046 * 2 1 4 4 C 1.50704 * 109.47072 * 240.00497 * 2 1 3 5 5 H 1.08003 * 120.00185 * 240.00321 * 4 2 1 6 6 C 1.37881 * 120.00062 * 59.71762 * 4 2 1 7 7 N 1.31518 * 119.99930 * 0.28330 * 6 4 2 8 8 Si 1.86802 * 119.99915 * 180.27791 * 6 4 2 9 9 H 1.48497 * 109.47073 * 60.00635 * 8 6 4 10 10 H 1.48498 * 109.46624 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47070 * 300.00080 * 8 6 4 12 12 N 1.46893 * 109.47290 * 120.00536 * 2 1 3 13 13 C 1.46900 * 111.00046 * 274.99600 * 12 2 1 14 14 H 1.09001 * 109.46986 * 34.99903 * 13 12 2 15 15 C 1.53005 * 109.47347 * 275.00367 * 13 12 2 16 16 C 1.50699 * 109.47387 * 154.99998 * 13 12 2 17 17 O 1.21286 * 119.99856 * 351.28461 * 16 13 12 18 18 N 1.34777 * 120.00302 * 171.28100 * 16 13 12 19 19 C 1.46921 * 120.63231 * 205.05311 * 18 16 13 20 20 H 1.09005 * 109.58638 * 113.80143 * 19 18 16 21 21 C 1.52996 * 109.58949 * 353.37916 * 19 18 16 22 22 C 1.53187 * 108.77663 * 233.58416 * 19 18 16 23 23 C 1.53037 * 109.31451 * 305.36827 * 22 19 18 24 24 C 1.53034 * 109.53921 * 61.36465 * 23 22 19 25 25 C 1.46932 * 120.62869 * 24.77490 * 18 16 13 26 26 H 1.08995 * 109.59046 * 246.20312 * 25 18 16 27 27 C 1.53000 * 109.58444 * 6.62950 * 25 18 16 28 28 H 1.09002 * 109.46839 * 299.99882 * 1 2 3 29 29 H 1.08995 * 109.47034 * 59.99725 * 1 2 3 30 30 H 1.08997 * 109.47046 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99883 * 179.97438 * 7 6 4 32 32 H 1.00901 * 111.00495 * 151.04617 * 12 2 1 33 33 H 1.09000 * 109.46929 * 304.92138 * 15 13 12 34 34 H 1.08994 * 109.47208 * 64.92457 * 15 13 12 35 35 H 1.08999 * 109.46941 * 184.92445 * 15 13 12 36 36 H 1.08998 * 109.47240 * 55.38846 * 21 19 18 37 37 H 1.08995 * 109.47501 * 175.39616 * 21 19 18 38 38 H 1.09007 * 109.46701 * 295.39370 * 21 19 18 39 39 H 1.08999 * 109.49650 * 65.31971 * 22 19 18 40 40 H 1.09004 * 109.50171 * 185.41623 * 22 19 18 41 41 H 1.09013 * 109.45904 * 181.38404 * 23 22 19 42 42 H 1.09003 * 109.46191 * 301.33943 * 23 22 19 43 43 H 1.09002 * 109.50033 * 58.58519 * 24 23 22 44 44 H 1.08999 * 109.49776 * 178.68227 * 24 23 22 45 45 H 1.08998 * 109.47769 * 46.91541 * 27 25 18 46 46 H 1.09000 * 109.47007 * 166.92062 * 27 25 18 47 47 H 1.09003 * 109.47101 * 286.91638 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6945 -0.2426 -2.4828 7 7 0.9384 0.8268 -2.6034 8 14 2.3107 -1.1276 -4.0081 9 1 1.8151 -2.5274 -4.0023 10 1 1.8117 -0.4303 -5.2204 11 1 3.7958 -1.1282 -4.0139 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 1 1.2578 0.9328 2.2907 15 6 3.4113 0.9808 2.3223 16 6 1.9788 -0.5678 3.6258 17 8 1.7062 -1.7491 3.5883 18 7 2.1889 0.0380 4.8113 19 6 2.6324 -0.7355 5.9790 20 1 3.6395 -0.4276 6.2602 21 6 2.6252 -2.2272 5.6390 22 6 1.6707 -0.4690 7.1412 23 6 1.5768 1.0389 7.3848 24 6 1.0249 1.7262 6.1338 25 6 1.9848 1.4855 4.9588 26 1 2.9400 1.9709 5.1585 27 6 1.3774 2.0514 3.6736 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7010 1.1560 -3.4844 32 1 2.9174 -1.1206 1.0286 33 1 4.2356 0.2684 2.2901 34 1 3.4486 1.6198 1.4401 35 1 3.4960 1.5943 3.2192 36 1 3.2363 -2.4010 4.7533 37 1 3.0315 -2.7930 6.4774 38 1 1.6026 -2.5505 5.4441 39 1 0.6837 -0.8596 6.8935 40 1 2.0417 -0.9604 8.0406 41 1 0.9120 1.2300 8.2273 42 1 2.5682 1.4331 7.6082 43 1 0.0439 1.3149 5.8956 44 1 0.9363 2.7972 6.3162 45 1 0.5487 1.4194 3.3543 46 1 1.0134 3.0621 3.8581 47 1 2.1374 2.0758 2.8926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:23 Heat of formation + Delta-G solvation = 22.110252 kcal Electronic energy + Delta-G solvation = -24393.410993 eV Core-core repulsion = 21192.535650 eV Total energy + Delta-G solvation = -3200.875343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.87743 -37.41930 -36.57268 -34.45805 -32.73461 -32.49715 -30.28215 -28.88254 -27.20265 -26.03398 -25.24385 -24.58000 -22.39473 -21.59626 -20.78202 -19.56645 -18.93819 -16.69822 -16.00325 -15.83032 -15.44199 -15.12770 -14.63348 -14.31952 -14.17311 -14.06956 -13.56658 -13.31398 -12.85832 -12.76206 -12.52806 -12.34929 -12.21706 -11.90086 -11.77249 -11.67038 -11.36361 -11.20517 -11.03074 -10.92252 -10.84766 -10.72380 -10.66062 -10.45588 -10.35344 -10.12527 -9.96988 -9.79579 -8.87817 -8.74086 -8.44266 -8.23147 -7.16374 -6.01122 -4.06570 3.03664 3.16361 3.33312 3.37329 3.41362 4.42155 4.56185 4.62130 4.70314 4.86674 5.01204 5.13399 5.20238 5.25127 5.25321 5.32356 5.40493 5.48577 5.57808 5.64807 5.66451 5.74443 5.75037 5.81434 5.88722 5.93026 6.03095 6.06079 6.09956 6.15123 6.30313 6.32202 6.45746 6.55072 6.86332 6.93526 7.15810 7.24469 7.49872 7.73417 7.82472 7.92073 8.29322 8.43050 8.64150 8.75223 9.04101 9.59130 11.05249 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031033 B = 0.004320 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.041754 B = 6479.480551 C = 6907.548895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.215 3.785 3 H 0.002 0.998 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.666 5.666 13 C 0.031 3.969 14 H 0.133 0.867 15 C -0.185 4.185 16 C 0.527 3.473 17 O -0.502 6.502 18 N -0.629 5.629 19 C 0.149 3.851 20 H 0.064 0.936 21 C -0.142 4.142 22 C -0.132 4.132 23 C -0.118 4.118 24 C -0.130 4.130 25 C 0.150 3.850 26 H 0.070 0.930 27 C -0.216 4.216 28 H 0.001 0.999 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.332 0.668 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 4.430 18.875 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.108 3.892 3 H 0.020 0.980 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.297 5.297 13 C -0.083 4.083 14 H 0.150 0.850 15 C -0.243 4.243 16 C 0.315 3.685 17 O -0.375 6.375 18 N -0.368 5.368 19 C 0.045 3.955 20 H 0.082 0.918 21 C -0.199 4.199 22 C -0.170 4.170 23 C -0.156 4.156 24 C -0.168 4.168 25 C 0.046 3.954 26 H 0.088 0.912 27 C -0.272 4.272 28 H 0.020 0.980 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.235 3.614 18.823 19.297 hybrid contribution 1.062 0.206 -0.963 1.448 sum 3.297 3.820 17.860 18.559 Atomic orbital electron populations 1.21745 0.97975 0.99562 0.99062 1.19105 0.92461 0.92268 0.85337 0.98028 1.21218 1.31327 1.12555 0.90374 0.92263 1.24894 0.95033 0.95011 0.98961 1.69881 1.36622 1.22965 1.23521 0.86585 0.79015 0.79891 0.82055 1.20188 1.21341 1.20369 1.60466 1.32602 1.31795 1.04882 1.22967 0.99429 0.94901 0.90976 0.84978 1.22728 0.97882 1.01130 1.02607 1.21007 0.75146 0.87968 0.84345 1.90655 1.42893 1.17048 1.86862 1.48251 1.71068 1.07693 1.09772 1.21113 0.96339 0.92701 0.85309 0.91777 1.22180 1.04463 0.92929 1.00350 1.22014 1.00668 0.96242 0.98074 1.21508 1.01143 0.95450 0.97496 1.22060 0.99500 1.00608 0.94677 1.21101 0.97988 0.80797 0.95496 0.91197 1.23729 1.03668 1.01286 0.98505 0.98033 0.90025 0.94822 0.92919 0.84935 0.92613 0.91045 0.91369 0.91539 0.93879 0.90500 0.91417 0.91306 0.91919 0.91982 0.91361 0.90973 0.90614 0.91559 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.17 37.16 0.34 -2.82 16 2 C 0.22 5.42 2.42 -68.87 -0.17 5.26 16 3 H 0.00 0.06 7.16 -51.93 -0.37 -0.32 16 4 C -0.52 -14.25 8.60 -34.44 -0.30 -14.54 16 5 H 0.06 1.64 7.62 -52.48 -0.40 1.24 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.23 11.31 55.43 0.63 -24.61 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.67 -14.82 5.55 -102.17 -0.57 -15.39 16 13 C 0.03 0.55 1.82 -68.86 -0.13 0.43 16 14 H 0.13 2.36 2.96 -53.80 -0.16 2.20 16 15 C -0.18 -2.80 7.38 37.16 0.27 -2.53 16 16 C 0.53 9.21 6.10 -10.99 -0.07 9.15 16 17 O -0.50 -10.45 12.52 5.55 0.07 -10.38 16 18 N -0.63 -8.55 2.82 -157.48 -0.44 -9.00 16 19 C 0.15 1.79 3.49 -67.61 -0.24 1.55 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 21 C -0.14 -1.95 7.65 37.16 0.28 -1.67 16 22 C -0.13 -1.31 5.37 -26.62 -0.14 -1.46 16 23 C -0.12 -1.01 5.88 -26.69 -0.16 -1.17 16 24 C -0.13 -1.22 5.37 -26.39 -0.14 -1.36 16 25 C 0.15 1.64 2.45 -67.37 -0.16 1.48 16 26 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 27 C -0.22 -2.56 6.89 37.16 0.26 -2.31 16 28 H 0.00 0.01 7.43 -51.93 -0.39 -0.37 16 29 H 0.08 2.21 6.06 -51.93 -0.31 1.90 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.33 7.44 7.91 -39.29 -0.31 7.13 16 33 H 0.05 0.86 8.04 -51.93 -0.42 0.44 16 34 H 0.07 1.15 7.49 -51.93 -0.39 0.76 16 35 H 0.07 0.85 4.76 -51.93 -0.25 0.60 16 36 H 0.07 1.07 6.73 -51.93 -0.35 0.72 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 1.23 6.87 -51.93 -0.36 0.87 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.08 1.07 5.89 -51.93 -0.31 0.76 16 46 H 0.07 0.65 8.10 -51.93 -0.42 0.22 16 47 H 0.11 1.41 2.98 -55.03 -0.16 1.25 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -30.14 340.17 -8.58 -38.71 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.93 Total: 7.48 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.44 Total: -8.35 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.38 Total: -49.00 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.14 -8.58 -38.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.821 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds