Wall clock time and date at job start Tue Mar 31 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47651 * 2 1 4 4 C 1.50705 * 109.47240 * 240.00017 * 2 1 3 5 5 H 1.08002 * 120.00055 * 275.00363 * 4 2 1 6 6 C 1.37881 * 119.99914 * 94.99381 * 4 2 1 7 7 N 1.31508 * 120.00110 * 184.91638 * 6 4 2 8 8 Si 1.86799 * 119.99999 * 4.92474 * 6 4 2 9 9 H 1.48496 * 109.47629 * 84.82390 * 8 6 4 10 10 H 1.48499 * 109.47215 * 204.83029 * 8 6 4 11 11 H 1.48511 * 109.46734 * 324.82479 * 8 6 4 12 12 N 1.46896 * 109.47071 * 120.00399 * 2 1 3 13 13 C 1.46903 * 111.00119 * 274.99453 * 12 2 1 14 14 C 1.50694 * 109.47354 * 179.97438 * 13 12 2 15 15 O 1.21284 * 120.00245 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00315 * 180.02562 * 14 13 12 17 17 C 1.46503 * 119.99534 * 0.02562 * 16 14 13 18 18 C 1.46492 * 120.00326 * 180.02562 * 16 14 13 19 19 H 1.08998 * 109.47410 * 0.02562 * 18 16 14 20 20 C 1.52995 * 109.47424 * 240.00000 * 18 16 14 21 21 C 1.52993 * 109.47415 * 180.02562 * 20 18 16 22 22 C 1.52997 * 109.47165 * 60.00025 * 21 20 18 23 23 C 1.53003 * 109.47222 * 299.99915 * 22 21 20 24 24 C 1.52997 * 109.47116 * 120.00049 * 18 16 14 25 25 H 1.09000 * 109.47399 * 59.99662 * 24 18 16 26 26 C 1.53003 * 109.47222 * 299.99897 * 24 18 16 27 27 H 1.09005 * 109.47139 * 55.03992 * 1 2 3 28 28 H 1.08998 * 109.47637 * 175.04044 * 1 2 3 29 29 H 1.09002 * 109.47218 * 295.04440 * 1 2 3 30 30 H 0.96997 * 120.00376 * 180.02562 * 7 6 4 31 31 H 1.00896 * 111.00267 * 38.95000 * 12 2 1 32 32 H 1.08993 * 109.46861 * 300.00308 * 13 12 2 33 33 H 1.09000 * 109.46443 * 60.00070 * 13 12 2 34 34 H 1.09001 * 109.47261 * 89.99958 * 17 16 14 35 35 H 1.08999 * 109.46629 * 210.00172 * 17 16 14 36 36 H 1.08997 * 109.46991 * 329.99986 * 17 16 14 37 37 H 1.09001 * 109.47337 * 300.00102 * 20 18 16 38 38 H 1.09000 * 109.46844 * 59.99795 * 20 18 16 39 39 H 1.09000 * 109.47223 * 299.99597 * 21 20 18 40 40 H 1.09002 * 109.47353 * 179.97438 * 21 20 18 41 41 H 1.09005 * 109.47437 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.47466 * 60.00207 * 22 21 20 43 43 H 1.09000 * 109.46741 * 300.00168 * 23 22 21 44 44 H 1.09000 * 109.47133 * 180.02562 * 23 22 21 45 45 H 1.09005 * 109.46782 * 59.99760 * 26 24 18 46 46 H 1.08997 * 109.47627 * 179.97438 * 26 24 18 47 47 H 1.09001 * 109.47482 * 300.00101 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3601 0.0121 -2.3581 7 7 2.7058 -0.6131 -3.4623 8 14 2.3135 1.8791 -2.3175 9 1 3.5989 2.3949 -1.7822 10 1 2.1056 2.3991 -3.6928 11 1 1.1984 2.3274 -1.4450 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5873 -0.5220 3.5559 15 8 2.8676 -1.6989 3.4702 16 7 2.7274 0.1200 4.7327 17 6 2.3883 1.5414 4.8365 18 6 3.2187 -0.6036 5.9080 19 1 3.4166 -1.6412 5.6393 20 6 2.1634 -0.5553 7.0147 21 6 2.6767 -1.3104 8.2422 22 6 3.9677 -0.6572 8.7398 23 6 5.0231 -0.7055 7.6331 24 6 4.5098 0.0491 6.4057 25 1 4.3123 1.0868 6.6743 26 6 5.5653 0.0007 5.2990 27 1 -0.3634 0.5889 -0.8423 28 1 -0.3634 -1.0238 -0.0888 29 1 -0.3634 0.4350 0.9311 30 1 2.9368 -0.1048 -4.2555 31 1 1.4495 -1.4979 1.4100 32 1 2.7589 1.0460 2.1182 33 1 1.0871 0.6162 2.5525 34 1 1.3390 1.6454 5.1127 35 1 3.0125 2.0091 5.5979 36 1 2.5611 2.0272 3.8762 37 1 1.9658 0.4825 7.2833 38 1 1.2435 -1.0202 6.6600 39 1 2.8745 -2.3482 7.9740 40 1 1.9250 -1.2756 9.0309 41 1 4.3337 -1.1954 9.6141 42 1 3.7698 0.3806 9.0081 43 1 5.2209 -1.7433 7.3649 44 1 5.9430 -0.2406 7.9878 45 1 5.1996 0.5391 4.4246 46 1 6.4850 0.4660 5.6534 47 1 5.7629 -1.0370 5.0304 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:20 Heat of formation + Delta-G solvation = -51.914148 kcal Electronic energy + Delta-G solvation = -23364.728714 eV Core-core repulsion = 20160.643432 eV Total energy + Delta-G solvation = -3204.085282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35695 -38.31445 -35.86781 -34.97701 -32.71323 -32.34990 -30.66074 -29.46659 -27.04760 -26.50001 -25.39541 -24.89081 -22.51209 -21.48483 -20.03933 -19.87995 -19.06948 -17.08764 -16.77395 -16.18912 -15.71885 -14.89082 -14.76677 -14.48959 -14.38657 -14.16029 -13.68098 -13.42089 -13.15919 -12.99362 -12.66970 -12.52998 -12.46468 -12.38903 -12.20455 -12.08344 -11.84675 -11.72045 -11.34806 -11.27441 -11.10029 -11.04683 -10.71931 -10.68915 -10.51002 -10.42915 -10.17331 -9.76136 -9.42370 -9.09240 -8.54782 -8.50005 -7.36323 -6.02149 -3.99208 2.92537 3.02400 3.28728 3.34767 3.36858 4.36735 4.43356 4.51420 4.61338 4.76335 4.91572 4.92373 5.02207 5.09961 5.19155 5.22950 5.23147 5.28423 5.36499 5.45338 5.46935 5.58140 5.61819 5.73248 5.74267 5.79468 5.80274 5.80858 5.89859 5.92888 5.97857 6.09357 6.17852 6.21937 6.30856 6.35144 6.58183 6.62303 6.75877 7.14107 7.44713 7.70702 7.95212 8.35427 8.50246 8.69934 9.07860 9.59794 11.11694 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030033 B = 0.003627 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.086373 B = 7717.556847 C = 7861.181594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.181 3.819 3 H 0.036 0.964 4 C -0.490 4.490 5 H 0.078 0.922 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.268 1.268 12 N -0.658 5.658 13 C 0.041 3.959 14 C 0.515 3.485 15 O -0.520 6.520 16 N -0.619 5.619 17 C 0.077 3.923 18 C 0.145 3.855 19 H 0.101 0.899 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.098 4.098 25 H 0.070 0.930 26 C -0.145 4.145 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.019 0.981 30 H 0.263 0.737 31 H 0.338 0.662 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 5.770 25.135 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.073 3.927 3 H 0.054 0.946 4 C -0.529 4.529 5 H 0.096 0.904 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.290 5.290 13 C -0.092 4.092 14 C 0.303 3.697 15 O -0.394 6.394 16 N -0.354 5.354 17 C -0.066 4.066 18 C 0.042 3.958 19 H 0.119 0.881 20 C -0.165 4.165 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.151 4.151 24 C -0.118 4.118 25 H 0.088 0.912 26 C -0.202 4.202 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.274 5.234 24.682 25.263 hybrid contribution -0.979 1.370 0.124 1.688 sum 0.295 6.604 24.806 25.672 Atomic orbital electron populations 1.22664 1.00916 1.00993 0.98563 1.19694 0.89428 0.94566 0.88992 0.94616 1.20862 1.42544 0.95889 0.93561 0.90414 1.24983 0.94835 0.98000 0.95406 1.69888 1.46658 1.35600 1.01692 0.86907 0.78802 0.86879 0.77081 1.20176 1.21505 1.19347 1.60707 1.58849 1.08123 1.01332 1.21909 0.99657 0.96988 0.90670 1.20988 0.77258 0.87700 0.83710 1.90673 1.48816 1.16080 1.83880 1.47929 1.67014 1.10659 1.09794 1.21744 1.00347 0.81464 1.03069 1.21059 0.92306 0.98044 0.84423 0.88146 1.21867 0.98589 1.00891 0.95108 1.21498 0.97142 0.99818 0.97041 1.21560 0.95404 1.00869 0.97919 1.21568 0.98059 1.00924 0.94503 1.21441 0.95094 0.99762 0.95485 0.91174 1.21769 0.97744 1.02446 0.98239 0.93064 0.93063 0.96243 0.92677 0.84387 0.88998 0.93654 0.92862 0.91211 0.90834 0.91835 0.91676 0.91684 0.91845 0.91974 0.92071 0.91644 0.91755 0.92433 0.92955 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.60 9.16 37.15 0.34 -3.26 16 2 C 0.18 4.28 2.23 -68.87 -0.15 4.13 16 3 H 0.04 0.85 4.95 -51.93 -0.26 0.59 16 4 C -0.49 -14.05 9.19 -34.44 -0.32 -14.36 16 5 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 8 Si 0.88 21.43 26.99 -169.99 -4.59 16.85 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.17 6.82 56.52 0.39 -5.78 16 12 N -0.66 -14.35 5.86 -109.23 -0.64 -14.99 16 13 C 0.04 0.70 4.52 -4.98 -0.02 0.67 16 14 C 0.52 8.57 7.71 -10.99 -0.08 8.48 16 15 O -0.52 -10.66 15.53 5.55 0.09 -10.57 16 16 N -0.62 -7.69 2.00 -173.94 -0.35 -8.04 16 17 C 0.08 0.71 9.30 59.85 0.56 1.26 16 18 C 0.15 1.63 1.97 -67.94 -0.13 1.50 16 19 H 0.10 1.41 6.90 -51.93 -0.36 1.05 16 20 C -0.13 -1.15 5.20 -26.74 -0.14 -1.29 16 21 C -0.12 -0.91 5.92 -26.74 -0.16 -1.07 16 22 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 23 C -0.11 -0.91 5.20 -26.75 -0.14 -1.05 16 24 C -0.10 -0.93 2.09 -90.65 -0.19 -1.12 16 25 H 0.07 0.60 6.66 -51.93 -0.35 0.26 16 26 C -0.14 -1.61 9.04 37.16 0.34 -1.27 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.02 0.34 7.35 -51.93 -0.38 -0.04 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.34 7.32 8.18 -39.29 -0.32 6.99 16 32 H 0.09 1.51 7.32 -51.93 -0.38 1.13 16 33 H 0.05 0.69 7.33 -51.93 -0.38 0.31 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.52 6.43 -51.93 -0.33 0.18 16 36 H 0.07 0.67 6.44 -51.93 -0.33 0.34 16 37 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.73 7.60 -51.93 -0.39 0.33 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -32.58 359.19 -8.20 -40.77 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.53 Total: 4.14 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -0.36 Total: -6.47 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.21 Total: -50.13 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.59 Total: 16.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.58 -8.20 -40.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.140 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds