Wall clock time and date at job start Tue Mar 31 2020 06:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47222 * 2 1 4 4 C 1.50693 * 109.46943 * 240.00242 * 2 1 3 5 5 H 1.08004 * 120.00342 * 239.99794 * 4 2 1 6 6 C 1.37879 * 120.00300 * 60.00042 * 4 2 1 7 7 N 1.31509 * 119.99680 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47425 * 59.99992 * 8 6 4 10 10 H 1.48503 * 109.47112 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47199 * 299.99736 * 8 6 4 12 12 N 1.46898 * 109.47111 * 120.00096 * 2 1 3 13 13 C 1.46904 * 111.00243 * 274.99646 * 12 2 1 14 14 C 1.50700 * 109.47000 * 179.97438 * 13 12 2 15 15 O 1.21279 * 120.00083 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99710 * 180.02562 * 14 13 12 17 17 C 1.46492 * 119.99920 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.47152 * 35.00144 * 17 16 14 19 19 C 1.52996 * 109.47364 * 275.00061 * 17 16 14 20 20 C 1.53008 * 109.47409 * 179.97438 * 19 17 16 21 21 C 1.52993 * 109.46733 * 60.00092 * 20 19 17 22 22 C 1.52996 * 109.47473 * 300.00094 * 21 20 19 23 23 H 1.09004 * 109.47368 * 300.00213 * 22 21 20 24 24 C 1.53002 * 109.47346 * 180.02562 * 22 21 20 25 25 C 1.53000 * 109.47328 * 60.00001 * 22 21 20 26 26 H 1.09002 * 109.47398 * 180.02562 * 25 22 21 27 27 C 1.52997 * 109.47060 * 60.00126 * 25 22 21 28 28 H 1.09003 * 109.46788 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46767 * 299.99577 * 1 2 3 30 30 H 1.08991 * 109.47352 * 59.99843 * 1 2 3 31 31 H 0.97001 * 119.99810 * 180.02562 * 7 6 4 32 32 H 1.00907 * 110.99863 * 151.04486 * 12 2 1 33 33 H 1.08998 * 109.46688 * 60.00400 * 13 12 2 34 34 H 1.08997 * 109.47221 * 300.00733 * 13 12 2 35 35 H 0.97001 * 119.99763 * 0.02562 * 16 14 13 36 36 H 1.09004 * 109.47552 * 300.00148 * 19 17 16 37 37 H 1.09001 * 109.46993 * 60.00434 * 19 17 16 38 38 H 1.09002 * 109.47021 * 180.02562 * 20 19 17 39 39 H 1.09004 * 109.46943 * 300.00592 * 20 19 17 40 40 H 1.09000 * 109.47250 * 60.00079 * 21 20 19 41 41 H 1.09004 * 109.46862 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.46986 * 299.99746 * 24 22 21 43 43 H 1.08993 * 109.47662 * 59.99968 * 24 22 21 44 44 H 1.09002 * 109.47075 * 180.02562 * 24 22 21 45 45 H 1.09002 * 109.47153 * 300.00319 * 27 25 22 46 46 H 1.08998 * 109.47533 * 59.99948 * 27 25 22 47 47 H 1.08996 * 109.47853 * 180.02562 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3212 -1.1202 -4.0079 9 1 1.8257 -2.5201 -4.0078 10 1 1.8268 -0.4197 -5.2204 11 1 3.8063 -1.1208 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 2.0826 0.2226 2.3469 14 6 2.5874 -0.5220 3.5560 15 8 2.8677 -1.6988 3.4701 16 7 2.7274 0.1201 4.7328 17 6 3.2187 -0.6035 5.9080 18 1 3.9562 -1.3434 5.5970 19 6 2.0495 -1.3080 6.5988 20 6 2.5627 -2.0642 7.8259 21 6 3.2103 -1.0772 8.7991 22 6 4.3796 -0.3726 8.1084 23 1 5.1170 -1.1126 7.7970 24 6 5.0276 0.6140 9.0818 25 6 3.8664 0.3835 6.8813 26 1 4.6995 0.8851 6.3889 27 6 2.8315 1.4222 7.3183 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 0.7081 1.1609 -3.4843 32 1 2.9174 -1.1206 1.0287 33 1 1.0872 0.6162 2.5526 34 1 2.7589 1.0462 2.1182 35 1 2.5029 1.0612 4.8015 36 1 1.3119 -0.5681 6.9098 37 1 1.5884 -2.0115 5.9056 38 1 1.7297 -2.5665 8.3178 39 1 3.3001 -2.8041 7.5145 40 1 2.4730 -0.3372 9.1105 41 1 3.5764 -1.6160 9.6731 42 1 4.2905 1.3540 9.3935 43 1 5.3933 0.0750 9.9558 44 1 5.8604 1.1162 8.5895 45 1 1.9984 0.9203 7.8104 46 1 3.2928 2.1254 8.0117 47 1 2.4655 1.9607 6.4441 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:40 Heat of formation + Delta-G solvation = -63.339459 kcal Electronic energy + Delta-G solvation = -22855.926435 eV Core-core repulsion = 19651.345715 eV Total energy + Delta-G solvation = -3204.580720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38563 -38.61368 -35.59578 -34.37058 -32.81876 -32.45672 -30.78457 -29.04174 -27.52923 -26.06597 -25.50225 -24.65622 -22.26310 -21.59233 -20.06972 -19.71588 -18.72241 -17.25116 -16.19597 -16.09337 -15.53853 -15.27421 -14.92537 -14.59141 -14.37425 -14.02256 -13.88760 -13.30901 -13.15803 -13.00059 -12.80097 -12.57009 -12.38857 -12.21886 -11.84714 -11.77440 -11.54766 -11.32641 -11.21924 -10.94765 -10.89125 -10.75685 -10.64704 -10.34944 -10.33780 -10.30598 -10.12526 -10.03948 -9.32098 -8.87882 -8.81895 -8.45693 -7.26294 -6.01867 -4.07730 3.04108 3.31991 3.33946 3.37414 3.42029 4.37165 4.42484 4.43802 4.53235 4.86041 4.91180 5.03780 5.08229 5.11079 5.21410 5.28829 5.33481 5.37653 5.42292 5.44989 5.48612 5.57321 5.64943 5.70477 5.76145 5.85970 5.87285 5.91930 5.93707 5.99813 6.05854 6.11943 6.19075 6.34632 6.67121 6.85167 7.12445 7.20618 7.45637 7.70523 7.80974 7.89987 8.27622 8.39208 8.57636 8.68975 9.02610 9.58118 11.04673 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037650 B = 0.002892 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.508281 B = 9680.939673 C = 9746.668518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.672 5.672 13 C 0.043 3.957 14 C 0.513 3.487 15 O -0.525 6.525 16 N -0.737 5.737 17 C 0.153 3.847 18 H 0.084 0.916 19 C -0.131 4.131 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.084 4.084 23 H 0.071 0.929 24 C -0.148 4.148 25 C -0.093 4.093 26 H 0.075 0.925 27 C -0.155 4.155 28 H 0.033 0.967 29 H 0.003 0.997 30 H 0.082 0.918 31 H 0.261 0.739 32 H 0.340 0.660 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.396 0.604 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 2.471 23.885 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.305 5.305 13 C -0.090 4.090 14 C 0.300 3.700 15 O -0.399 6.399 16 N -0.391 5.391 17 C 0.048 3.952 18 H 0.102 0.898 19 C -0.170 4.170 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.103 4.103 23 H 0.090 0.910 24 C -0.206 4.206 25 C -0.112 4.112 26 H 0.093 0.907 27 C -0.212 4.212 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.231 0.769 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.259 1.476 23.801 24.224 hybrid contribution 0.881 0.636 -1.059 1.518 sum 5.139 2.113 22.742 23.411 Atomic orbital electron populations 1.21735 0.97796 0.99541 0.99292 1.19144 0.92703 0.92250 0.85379 0.98093 1.21232 1.31509 1.12594 0.90342 0.92094 1.24909 0.95023 0.95003 0.99039 1.69884 1.36635 1.22945 1.23590 0.86553 0.79089 0.79835 0.81890 1.20124 1.21313 1.20303 1.60504 1.33391 1.31711 1.04910 1.21814 1.01134 0.94966 0.91089 1.21074 0.76900 0.87888 0.84157 1.90666 1.48588 1.15941 1.84726 1.46206 1.69249 1.13957 1.09659 1.20850 0.95882 0.93907 0.84591 0.89756 1.21961 0.98144 0.99803 0.97097 1.21487 1.00374 0.97926 0.95695 1.21661 0.97450 0.98366 0.97921 1.21090 0.97284 0.97292 0.94659 0.91021 1.21878 1.00509 0.99219 0.98945 1.21377 0.98358 0.96049 0.95409 0.90707 1.22016 0.99295 0.98558 1.01309 0.94795 0.97808 0.89974 0.92872 0.84116 0.89061 0.93519 0.76906 0.91637 0.91268 0.91867 0.91823 0.91605 0.92097 0.92314 0.92753 0.92707 0.91694 0.92173 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.19 37.16 0.34 -2.82 16 2 C 0.21 5.48 2.60 -68.87 -0.18 5.30 16 3 H 0.00 0.04 7.80 -51.93 -0.40 -0.36 16 4 C -0.52 -14.58 8.59 -34.44 -0.30 -14.88 16 5 H 0.06 1.71 7.62 -52.48 -0.40 1.31 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.58 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.67 -15.32 5.93 -109.22 -0.65 -15.96 16 13 C 0.04 0.78 5.97 -4.97 -0.03 0.75 16 14 C 0.51 8.66 7.83 -10.98 -0.09 8.57 16 15 O -0.52 -10.87 15.87 5.56 0.09 -10.79 16 16 N -0.74 -9.08 5.00 -53.81 -0.27 -9.35 16 17 C 0.15 1.70 2.14 -67.94 -0.15 1.55 16 18 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 19 C -0.13 -1.41 5.22 -26.73 -0.14 -1.55 16 20 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 21 C -0.12 -0.85 4.93 -26.74 -0.13 -0.98 16 22 C -0.08 -0.63 2.49 -90.62 -0.23 -0.85 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 24 C -0.15 -0.93 8.84 37.16 0.33 -0.60 16 25 C -0.09 -0.77 2.41 -90.62 -0.22 -0.99 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 C -0.15 -1.10 7.98 37.16 0.30 -0.81 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 30 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.34 7.96 7.93 -39.29 -0.31 7.65 16 33 H 0.09 1.56 7.44 -51.93 -0.39 1.18 16 34 H 0.05 0.79 8.05 -51.93 -0.42 0.38 16 35 H 0.40 3.91 6.87 -40.82 -0.28 3.63 16 36 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.46 6.43 -51.93 -0.33 0.12 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 46 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 47 H 0.05 0.38 6.51 -51.93 -0.34 0.04 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -30.96 353.82 -8.79 -39.75 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.16 Total: 6.22 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.74 Total: -6.86 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.29 Total: -50.27 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.96 -8.79 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.591 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds