Wall clock time and date at job start Tue Mar 31 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46785 * 2 1 4 4 C 1.50694 * 109.47129 * 240.00303 * 2 1 3 5 5 H 1.08000 * 119.99818 * 239.99668 * 4 2 1 6 6 C 1.37876 * 120.00523 * 60.00119 * 4 2 1 7 7 N 1.31516 * 119.99920 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00415 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47540 * 89.99427 * 8 6 4 10 10 H 1.48498 * 109.47024 * 210.00108 * 8 6 4 11 11 H 1.48508 * 109.46764 * 329.99456 * 8 6 4 12 12 N 1.46894 * 109.47022 * 119.99947 * 2 1 3 13 13 C 1.46900 * 111.00177 * 275.00080 * 12 2 1 14 14 C 1.50701 * 109.47331 * 180.02562 * 13 12 2 15 15 O 1.21284 * 119.99770 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00162 * 180.02562 * 14 13 12 17 17 C 1.46492 * 119.99930 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.47696 * 34.99761 * 17 16 14 19 19 C 1.52997 * 109.47244 * 274.99857 * 17 16 14 20 20 C 1.53005 * 109.47452 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47159 * 59.99536 * 20 19 17 22 22 C 1.52997 * 109.47317 * 300.00546 * 21 20 19 23 23 H 1.09002 * 109.47153 * 299.99641 * 22 21 20 24 24 C 1.53002 * 109.46817 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.47060 * 59.99960 * 22 21 20 26 26 H 1.08992 * 109.47399 * 59.99823 * 25 22 21 27 27 C 1.53001 * 109.46886 * 180.02562 * 25 22 21 28 28 H 1.08996 * 109.47410 * 300.00051 * 1 2 3 29 29 H 1.09008 * 109.47098 * 59.99684 * 1 2 3 30 30 H 1.08998 * 109.47203 * 179.97438 * 1 2 3 31 31 H 0.96997 * 120.00664 * 180.02562 * 7 6 4 32 32 H 1.00904 * 111.00208 * 38.95357 * 12 2 1 33 33 H 1.09002 * 109.47439 * 60.00181 * 13 12 2 34 34 H 1.09000 * 109.47029 * 300.00326 * 13 12 2 35 35 H 0.96998 * 119.99716 * 359.97438 * 16 14 13 36 36 H 1.09002 * 109.47153 * 300.00242 * 19 17 16 37 37 H 1.09001 * 109.47289 * 60.00326 * 19 17 16 38 38 H 1.09000 * 109.47360 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.46935 * 300.00125 * 20 19 17 40 40 H 1.08996 * 109.46929 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46716 * 60.00455 * 21 20 19 42 42 H 1.09002 * 109.47075 * 299.99262 * 24 22 21 43 43 H 1.08996 * 109.47407 * 60.00219 * 24 22 21 44 44 H 1.09000 * 109.46986 * 179.97438 * 24 22 21 45 45 H 1.09002 * 109.47508 * 59.99571 * 27 25 22 46 46 H 1.09000 * 109.47437 * 180.02562 * 27 25 22 47 47 H 1.09001 * 109.47109 * 299.99380 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.3429 -2.1616 -4.4119 10 1 2.4867 -0.1412 -5.1122 11 1 3.6294 -1.7581 -3.7122 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5884 -0.5215 3.5557 15 8 2.8687 -1.6984 3.4699 16 7 2.7285 0.1206 4.7324 17 6 3.2199 -0.6029 5.9076 18 1 3.9573 -1.3430 5.5967 19 6 2.0506 -1.3073 6.5986 20 6 2.5637 -2.0625 7.8265 21 6 3.2108 -1.0746 8.7992 22 6 4.3801 -0.3702 8.1082 23 1 5.1177 -1.1102 7.7976 24 6 5.0267 0.6181 9.0808 25 6 3.8669 0.3850 6.8805 26 1 3.1294 1.1249 7.1910 27 6 5.0363 1.0888 6.1891 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7082 1.1610 -3.4844 32 1 1.4495 -1.4979 1.4100 33 1 1.0870 0.6163 2.5526 34 1 2.7587 1.0462 2.1182 35 1 2.5040 1.0617 4.8011 36 1 1.3132 -0.5673 6.9096 37 1 1.5894 -2.0109 5.9055 38 1 1.7307 -2.5646 8.3185 39 1 3.3013 -2.8024 7.5159 40 1 3.5759 -1.6125 9.6740 41 1 2.4732 -0.3346 9.1098 42 1 4.2889 1.3581 9.3910 43 1 5.3923 0.0806 9.9557 44 1 5.8600 1.1197 8.5887 45 1 5.7737 0.3486 5.8785 46 1 4.6708 1.6272 5.3147 47 1 5.4977 1.7926 6.8819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:43 Heat of formation + Delta-G solvation = -67.222007 kcal Electronic energy + Delta-G solvation = -22809.470959 eV Core-core repulsion = 19604.721879 eV Total energy + Delta-G solvation = -3204.749080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.20377 -38.50526 -35.69201 -34.36198 -33.27927 -32.44837 -30.85794 -29.01180 -27.31773 -25.89759 -25.21603 -24.68665 -21.78124 -21.26365 -20.42124 -20.15846 -19.64092 -17.09528 -16.12760 -15.91952 -15.25869 -14.95900 -14.85287 -14.68733 -14.40369 -14.26397 -13.88865 -13.31249 -13.05293 -13.02628 -12.59954 -12.47122 -12.32097 -12.05910 -11.97634 -11.72383 -11.62529 -11.48398 -11.23715 -11.06615 -10.91911 -10.76809 -10.69047 -10.54570 -10.50528 -10.26394 -10.13856 -9.94085 -9.39544 -8.93939 -8.86114 -8.33762 -7.21442 -5.96313 -3.98728 3.03918 3.31054 3.36221 3.42031 3.48476 4.36317 4.44665 4.47855 4.53884 4.77724 4.90931 5.08324 5.16269 5.19305 5.23965 5.30206 5.33579 5.35499 5.41117 5.42744 5.53192 5.58183 5.68848 5.70601 5.80611 5.83216 5.89948 5.92257 5.95648 6.00416 6.02938 6.14124 6.14586 6.29165 6.66466 6.66920 6.83989 7.07635 7.30580 7.70629 7.75138 7.92239 8.27509 8.53434 8.57986 8.66082 9.09508 9.66574 11.11025 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035271 B = 0.002942 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.671251 B = 9516.565381 C = 9684.102546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.493 4.493 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.668 5.668 13 C 0.043 3.957 14 C 0.513 3.487 15 O -0.525 6.525 16 N -0.735 5.735 17 C 0.152 3.848 18 H 0.086 0.914 19 C -0.130 4.130 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.084 4.084 23 H 0.072 0.928 24 C -0.148 4.148 25 C -0.092 4.092 26 H 0.073 0.927 27 C -0.150 4.150 28 H 0.004 0.996 29 H 0.090 0.910 30 H 0.029 0.971 31 H 0.259 0.741 32 H 0.335 0.665 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 1.940 24.067 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.299 5.299 13 C -0.090 4.090 14 C 0.300 3.700 15 O -0.399 6.399 16 N -0.388 5.388 17 C 0.047 3.953 18 H 0.104 0.896 19 C -0.169 4.169 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.103 4.103 23 H 0.091 0.909 24 C -0.205 4.205 25 C -0.111 4.111 26 H 0.092 0.908 27 C -0.207 4.207 28 H 0.023 0.977 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.740 1.264 23.656 24.160 hybrid contribution -0.901 0.245 -0.615 1.118 sum 3.839 1.509 23.042 23.408 Atomic orbital electron populations 1.22459 1.00675 0.99389 1.00477 1.19218 0.89592 0.94395 0.86337 0.94801 1.21169 1.30093 1.12454 0.89457 0.91761 1.24944 0.95366 0.95215 0.99048 1.69877 1.37484 1.23289 1.23339 0.86482 0.79331 0.79210 0.82302 1.20826 1.21407 1.19807 1.60569 1.58996 1.08351 1.01995 1.21803 0.99808 0.96917 0.90489 1.21061 0.77134 0.87889 0.83891 1.90669 1.48601 1.16139 1.84508 1.46120 1.69149 1.13911 1.09648 1.20901 0.95678 0.94054 0.84634 0.89613 1.21932 0.98046 0.99771 0.97105 1.21491 1.00396 0.97968 0.95664 1.21626 0.97345 0.98341 0.97938 1.21120 0.97336 0.97350 0.94517 0.90930 1.21880 1.00683 0.99114 0.98862 1.21412 0.97757 0.97137 0.94754 0.90845 1.21891 0.97928 1.00501 1.00381 0.97702 0.89100 0.95184 0.93098 0.84724 0.93623 0.88946 0.77001 0.92035 0.91312 0.91866 0.91750 0.91979 0.91988 0.92745 0.92776 0.92247 0.92527 0.92305 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.94 37.16 0.33 -3.79 16 2 C 0.21 5.39 2.57 -68.87 -0.18 5.22 16 3 H 0.03 0.92 7.80 -51.92 -0.40 0.52 16 4 C -0.49 -14.00 8.84 -34.44 -0.30 -14.31 16 5 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.87 11.32 55.43 0.63 -25.24 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 12 N -0.67 -15.03 5.86 -109.22 -0.64 -15.67 16 13 C 0.04 0.76 5.96 -4.98 -0.03 0.73 16 14 C 0.51 8.53 7.83 -10.98 -0.09 8.44 16 15 O -0.52 -10.78 15.87 5.55 0.09 -10.69 16 16 N -0.74 -8.85 4.38 -53.81 -0.24 -9.08 16 17 C 0.15 1.67 1.90 -67.94 -0.13 1.54 16 18 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 19 C -0.13 -1.36 5.49 -26.73 -0.15 -1.51 16 20 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 21 C -0.12 -0.84 5.20 -26.73 -0.14 -0.97 16 22 C -0.08 -0.63 2.25 -90.62 -0.20 -0.83 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 24 C -0.15 -0.94 8.84 37.16 0.33 -0.61 16 25 C -0.09 -0.76 1.82 -90.62 -0.17 -0.93 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 C -0.15 -1.27 8.68 37.16 0.32 -0.95 16 28 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 29 H 0.09 2.42 6.07 -51.92 -0.32 2.10 16 30 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 32 H 0.33 7.58 8.17 -39.29 -0.32 7.26 16 33 H 0.05 0.75 7.44 -51.93 -0.39 0.36 16 34 H 0.09 1.57 8.06 -51.93 -0.42 1.15 16 35 H 0.40 3.75 8.39 -40.82 -0.34 3.41 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.53 7.44 -51.93 -0.39 0.14 16 47 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -31.05 362.92 -9.00 -40.06 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.64 Total: 5.97 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.65 Total: -7.70 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.25 Total: -49.99 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.05 -9.00 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.166 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds