Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48494 * 109.47062 * 299.72984 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46903 * 109.47099 * 119.99286 * 2 1 3 13 13 C 1.46901 * 111.00062 * 275.00162 * 12 2 1 14 14 C 1.50704 * 109.46926 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99947 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99629 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99565 * 179.97438 * 16 14 13 18 18 H 1.08997 * 109.47085 * 35.00184 * 17 16 14 19 19 C 1.53003 * 109.47418 * 274.99797 * 17 16 14 20 20 C 1.52996 * 109.47040 * 180.02562 * 19 17 16 21 21 C 1.52996 * 109.47459 * 60.00259 * 20 19 17 22 22 C 1.53001 * 109.47111 * 300.00069 * 21 20 19 23 23 H 1.09000 * 109.47413 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.46953 * 299.99890 * 22 21 20 25 25 C 1.52995 * 109.47384 * 59.99733 * 22 21 20 26 26 H 1.09001 * 109.47475 * 60.00094 * 25 22 21 27 27 C 1.52994 * 109.47539 * 180.02562 * 25 22 21 28 28 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 29 29 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 30 30 H 1.08998 * 109.46886 * 186.37472 * 1 2 3 31 31 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 32 32 H 1.00899 * 110.99424 * 151.04940 * 12 2 1 33 33 H 1.08998 * 109.47341 * 300.00360 * 13 12 2 34 34 H 1.09000 * 109.46876 * 60.00301 * 13 12 2 35 35 H 0.96994 * 120.00747 * 0.02562 * 16 14 13 36 36 H 1.09001 * 109.47042 * 300.00663 * 19 17 16 37 37 H 1.09002 * 109.46860 * 59.99707 * 19 17 16 38 38 H 1.08997 * 109.47129 * 300.00181 * 20 19 17 39 39 H 1.09008 * 109.46753 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.47519 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.46810 * 59.99401 * 21 20 19 42 42 H 1.08998 * 109.47166 * 179.97438 * 24 22 21 43 43 H 1.09005 * 109.46906 * 300.00259 * 24 22 21 44 44 H 1.09000 * 109.47111 * 59.99754 * 24 22 21 45 45 H 1.08996 * 109.47681 * 179.97438 * 27 25 22 46 46 H 1.09000 * 109.46959 * 299.99912 * 27 25 22 47 47 H 1.08997 * 109.47302 * 59.99777 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0388 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5885 -0.5212 3.5558 15 8 2.8688 -1.6981 3.4701 16 7 2.7286 0.1210 4.7324 17 6 3.2200 -0.6024 5.9077 18 1 3.9575 -1.3424 5.5968 19 6 2.0508 -1.3068 6.5989 20 6 2.5640 -2.0617 7.8267 21 6 3.2110 -1.0737 8.7993 22 6 4.3802 -0.3693 8.1082 23 1 4.8409 0.3349 8.8010 24 6 5.4156 -1.4080 7.6723 25 6 3.8671 0.3857 6.8805 26 1 3.1294 1.1257 7.1909 27 6 5.0363 1.0896 6.1890 28 1 -0.3633 0.6094 0.8274 29 1 -0.3634 0.4118 -0.9415 30 1 -0.3633 -1.0213 0.1141 31 1 2.2478 -1.8381 -3.4691 32 1 2.9173 -1.1203 1.0288 33 1 2.7587 1.0465 2.1182 34 1 1.0870 0.6165 2.5525 35 1 2.5034 1.0620 4.8012 36 1 1.3133 -0.5667 6.9097 37 1 1.5895 -2.0103 5.9058 38 1 3.3016 -2.8016 7.5161 39 1 1.7309 -2.5639 8.3188 40 1 3.5762 -1.6115 9.6742 41 1 2.4733 -0.3338 9.1098 42 1 6.2484 -0.9062 7.1796 43 1 5.7812 -1.9459 8.5471 44 1 4.9546 -2.1119 6.9794 45 1 4.6709 1.6271 5.3141 46 1 5.4976 1.7934 6.8818 47 1 5.7737 0.3494 5.8784 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -63.529733 kcal Electronic energy + Delta-G solvation = -23069.340869 eV Core-core repulsion = 19864.751898 eV Total energy + Delta-G solvation = -3204.588971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43878 -38.67492 -35.80084 -34.38056 -33.03166 -32.50113 -30.74431 -29.54382 -27.67424 -26.19862 -25.44609 -24.27080 -22.28492 -21.51677 -20.33168 -19.63668 -18.81634 -17.63746 -16.68325 -16.46636 -15.54986 -15.25968 -14.80195 -14.54959 -14.31192 -14.12203 -13.83418 -13.53700 -13.35396 -13.13219 -12.73886 -12.56825 -12.43064 -12.23049 -11.93979 -11.82693 -11.76317 -11.58916 -11.40942 -11.24742 -10.97762 -10.95883 -10.68707 -10.53488 -10.40982 -10.18911 -9.98084 -9.71733 -9.41037 -8.93427 -8.88351 -8.22653 -7.51361 -6.46009 -4.06695 2.94458 3.23946 3.37349 3.39746 3.59002 4.30500 4.41700 4.47674 4.51225 4.79219 4.90763 5.06438 5.07349 5.10220 5.15601 5.19002 5.21542 5.28859 5.32711 5.43255 5.54737 5.55488 5.65154 5.71781 5.74161 5.75859 5.77566 5.81703 5.94028 5.94356 6.00136 6.09722 6.13792 6.30871 6.41334 6.59479 6.67718 6.77793 6.89535 7.47206 7.58207 7.75944 8.12354 8.40524 8.44870 8.54497 8.97036 9.62515 10.94384 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033604 B = 0.003212 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.034892 B = 8715.573829 C = 8863.062059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.189 3.811 3 H -0.007 1.007 4 C -0.605 4.605 5 H 0.062 0.938 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 1.048 2.952 9 H -0.285 1.285 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.664 5.664 13 C 0.039 3.961 14 C 0.514 3.486 15 O -0.523 6.523 16 N -0.735 5.735 17 C 0.150 3.850 18 H 0.090 0.910 19 C -0.130 4.130 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.082 4.082 23 H 0.072 0.928 24 C -0.157 4.157 25 C -0.093 4.093 26 H 0.073 0.927 27 C -0.150 4.150 28 H 0.016 0.984 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.346 0.654 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 5.612 26.020 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.081 3.919 3 H 0.011 0.989 4 C -0.643 4.643 5 H 0.080 0.920 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.877 3.123 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.297 5.297 13 C -0.094 4.094 14 C 0.300 3.700 15 O -0.397 6.397 16 N -0.388 5.388 17 C 0.046 3.954 18 H 0.108 0.892 19 C -0.169 4.169 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.101 4.101 23 H 0.090 0.910 24 C -0.214 4.214 25 C -0.112 4.112 26 H 0.091 0.909 27 C -0.207 4.207 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.166 0.834 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.803 5.625 24.964 25.742 hybrid contribution 1.049 -0.149 0.976 1.441 sum 3.851 5.476 25.940 26.790 Atomic orbital electron populations 1.22144 0.98244 1.00463 0.98762 1.19459 0.92209 0.92245 0.88013 0.98910 1.22092 1.40773 1.10333 0.91120 0.92034 1.25739 0.94654 1.05048 0.92007 1.70840 1.41586 1.10024 1.31423 0.83996 0.77020 0.75244 0.76054 1.21085 1.19983 1.21220 1.60356 1.33984 1.31186 1.04143 1.21874 1.01193 0.95048 0.91264 1.20965 0.77055 0.87868 0.84103 1.90682 1.48509 1.15880 1.84663 1.46125 1.69072 1.13877 1.09739 1.20978 0.95754 0.94112 0.84586 0.89240 1.21931 0.97973 0.99831 0.97150 1.21535 1.00386 0.98110 0.95653 1.21601 0.97282 0.98495 0.97948 1.21073 0.95913 0.97135 0.95931 0.90997 1.22040 0.98759 0.99122 1.01505 1.21396 0.97694 0.97039 0.95055 0.90851 1.21888 0.98053 1.00393 1.00376 0.96458 0.92823 0.92979 0.92121 0.83446 0.93386 0.88997 0.77037 0.92032 0.91203 0.91434 0.91915 0.91926 0.92006 0.92339 0.92781 0.91787 0.92419 0.92652 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.05 37.16 0.34 -2.82 16 2 C 0.19 4.59 2.18 -68.87 -0.15 4.44 16 3 H -0.01 -0.15 6.46 -51.92 -0.34 -0.49 16 4 C -0.61 -17.33 8.83 -34.44 -0.30 -17.63 16 5 H 0.06 1.92 7.92 -52.49 -0.42 1.50 16 6 C 0.03 0.90 5.29 -17.82 -0.09 0.81 16 7 N -0.90 -28.05 13.70 55.43 0.76 -27.30 16 8 Si 1.05 25.10 26.29 -169.99 -4.47 20.63 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.27 -6.03 5.76 56.52 0.33 -5.71 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.66 -14.65 5.93 -109.22 -0.65 -15.29 16 13 C 0.04 0.67 5.97 -4.97 -0.03 0.64 16 14 C 0.51 8.29 7.83 -10.99 -0.09 8.20 16 15 O -0.52 -10.60 15.87 5.55 0.09 -10.51 16 16 N -0.74 -8.52 4.38 -53.80 -0.24 -8.76 16 17 C 0.15 1.60 1.62 -67.92 -0.11 1.49 16 18 H 0.09 1.17 5.87 -51.93 -0.30 0.86 16 19 C -0.13 -1.36 5.49 -26.73 -0.15 -1.51 16 20 C -0.12 -1.02 5.65 -26.74 -0.15 -1.17 16 21 C -0.12 -0.82 5.45 -26.73 -0.15 -0.97 16 22 C -0.08 -0.59 2.72 -90.62 -0.25 -0.84 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 C -0.16 -1.22 8.15 37.16 0.30 -0.92 16 25 C -0.09 -0.74 2.07 -90.62 -0.19 -0.93 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 C -0.15 -1.20 8.68 37.15 0.32 -0.88 16 28 H 0.02 0.33 7.62 -51.93 -0.40 -0.07 16 29 H 0.05 1.25 4.88 -51.93 -0.25 1.00 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.27 8.35 8.73 -40.82 -0.36 7.99 16 32 H 0.35 8.08 7.96 -39.29 -0.31 7.77 16 33 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 34 H 0.09 1.43 7.56 -51.93 -0.39 1.03 16 35 H 0.40 3.53 8.39 -40.82 -0.34 3.19 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 39 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 45 H 0.06 0.48 7.44 -51.93 -0.39 0.10 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -32.37 351.50 -8.16 -40.53 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.26 Total: 7.47 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.69 Total: -12.08 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.12 Total: -51.35 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -4.47 Total: 20.63 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.37 -8.16 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.995 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds