Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47192 * 2 1 4 4 C 1.50698 * 109.47107 * 240.00328 * 2 1 3 5 5 H 1.07998 * 120.00415 * 239.99580 * 4 2 1 6 6 C 1.37882 * 119.99805 * 60.00124 * 4 2 1 7 7 N 1.31512 * 120.00299 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99789 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47363 * 59.99889 * 8 6 4 10 10 H 1.48500 * 109.46762 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46907 * 299.99437 * 8 6 4 12 12 N 1.46900 * 109.47267 * 120.00522 * 2 1 3 13 13 C 1.46900 * 110.99898 * 274.99976 * 12 2 1 14 14 C 1.50696 * 109.47040 * 180.02562 * 13 12 2 15 15 O 1.21275 * 120.00381 * 359.97438 * 14 13 12 16 16 N 1.34788 * 120.00002 * 180.02562 * 14 13 12 17 17 C 1.46497 * 119.99791 * 359.97438 * 16 14 13 18 18 C 1.46496 * 119.99828 * 179.97438 * 16 14 13 19 19 H 1.08996 * 109.47565 * 0.02562 * 18 16 14 20 20 C 1.52997 * 109.46953 * 120.00061 * 18 16 14 21 21 C 1.53006 * 109.47127 * 179.97438 * 20 18 16 22 22 C 1.52999 * 109.46626 * 299.99539 * 21 20 18 23 23 C 1.52997 * 109.46991 * 60.00378 * 22 21 20 24 24 C 1.52996 * 109.47131 * 299.99311 * 23 22 21 25 25 H 1.08996 * 109.47452 * 300.00000 * 24 23 22 26 26 C 1.52997 * 109.47131 * 179.97438 * 24 23 22 27 27 H 1.09000 * 109.47146 * 299.99015 * 1 2 3 28 28 H 1.08994 * 109.47462 * 59.99910 * 1 2 3 29 29 H 1.09010 * 109.47251 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00468 * 180.02562 * 7 6 4 31 31 H 1.00898 * 111.00407 * 38.95214 * 12 2 1 32 32 H 1.08995 * 109.47209 * 59.99931 * 13 12 2 33 33 H 1.09004 * 109.46863 * 300.00007 * 13 12 2 34 34 H 1.09000 * 109.47030 * 270.00411 * 17 16 14 35 35 H 1.09002 * 109.47236 * 29.99701 * 17 16 14 36 36 H 1.08999 * 109.47125 * 150.00453 * 17 16 14 37 37 H 1.09001 * 109.47502 * 60.00124 * 20 18 16 38 38 H 1.09001 * 109.47289 * 299.99920 * 20 18 16 39 39 H 1.08993 * 109.46955 * 60.00011 * 21 20 18 40 40 H 1.09000 * 109.47050 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.46719 * 180.02562 * 22 21 20 42 42 H 1.08993 * 109.47839 * 299.99931 * 22 21 20 43 43 H 1.09001 * 109.47289 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47611 * 59.99933 * 23 22 21 45 45 H 1.09000 * 109.47611 * 300.00622 * 26 24 23 46 46 H 1.09001 * 109.47289 * 60.00050 * 26 24 23 47 47 H 1.09002 * 109.47153 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2391 -2.4827 7 7 0.9427 0.8299 -2.6034 8 14 2.3212 -1.1201 -4.0080 9 1 1.8257 -2.5199 -4.0079 10 1 1.8268 -0.4194 -5.2204 11 1 3.8063 -1.1205 -4.0083 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2224 2.3469 14 6 2.5885 -0.5218 3.5556 15 8 2.8688 -1.6986 3.4698 16 7 2.7287 0.1203 4.7324 17 6 2.3896 1.5417 4.8362 18 6 3.2201 -0.6034 5.9076 19 1 3.4181 -1.6410 5.6389 20 6 4.5114 0.0493 6.4052 21 6 5.0243 -0.7061 7.6329 22 6 3.9689 -0.6570 8.7395 23 6 2.6776 -1.3097 8.2419 24 6 2.1647 -0.5544 7.0142 25 1 1.9673 0.4835 7.2824 26 6 0.8738 -1.2074 6.5162 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 0.7080 1.1611 -3.4843 31 1 1.4496 -1.4980 1.4100 32 1 1.0871 0.6161 2.5525 33 1 2.7588 1.0460 2.1182 34 1 3.2706 2.1427 4.6113 35 1 1.5971 1.7789 4.1264 36 1 2.0488 1.7609 5.8481 37 1 4.3139 1.0870 6.6739 38 1 5.2632 0.0149 5.6166 39 1 5.2217 -1.7439 7.3647 40 1 5.9445 -0.2414 7.9871 41 1 4.3345 -1.1948 9.6143 42 1 3.7715 0.3808 9.0077 43 1 1.9258 -1.2752 9.0303 44 1 2.8750 -2.3476 7.9737 45 1 1.0716 -2.2452 6.2480 46 1 0.1217 -1.1730 7.3044 47 1 0.5086 -0.6696 5.6413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = -53.774534 kcal Electronic energy + Delta-G solvation = -23270.085270 eV Core-core repulsion = 20065.919316 eV Total energy + Delta-G solvation = -3204.165954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30630 -38.25458 -35.66775 -34.91914 -32.70974 -32.43931 -30.45560 -28.87296 -27.00088 -26.41014 -25.25255 -24.77602 -22.46828 -21.46623 -20.18601 -19.84265 -18.98517 -16.88161 -16.54729 -15.84358 -15.63150 -14.85447 -14.75115 -14.59987 -14.35181 -14.01955 -13.71622 -13.23438 -13.08175 -12.97266 -12.57826 -12.50078 -12.43914 -12.28979 -12.06609 -11.74609 -11.60266 -11.48707 -11.31766 -11.08412 -10.89140 -10.79313 -10.68061 -10.55251 -10.46528 -10.39779 -10.12747 -9.93350 -9.37324 -8.94526 -8.48836 -8.33171 -7.21161 -5.96111 -3.98588 2.99466 3.09035 3.38664 3.41337 3.46353 4.39433 4.47748 4.53432 4.64119 4.81992 4.94281 4.99803 5.09745 5.21202 5.25303 5.27004 5.30261 5.35553 5.41572 5.45650 5.49239 5.60114 5.66366 5.74489 5.81278 5.82424 5.89984 5.92174 5.94347 5.95158 5.98874 6.11856 6.17011 6.29988 6.65695 6.68811 6.83868 7.07520 7.29372 7.55257 7.75053 7.91725 8.27226 8.49960 8.56849 8.65169 9.09265 9.66630 11.11186 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034475 B = 0.003277 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.984751 B = 8543.062680 C = 8744.622115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.213 3.787 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.668 5.668 13 C 0.046 3.954 14 C 0.515 3.485 15 O -0.524 6.524 16 N -0.619 5.619 17 C 0.077 3.923 18 C 0.145 3.855 19 H 0.100 0.900 20 C -0.127 4.127 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.099 4.099 25 H 0.071 0.929 26 C -0.144 4.144 27 H 0.003 0.997 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.335 0.665 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 2.050 23.021 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.300 5.300 13 C -0.087 4.087 14 C 0.304 3.696 15 O -0.399 6.399 16 N -0.354 5.354 17 C -0.066 4.066 18 C 0.042 3.958 19 H 0.118 0.882 20 C -0.165 4.165 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.118 4.118 25 H 0.089 0.911 26 C -0.201 4.201 27 H 0.023 0.977 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.198 1.608 22.619 22.901 hybrid contribution -0.731 -0.043 -0.624 0.962 sum 2.468 1.565 21.995 22.188 Atomic orbital electron populations 1.22454 1.00664 0.99380 1.00441 1.19208 0.89588 0.94373 0.86310 0.94825 1.21134 1.30170 1.12503 0.89470 0.91810 1.24940 0.95334 0.95222 0.99025 1.69866 1.37392 1.23286 1.23447 0.86539 0.79217 0.79638 0.81867 1.20321 1.21497 1.20261 1.60572 1.58994 1.08376 1.02037 1.21828 0.99626 0.96872 0.90358 1.21079 0.77141 0.87637 0.83770 1.90652 1.49108 1.16147 1.83959 1.47932 1.67051 1.10677 1.09719 1.21749 1.00867 0.81334 1.02676 1.21051 0.92304 0.98104 0.84390 0.88210 1.21875 0.97185 0.99684 0.97788 1.21500 0.98078 1.00941 0.94982 1.21554 0.95394 1.00906 0.97885 1.21568 0.96943 0.99727 0.96767 1.21449 0.95425 1.00058 0.94863 0.91108 1.21762 0.96397 1.01138 1.00814 0.97750 0.89093 0.95190 0.93039 0.84741 0.93648 0.88977 0.92699 0.90795 0.91345 0.91811 0.91506 0.91721 0.91825 0.92007 0.92057 0.91817 0.91696 0.92535 0.92970 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.15 0.33 -3.77 16 2 C 0.21 5.42 2.57 -68.87 -0.18 5.24 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -14.05 8.84 -34.44 -0.30 -14.35 16 5 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 6 C 0.05 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.85 11.32 55.43 0.63 -25.22 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.67 -15.15 5.86 -109.23 -0.64 -15.79 16 13 C 0.05 0.83 4.52 -4.98 -0.02 0.81 16 14 C 0.52 8.84 7.71 -10.98 -0.08 8.75 16 15 O -0.52 -10.92 15.53 5.56 0.09 -10.83 16 16 N -0.62 -7.96 1.99 -173.94 -0.35 -8.31 16 17 C 0.08 0.75 9.30 59.85 0.56 1.31 16 18 C 0.15 1.67 1.97 -67.93 -0.13 1.54 16 19 H 0.10 1.43 6.90 -51.93 -0.36 1.07 16 20 C -0.13 -1.23 5.20 -26.73 -0.14 -1.37 16 21 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 22 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 23 C -0.11 -0.90 5.20 -26.73 -0.14 -1.04 16 24 C -0.10 -0.93 2.09 -90.62 -0.19 -1.12 16 25 H 0.07 0.61 6.66 -51.93 -0.35 0.27 16 26 C -0.14 -1.52 9.03 37.16 0.34 -1.19 16 27 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 29 H 0.03 0.70 8.13 -51.92 -0.42 0.28 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.33 7.62 8.17 -39.29 -0.32 7.30 16 32 H 0.05 0.76 6.69 -51.93 -0.35 0.41 16 33 H 0.09 1.62 8.02 -51.93 -0.42 1.20 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.72 6.44 -51.93 -0.33 0.38 16 36 H 0.07 0.53 6.42 -51.93 -0.33 0.20 16 37 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.67 7.60 -51.93 -0.39 0.27 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -30.98 359.66 -8.80 -39.79 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.55 Total: 3.90 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.38 Total: -5.87 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.36 Total: -49.32 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.98 -8.80 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.988 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds