Wall clock time and date at job start Tue Mar 31 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46914 * 2 1 4 4 C 1.50704 * 109.46955 * 240.00129 * 2 1 3 5 5 H 1.08006 * 119.99646 * 243.31351 * 4 2 1 6 6 C 1.37878 * 120.00030 * 63.31246 * 4 2 1 7 7 N 1.31508 * 120.00007 * 0.19337 * 6 4 2 8 8 Si 1.86794 * 119.99705 * 180.19189 * 6 4 2 9 9 H 1.48499 * 109.47310 * 90.00229 * 8 6 4 10 10 H 1.48507 * 109.47192 * 210.00206 * 8 6 4 11 11 H 1.48500 * 109.47483 * 329.99817 * 8 6 4 12 12 N 1.46895 * 109.47061 * 120.00194 * 2 1 3 13 13 C 1.46905 * 110.99957 * 276.64315 * 12 2 1 14 14 H 1.08996 * 109.46817 * 331.06910 * 13 12 2 15 15 C 1.52997 * 109.47113 * 91.07436 * 13 12 2 16 16 C 1.50696 * 109.46956 * 211.07154 * 13 12 2 17 17 O 1.21287 * 120.00270 * 2.36431 * 16 13 12 18 18 N 1.34778 * 119.99764 * 182.36389 * 16 13 12 19 19 C 1.46917 * 120.63360 * 333.25993 * 18 16 13 20 20 H 1.09000 * 109.58761 * 113.79940 * 19 18 16 21 21 C 1.53004 * 109.58706 * 353.37382 * 19 18 16 22 22 C 1.53193 * 108.77839 * 233.58619 * 19 18 16 23 23 C 1.53035 * 109.31291 * 305.36592 * 22 19 18 24 24 C 1.53037 * 109.54266 * 61.36036 * 23 22 19 25 25 C 1.46927 * 120.62789 * 152.98026 * 18 16 13 26 26 H 1.09000 * 109.58804 * 246.20099 * 25 18 16 27 27 C 1.53004 * 109.58914 * 6.62965 * 25 18 16 28 28 H 1.09005 * 109.47338 * 175.69784 * 1 2 3 29 29 H 1.09005 * 109.47287 * 295.69622 * 1 2 3 30 30 H 1.09000 * 109.47488 * 55.69998 * 1 2 3 31 31 H 0.97003 * 120.00155 * 7.02528 * 7 6 4 32 32 H 1.00900 * 111.00163 * 40.60100 * 12 2 1 33 33 H 1.09002 * 109.47303 * 27.24978 * 15 13 12 34 34 H 1.08999 * 109.47474 * 147.25175 * 15 13 12 35 35 H 1.09001 * 109.46841 * 267.25165 * 15 13 12 36 36 H 1.09003 * 109.47251 * 73.93937 * 21 19 18 37 37 H 1.08996 * 109.47265 * 193.93860 * 21 19 18 38 38 H 1.08999 * 109.46740 * 313.94313 * 21 19 18 39 39 H 1.09001 * 109.49522 * 65.31414 * 22 19 18 40 40 H 1.08998 * 109.49999 * 185.41263 * 22 19 18 41 41 H 1.09000 * 109.46497 * 181.38855 * 23 22 19 42 42 H 1.09006 * 109.46077 * 301.34379 * 23 22 19 43 43 H 1.09001 * 109.49448 * 58.58838 * 24 23 22 44 44 H 1.08999 * 109.50468 * 178.68426 * 24 23 22 45 45 H 1.08991 * 109.47259 * 64.88322 * 27 25 18 46 46 H 1.09001 * 109.47008 * 184.88769 * 27 25 18 47 47 H 1.09006 * 109.46751 * 304.88101 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6083 -1.6187 -1.1323 6 6 1.7565 -0.2008 -2.4816 7 7 1.0583 0.9072 -2.6010 8 14 2.3745 -1.0843 -4.0069 9 1 1.3566 -2.0679 -4.4559 10 1 2.6176 -0.0952 -5.0877 11 1 3.6409 -1.7922 -3.6901 12 7 2.0196 -0.6925 1.1994 13 6 2.0455 0.2126 2.3562 14 1 2.2024 1.2354 2.0137 15 6 0.7134 0.1235 3.1033 16 6 3.1673 -0.1854 3.2803 17 8 3.9023 -1.1029 2.9820 18 7 3.3539 0.4783 4.4385 19 6 2.9248 1.8764 4.5776 20 1 2.1143 1.9394 5.3037 21 6 2.4459 2.4032 3.2232 22 6 4.1142 2.7115 5.0619 23 6 4.6757 2.0957 6.3455 24 6 5.1675 0.6751 6.0592 25 6 3.9849 -0.1847 5.5878 26 1 3.2591 -0.2865 6.3947 27 6 4.4883 -1.5677 5.1695 28 1 -0.3634 -1.0248 -0.0771 29 1 -0.3634 0.4456 0.9261 30 1 -0.3634 0.5791 -0.8489 31 1 0.8245 1.4206 -1.8119 32 1 1.4659 -1.5131 1.3946 33 1 0.2717 -0.8600 2.9427 34 1 0.8836 0.2756 4.1692 35 1 0.0356 0.8914 2.7304 36 1 1.4715 1.9738 2.9902 37 1 2.3640 3.4893 3.2641 38 1 3.1612 2.1216 2.4504 39 1 4.8882 2.7216 4.2945 40 1 3.7856 3.7315 5.2613 41 1 5.5067 2.7020 6.7059 42 1 3.8942 2.0633 7.1048 43 1 5.9316 0.7044 5.2824 44 1 5.5886 0.2456 6.9682 45 1 5.2803 -1.4573 4.4289 46 1 4.8775 -2.0920 6.0423 47 1 3.6656 -2.1390 4.7394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:28 Heat of formation + Delta-G solvation = 15.092820 kcal Electronic energy + Delta-G solvation = -24444.359663 eV Core-core repulsion = 21243.180022 eV Total energy + Delta-G solvation = -3201.179641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85732 -37.54136 -36.64868 -34.59615 -32.81485 -32.65162 -30.03538 -28.92946 -27.27168 -26.47558 -24.72958 -24.68237 -22.18057 -21.66453 -20.76281 -20.41126 -18.97065 -16.95866 -16.21486 -15.91233 -15.45876 -15.02650 -14.59111 -14.28295 -14.15144 -13.71860 -13.59295 -13.45116 -12.98587 -12.79002 -12.75278 -12.44782 -12.17676 -12.11085 -11.86090 -11.72597 -11.53789 -11.48442 -11.05922 -10.95798 -10.89025 -10.85437 -10.70691 -10.62275 -10.55635 -10.09956 -10.03042 -9.79361 -8.96865 -8.46841 -8.28461 -8.23608 -7.24434 -6.23866 -3.95889 2.97969 3.11191 3.49920 3.54728 3.70792 4.51110 4.58292 4.60137 4.67616 4.83021 4.94919 5.09380 5.13726 5.19369 5.22373 5.34088 5.42868 5.43508 5.48277 5.53635 5.57341 5.67622 5.71314 5.77029 5.83132 5.87963 5.91011 5.97447 6.04860 6.08476 6.11984 6.26636 6.29451 6.47365 6.51902 6.59932 6.78108 6.87950 7.03800 7.40165 7.67535 7.97764 8.30438 8.47011 8.67538 8.72373 8.98337 9.73018 11.10701 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025325 B = 0.004506 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.371029 B = 6211.936750 C = 6498.557238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.205 3.795 3 H 0.023 0.977 4 C -0.572 4.572 5 H 0.057 0.943 6 C 0.016 3.984 7 N -0.922 5.922 8 Si 1.071 2.929 9 H -0.290 1.290 10 H -0.287 1.287 11 H -0.288 1.288 12 N -0.655 5.655 13 C 0.015 3.985 14 H 0.142 0.858 15 C -0.173 4.173 16 C 0.528 3.472 17 O -0.498 6.498 18 N -0.632 5.632 19 C 0.151 3.849 20 H 0.069 0.931 21 C -0.198 4.198 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.132 4.132 25 C 0.149 3.851 26 H 0.065 0.935 27 C -0.144 4.144 28 H 0.039 0.961 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.268 0.732 32 H 0.330 0.670 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.044 0.956 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 4.139 19.609 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.097 3.903 3 H 0.040 0.960 4 C -0.611 4.611 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.900 3.100 9 H -0.217 1.217 10 H -0.213 1.213 11 H -0.214 1.214 12 N -0.285 5.285 13 C -0.099 4.099 14 H 0.159 0.841 15 C -0.232 4.232 16 C 0.316 3.684 17 O -0.369 6.369 18 N -0.371 5.371 19 C 0.048 3.952 20 H 0.087 0.913 21 C -0.254 4.254 22 C -0.169 4.169 23 C -0.155 4.155 24 C -0.170 4.170 25 C 0.046 3.954 26 H 0.082 0.918 27 C -0.201 4.201 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.673 3.704 17.580 18.337 hybrid contribution -1.005 0.132 2.027 2.267 sum 2.668 3.836 19.607 20.156 Atomic orbital electron populations 1.22757 1.01299 1.00618 0.99440 1.19354 0.88939 0.94029 0.87976 0.95968 1.22016 1.36279 1.11791 0.90973 0.92469 1.25741 0.94684 0.97119 1.01125 1.70790 1.36049 1.15529 1.33685 0.83518 0.76042 0.75258 0.75199 1.21662 1.21261 1.21447 1.60359 1.59214 1.07184 1.01715 1.23324 0.91803 1.02183 0.92558 0.84100 1.22673 0.97644 1.02424 1.00449 1.20971 0.85022 0.81952 0.80459 1.90658 1.44094 1.30703 1.71492 1.48224 1.63606 1.12366 1.12918 1.20983 0.95819 0.80889 0.97547 0.91259 1.23248 1.03796 1.01905 0.96446 1.21995 0.98265 0.98701 0.97975 1.21500 1.00547 0.96175 0.97325 1.22089 0.98198 0.95323 1.01402 1.21201 0.93577 0.92948 0.87649 0.91751 1.22174 1.03270 0.94245 1.00379 0.94190 0.96215 0.91532 0.91965 0.85170 0.92164 0.92460 0.91574 0.88840 0.91284 0.90401 0.91296 0.90899 0.91862 0.91998 0.91333 0.91310 0.90367 0.93707 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 8.66 37.16 0.32 -3.82 16 2 C 0.21 5.09 2.21 -68.87 -0.15 4.94 16 3 H 0.02 0.59 7.05 -51.93 -0.37 0.23 16 4 C -0.57 -16.37 8.80 -34.44 -0.30 -16.68 16 5 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 6 C 0.02 0.45 5.32 -17.82 -0.09 0.36 16 7 N -0.92 -27.39 12.89 55.43 0.71 -26.68 16 8 Si 1.07 25.90 29.90 -169.99 -5.08 20.82 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.66 -14.48 5.53 -102.17 -0.57 -15.04 16 13 C 0.01 0.26 1.96 -68.87 -0.13 0.12 16 14 H 0.14 2.45 2.59 -74.06 -0.19 2.25 16 15 C -0.17 -2.49 6.90 37.16 0.26 -2.23 16 16 C 0.53 9.25 5.85 -10.99 -0.06 9.18 16 17 O -0.50 -10.52 12.61 5.55 0.07 -10.45 16 18 N -0.63 -8.55 2.54 -157.48 -0.40 -8.95 16 19 C 0.15 1.64 2.59 -67.60 -0.18 1.47 16 20 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 21 C -0.20 -2.32 7.04 37.16 0.26 -2.06 16 22 C -0.13 -1.23 5.33 -26.61 -0.14 -1.38 16 23 C -0.12 -1.00 5.88 -26.69 -0.16 -1.16 16 24 C -0.13 -1.32 5.40 -26.39 -0.14 -1.46 16 25 C 0.15 1.78 3.51 -67.37 -0.24 1.55 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 C -0.14 -1.96 7.66 37.16 0.28 -1.68 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.02 0.37 5.59 -51.93 -0.29 0.08 16 30 H 0.07 1.66 5.77 -51.93 -0.30 1.36 16 31 H 0.27 7.81 5.66 -40.82 -0.23 7.58 16 32 H 0.33 7.16 7.73 -39.29 -0.30 6.86 16 33 H 0.06 0.91 7.42 -51.93 -0.39 0.52 16 34 H 0.06 0.72 6.62 -51.93 -0.34 0.37 16 35 H 0.07 0.90 6.20 -51.93 -0.32 0.58 16 36 H 0.09 1.15 3.51 -51.93 -0.18 0.97 16 37 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.08 1.13 6.06 -51.93 -0.31 0.81 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 1.26 6.86 -51.93 -0.36 0.90 16 46 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 1.02 6.77 -51.93 -0.35 0.67 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -31.96 337.03 -8.45 -40.42 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.79 Total: 7.65 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.48 Total: -12.84 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.25 Total: -50.67 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.96 -8.45 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.511 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds