Wall clock time and date at job start Tue Mar 31 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46882 * 2 1 4 4 C 1.50696 * 109.47205 * 239.99882 * 2 1 3 5 5 H 1.07999 * 120.00001 * 245.46118 * 4 2 1 6 6 C 1.37879 * 119.99908 * 65.46155 * 4 2 1 7 7 N 1.31509 * 120.00118 * 9.54612 * 6 4 2 8 8 Si 1.86800 * 119.99918 * 189.54324 * 6 4 2 9 9 H 1.48501 * 109.46941 * 84.99555 * 8 6 4 10 10 H 1.48497 * 109.47367 * 204.99307 * 8 6 4 11 11 H 1.48501 * 109.47287 * 324.99493 * 8 6 4 12 12 N 1.46898 * 109.47169 * 119.99414 * 2 1 3 13 13 C 1.46897 * 111.00574 * 275.00254 * 12 2 1 14 14 C 1.50693 * 109.47431 * 179.97438 * 13 12 2 15 15 O 1.21286 * 119.99932 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00249 * 180.02562 * 14 13 12 17 17 C 1.46495 * 120.00261 * 180.02562 * 16 14 13 18 18 H 1.09009 * 109.47099 * 34.99581 * 17 16 14 19 19 C 1.52999 * 109.47123 * 274.99976 * 17 16 14 20 20 C 1.53002 * 109.47253 * 299.99770 * 19 17 16 21 21 C 1.53007 * 109.47087 * 300.00324 * 20 19 17 22 22 C 1.53005 * 109.47148 * 59.99482 * 21 20 19 23 23 H 1.08994 * 109.47125 * 60.00005 * 22 21 20 24 24 C 1.52999 * 109.46799 * 180.02562 * 22 21 20 25 25 C 1.52997 * 109.46934 * 300.00165 * 22 21 20 26 26 H 1.08995 * 109.47599 * 299.99757 * 25 22 21 27 27 C 1.53005 * 109.46934 * 180.02562 * 25 22 21 28 28 H 1.09001 * 109.47288 * 63.75472 * 1 2 3 29 29 H 1.08999 * 109.47328 * 183.76191 * 1 2 3 30 30 H 1.09008 * 109.47160 * 303.76001 * 1 2 3 31 31 H 0.97004 * 120.00238 * 179.97438 * 7 6 4 32 32 H 1.00898 * 111.00095 * 151.04478 * 12 2 1 33 33 H 1.08998 * 109.47124 * 300.00543 * 13 12 2 34 34 H 1.09006 * 109.46814 * 60.00008 * 13 12 2 35 35 H 0.96999 * 119.99909 * 359.97438 * 16 14 13 36 36 H 1.09001 * 109.47351 * 59.99820 * 19 17 16 37 37 H 1.09004 * 109.47320 * 180.02562 * 19 17 16 38 38 H 1.08990 * 109.47390 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46808 * 59.99397 * 20 19 17 40 40 H 1.09005 * 109.46862 * 299.99935 * 21 20 19 41 41 H 1.08998 * 109.46819 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.46651 * 180.02562 * 24 22 21 43 43 H 1.09000 * 109.47245 * 299.99667 * 24 22 21 44 44 H 1.08994 * 109.47526 * 59.99947 * 24 22 21 45 45 H 1.09004 * 109.47214 * 299.99874 * 27 25 22 46 46 H 1.09001 * 109.47160 * 59.99955 * 27 25 22 47 47 H 1.08998 * 109.47331 * 179.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5785 -1.6371 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.2991 1.0355 -2.5935 8 14 2.1764 -1.1779 -4.0101 9 1 1.0246 -2.0611 -4.3242 10 1 2.4230 -0.2612 -5.1520 11 1 3.3850 -2.0069 -3.7709 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5873 -0.5216 3.5560 15 8 2.8677 -1.6985 3.4703 16 7 2.7272 0.1204 4.7328 17 6 3.2185 -0.6030 5.9081 18 1 3.9561 -1.3430 5.5971 19 6 2.0493 -1.3075 6.5989 20 6 1.0140 -0.2689 7.0354 21 6 1.6612 0.7187 8.0084 22 6 2.8306 1.4232 7.3175 23 1 2.4651 1.9614 6.4430 24 6 3.4781 2.4102 8.2907 25 6 3.8657 0.3845 6.8811 26 1 4.2314 -0.1538 7.7555 27 6 5.0354 1.0890 6.1908 28 1 -0.3634 0.4544 -0.9217 29 1 -0.3634 -1.0254 0.0674 30 1 -0.3634 0.5711 0.8544 31 1 1.1322 1.4107 -3.4724 32 1 2.9173 -1.1204 1.0288 33 1 2.7587 1.0463 2.1182 34 1 1.0870 0.6164 2.5525 35 1 2.5033 1.0617 4.8013 36 1 1.5881 -2.0111 5.9057 37 1 2.4147 -1.8455 7.4737 38 1 0.1808 -0.7708 7.5271 39 1 0.6485 0.2694 6.1609 40 1 2.0268 0.1803 8.8829 41 1 0.9238 1.4588 8.3189 42 1 4.3109 2.9124 7.7984 43 1 2.7408 3.1503 8.6020 44 1 3.8437 1.8717 9.1650 45 1 4.6702 1.6276 5.3163 46 1 5.4964 1.7923 6.8843 47 1 5.7731 0.3492 5.8803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:38 Heat of formation + Delta-G solvation = -66.448091 kcal Electronic energy + Delta-G solvation = -23135.320612 eV Core-core repulsion = 19930.605092 eV Total energy + Delta-G solvation = -3204.715521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42566 -38.37337 -35.54787 -34.00735 -33.19873 -32.44849 -31.06614 -29.09822 -27.39091 -25.98794 -25.40271 -24.58631 -22.06797 -21.22074 -20.64280 -19.72973 -19.00548 -17.27774 -16.08313 -15.95341 -15.46197 -15.03770 -14.89190 -14.54257 -14.32648 -14.08945 -13.81822 -13.41190 -13.20929 -12.97994 -12.62936 -12.37539 -12.24854 -12.07516 -11.99743 -11.83685 -11.62116 -11.59807 -11.36399 -11.01727 -10.87972 -10.70302 -10.69739 -10.42189 -10.31569 -10.22713 -10.11254 -10.00331 -9.33276 -8.88607 -8.83655 -8.42058 -7.25898 -6.05342 -4.06723 3.06232 3.33282 3.37359 3.39016 3.43709 4.40151 4.41657 4.43782 4.47384 4.80309 4.95380 5.11146 5.17181 5.20221 5.25543 5.28944 5.32793 5.34709 5.43069 5.45317 5.55735 5.62378 5.68251 5.72037 5.79126 5.81980 5.91240 5.94649 5.96529 6.03765 6.11723 6.14704 6.18614 6.26138 6.70136 6.79643 7.08421 7.14476 7.35502 7.71838 7.80958 7.85623 8.17066 8.36434 8.59424 8.70398 9.04236 9.58200 11.04024 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030670 B = 0.003210 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.712548 B = 8719.833161 C = 8779.078206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.210 3.790 3 H 0.009 0.991 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.672 5.672 13 C 0.043 3.957 14 C 0.513 3.487 15 O -0.526 6.526 16 N -0.730 5.730 17 C 0.153 3.847 18 H 0.085 0.915 19 C -0.131 4.131 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.088 4.088 23 H 0.069 0.931 24 C -0.149 4.149 25 C -0.092 4.092 26 H 0.081 0.919 27 C -0.150 4.150 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.007 0.993 31 H 0.261 0.739 32 H 0.341 0.659 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.395 0.605 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 3.726 22.771 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.103 3.897 3 H 0.027 0.973 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.305 5.305 13 C -0.090 4.090 14 C 0.300 3.700 15 O -0.400 6.400 16 N -0.385 5.385 17 C 0.048 3.952 18 H 0.103 0.897 19 C -0.169 4.169 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.107 4.107 23 H 0.088 0.912 24 C -0.206 4.206 25 C -0.111 4.111 26 H 0.099 0.901 27 C -0.207 4.207 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.230 0.770 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.812 2.744 22.709 23.046 hybrid contribution 0.705 0.580 -1.054 1.395 sum 3.517 3.324 21.655 22.189 Atomic orbital electron populations 1.21663 0.98211 0.98981 0.98922 1.19152 0.92211 0.92857 0.85488 0.97317 1.21222 1.35904 1.08283 0.90468 0.92002 1.24908 0.95197 0.94639 0.99045 1.69966 1.45045 1.13978 1.23840 0.86570 0.78844 0.80036 0.82315 1.20468 1.21410 1.19901 1.60479 1.33486 1.31685 1.04883 1.21809 1.01066 0.94992 0.91127 1.21045 0.76934 0.87870 0.84140 1.90666 1.48693 1.15952 1.84738 1.46152 1.69013 1.13829 1.09539 1.20857 0.95562 0.93856 0.84950 0.89671 1.21921 0.96618 0.98133 1.00278 1.21495 0.97839 0.97077 0.99204 1.21612 0.97042 0.98188 0.98266 1.21168 0.95247 0.95824 0.98469 0.91248 1.21887 1.00705 0.98870 0.99132 1.21437 0.95393 0.96164 0.98117 0.90091 1.21885 0.97636 1.00591 1.00578 0.91751 0.94521 0.97384 0.92914 0.83999 0.93521 0.89185 0.76973 0.91138 0.91522 0.92171 0.91736 0.92048 0.92074 0.92273 0.92791 0.92766 0.92355 0.92331 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 9.27 37.16 0.34 -2.59 16 2 C 0.21 5.37 2.47 -68.87 -0.17 5.20 16 3 H 0.01 0.25 7.74 -51.93 -0.40 -0.15 16 4 C -0.52 -14.58 8.48 -34.44 -0.29 -14.87 16 5 H 0.06 1.74 7.69 -52.49 -0.40 1.34 16 6 C 0.06 1.80 5.17 -17.82 -0.09 1.71 16 7 N -0.89 -25.59 12.16 55.43 0.67 -24.92 16 8 Si 0.89 21.61 29.55 -169.99 -5.02 16.58 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.67 -15.15 5.93 -109.23 -0.65 -15.80 16 13 C 0.04 0.77 5.96 -4.98 -0.03 0.74 16 14 C 0.51 8.49 7.83 -10.99 -0.09 8.41 16 15 O -0.53 -10.74 15.87 5.55 0.09 -10.65 16 16 N -0.73 -8.75 3.54 -53.81 -0.19 -8.94 16 17 C 0.15 1.65 2.23 -67.93 -0.15 1.50 16 18 H 0.09 1.11 7.58 -51.92 -0.39 0.71 16 19 C -0.13 -1.38 5.60 -26.73 -0.15 -1.53 16 20 C -0.12 -1.08 5.77 -26.73 -0.15 -1.23 16 21 C -0.11 -0.84 5.20 -26.73 -0.14 -0.98 16 22 C -0.09 -0.64 2.08 -90.62 -0.19 -0.83 16 23 H 0.07 0.53 6.51 -51.93 -0.34 0.19 16 24 C -0.15 -0.94 8.84 37.16 0.33 -0.61 16 25 C -0.09 -0.75 2.04 -90.62 -0.18 -0.94 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 C -0.15 -1.24 8.68 37.16 0.32 -0.92 16 28 H 0.06 1.70 6.83 -51.93 -0.35 1.35 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.01 0.16 7.55 -51.92 -0.39 -0.23 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.34 7.96 7.96 -39.29 -0.31 7.64 16 33 H 0.05 0.79 8.05 -51.93 -0.42 0.38 16 34 H 0.09 1.52 7.51 -51.93 -0.39 1.13 16 35 H 0.40 3.92 6.65 -40.82 -0.27 3.65 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.65 7.60 -51.93 -0.39 0.25 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 46 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -30.68 359.69 -8.81 -39.49 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.49 Total: 5.76 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.64 Total: -6.95 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.16 Total: -49.66 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.68 -8.81 -39.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.959 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds