Wall clock time and date at job start Tue Mar 31 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47184 * 2 1 4 4 C 1.50706 * 109.47099 * 239.99987 * 2 1 3 5 5 H 1.08002 * 119.99713 * 239.99989 * 4 2 1 6 6 C 1.37871 * 119.99744 * 60.00234 * 4 2 1 7 7 N 1.31514 * 120.00234 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99887 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47209 * 89.99964 * 8 6 4 10 10 H 1.48504 * 109.46944 * 210.00441 * 8 6 4 11 11 H 1.48501 * 109.46786 * 329.99832 * 8 6 4 12 12 N 1.46898 * 109.46635 * 120.00318 * 2 1 3 13 13 C 1.46905 * 110.99984 * 274.99839 * 12 2 1 14 14 C 1.50696 * 109.47165 * 180.02562 * 13 12 2 15 15 O 1.21280 * 119.99901 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00035 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00065 * 1.24993 * 16 14 13 18 18 C 1.46499 * 120.00100 * 181.24579 * 16 14 13 19 19 H 1.08993 * 109.47511 * 50.22282 * 18 16 14 20 20 C 1.53008 * 109.47141 * 170.22443 * 18 16 14 21 21 C 1.53001 * 109.46894 * 60.00093 * 20 18 16 22 22 C 1.53001 * 109.47345 * 60.00210 * 21 20 18 23 23 C 1.53001 * 109.46855 * 299.99470 * 22 21 20 24 24 C 1.53001 * 109.47249 * 290.22326 * 18 16 14 25 25 H 1.09003 * 109.47646 * 180.02562 * 24 18 16 26 26 C 1.53002 * 109.47191 * 59.99549 * 24 18 16 27 27 H 1.09005 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47210 * 300.00135 * 1 2 3 29 29 H 1.09007 * 109.46648 * 60.00090 * 1 2 3 30 30 H 0.96998 * 120.00276 * 179.97438 * 7 6 4 31 31 H 1.00903 * 110.99897 * 151.05020 * 12 2 1 32 32 H 1.08995 * 109.46977 * 60.00207 * 13 12 2 33 33 H 1.08998 * 109.46954 * 300.00257 * 13 12 2 34 34 H 1.08999 * 109.47915 * 91.14851 * 17 16 14 35 35 H 1.09000 * 109.47484 * 211.15870 * 17 16 14 36 36 H 1.09010 * 109.46809 * 331.15007 * 17 16 14 37 37 H 1.08994 * 109.46840 * 180.02562 * 20 18 16 38 38 H 1.08995 * 109.46707 * 299.99993 * 20 18 16 39 39 H 1.09003 * 109.46865 * 299.99590 * 21 20 18 40 40 H 1.09002 * 109.46539 * 180.02562 * 21 20 18 41 41 H 1.09000 * 109.46445 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.46993 * 60.00096 * 22 21 20 43 43 H 1.09003 * 109.47377 * 300.00040 * 23 22 21 44 44 H 1.09000 * 109.46885 * 179.97438 * 23 22 21 45 45 H 1.09007 * 109.46689 * 51.37774 * 26 24 18 46 46 H 1.08998 * 109.46806 * 171.37189 * 26 24 18 47 47 H 1.08988 * 109.47488 * 291.37936 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6994 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1195 -4.0080 9 1 1.3449 -2.1615 -4.4124 10 1 2.4875 -0.1400 -5.1120 11 1 3.6310 -1.7565 -3.7119 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2225 2.3470 14 6 2.5883 -0.5217 3.5558 15 8 2.8685 -1.6985 3.4699 16 7 2.7294 0.1206 4.7322 17 6 2.3651 1.5352 4.8427 18 6 3.2470 -0.5959 5.9005 19 1 4.1660 -1.1159 5.6301 20 6 3.5373 0.4020 7.0234 21 6 2.2473 1.1319 7.4031 22 6 1.2077 0.1156 7.8800 23 6 0.9174 -0.8822 6.7571 24 6 2.2075 -1.6121 6.3774 25 1 2.5924 -2.1450 7.2469 26 6 1.9171 -2.6100 5.2545 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 0.7089 1.1613 -3.4843 31 1 2.9173 -1.1206 1.0287 32 1 1.0871 0.6162 2.5525 33 1 2.7588 1.0461 2.1183 34 1 1.3228 1.6191 5.1506 35 1 3.0027 2.0179 5.5834 36 1 2.4987 2.0214 3.8763 37 1 3.9228 -0.1311 7.8924 38 1 4.2779 1.1259 6.6836 39 1 1.8622 1.6650 6.5338 40 1 2.4543 1.8431 8.2028 41 1 0.2886 0.6357 8.1500 42 1 1.5929 -0.4174 8.7493 43 1 0.5323 -0.3490 5.8878 44 1 0.1772 -1.6064 7.0970 45 1 2.8557 -3.0180 4.8793 46 1 1.2970 -3.4196 5.6393 47 1 1.3919 -2.1033 4.4450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:22 Heat of formation + Delta-G solvation = -1.711591 kcal Electronic energy + Delta-G solvation = -23931.441371 eV Core-core repulsion = 20729.533036 eV Total energy + Delta-G solvation = -3201.908335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91768 -38.05871 -35.56083 -34.62053 -32.79890 -32.37032 -30.59853 -28.88317 -27.53711 -25.90089 -25.38221 -24.68780 -22.27555 -21.45186 -20.36541 -19.62853 -18.58146 -17.01799 -16.56532 -16.33925 -15.45604 -14.92767 -14.75558 -14.60744 -14.23589 -13.94691 -13.63278 -13.39430 -13.05406 -12.91660 -12.62353 -12.34620 -12.27793 -12.07919 -11.97575 -11.72734 -11.42904 -11.22885 -11.19202 -10.91397 -10.71185 -10.63074 -10.32732 -10.31028 -10.13834 -10.08974 -10.02978 -9.99895 -9.03177 -8.80733 -8.46038 -8.25993 -7.25363 -6.02047 -4.07786 3.02861 3.13114 3.32142 3.38164 3.42393 4.41819 4.50646 4.57731 4.64238 4.92929 5.02972 5.09588 5.11971 5.28744 5.31532 5.34564 5.35640 5.38686 5.44827 5.48845 5.58043 5.61140 5.82493 5.84010 5.89078 5.93648 5.95822 6.03418 6.07906 6.12262 6.23516 6.33498 6.45034 6.75873 6.85099 6.91837 7.12205 7.20578 7.44305 7.59860 7.80519 7.89396 8.27535 8.39394 8.56675 8.69834 9.02859 9.58185 11.04456 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032951 B = 0.003693 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.537803 B = 7580.425755 C = 7784.601428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.672 5.672 13 C 0.046 3.954 14 C 0.503 3.497 15 O -0.505 6.505 16 N -0.614 5.614 17 C 0.068 3.932 18 C 0.156 3.844 19 H 0.075 0.925 20 C -0.124 4.124 21 C -0.163 4.163 22 C -0.116 4.116 23 C -0.113 4.113 24 C -0.099 4.099 25 H 0.068 0.932 26 C -0.138 4.138 27 H 0.032 0.968 28 H 0.002 0.998 29 H 0.081 0.919 30 H 0.261 0.739 31 H 0.340 0.660 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.026 0.974 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.549 3.041 20.971 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.305 5.305 13 C -0.087 4.087 14 C 0.292 3.708 15 O -0.379 6.379 16 N -0.351 5.351 17 C -0.075 4.075 18 C 0.052 3.948 19 H 0.093 0.907 20 C -0.162 4.162 21 C -0.200 4.200 22 C -0.154 4.154 23 C -0.150 4.150 24 C -0.119 4.119 25 H 0.086 0.914 26 C -0.195 4.195 27 H 0.052 0.948 28 H 0.021 0.979 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.006 2.268 20.927 21.145 hybrid contribution 0.947 0.218 -0.913 1.333 sum 2.953 2.486 20.014 20.383 Atomic orbital electron populations 1.21726 0.97810 0.99494 0.99241 1.19144 0.92675 0.92234 0.85436 0.98155 1.21262 1.31395 1.12529 0.90318 0.92069 1.24904 0.95047 0.94987 0.99028 1.69893 1.36754 1.22931 1.23456 0.86506 0.79300 0.79313 0.82343 1.20592 1.21308 1.19890 1.60507 1.33330 1.31744 1.04899 1.21836 1.00833 0.94877 0.91112 1.20876 0.78362 0.87553 0.84036 1.90756 1.48224 1.15171 1.83772 1.47856 1.66387 1.10926 1.09885 1.22254 1.00175 0.82207 1.02881 1.21003 0.96446 0.92428 0.84873 0.90698 1.21771 0.97998 0.98424 0.97976 1.22563 0.95581 0.98546 1.03272 1.21501 0.98621 0.97122 0.98119 1.21564 0.97210 0.97843 0.98397 1.21570 0.95435 0.96039 0.98808 0.91371 1.22363 1.02661 0.97483 0.97004 0.94838 0.97857 0.90028 0.92950 0.84168 0.89380 0.93678 0.92126 0.89989 0.91171 0.90786 0.91428 0.88059 0.92305 0.92317 0.92545 0.91761 0.92404 0.90909 0.95544 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.41 2.60 -68.86 -0.18 5.23 16 3 H 0.00 0.02 7.80 -51.93 -0.41 -0.38 16 4 C -0.52 -14.39 8.59 -34.44 -0.30 -14.69 16 5 H 0.06 1.71 7.62 -52.49 -0.40 1.31 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 N -0.67 -14.98 5.93 -109.22 -0.65 -15.63 16 13 C 0.05 0.83 4.48 -4.97 -0.02 0.80 16 14 C 0.50 8.24 6.34 -10.99 -0.07 8.17 16 15 O -0.50 -9.66 11.06 5.56 0.06 -9.60 16 16 N -0.61 -7.63 2.23 -177.11 -0.40 -8.03 16 17 C 0.07 0.64 7.92 59.85 0.47 1.11 16 18 C 0.16 1.76 2.60 -67.93 -0.18 1.59 16 19 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 20 C -0.12 -1.03 4.95 -26.73 -0.13 -1.16 16 21 C -0.16 -1.25 5.13 -26.73 -0.14 -1.39 16 22 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 23 C -0.11 -1.20 5.04 -26.73 -0.13 -1.33 16 24 C -0.10 -1.16 2.54 -90.61 -0.23 -1.39 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 C -0.14 -2.06 7.28 37.16 0.27 -1.79 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.00 0.05 7.45 -51.93 -0.39 -0.33 16 29 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.34 7.80 7.92 -39.29 -0.31 7.49 16 32 H 0.09 1.52 7.39 -51.93 -0.38 1.13 16 33 H 0.05 0.77 7.36 -51.93 -0.38 0.39 16 34 H 0.06 0.53 6.32 -51.93 -0.33 0.20 16 35 H 0.08 0.61 4.84 -51.93 -0.25 0.36 16 36 H 0.07 0.68 6.40 -51.92 -0.33 0.34 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.52 7.34 -51.93 -0.38 0.14 16 39 H 0.10 0.77 3.02 -55.89 -0.17 0.60 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.77 6.92 -51.93 -0.36 0.41 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 1.20 6.65 -51.92 -0.35 0.86 16 46 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 1.29 5.31 -51.94 -0.28 1.01 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -29.85 339.18 -8.77 -38.62 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.96 Total: 4.95 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.54 Total: -7.13 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.42 Total: -48.44 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.06 Total: -9.60 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.85 -8.77 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.909 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds