Wall clock time and date at job start Tue Mar 31 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47222 * 2 1 4 4 C 1.50694 * 109.47348 * 239.99646 * 2 1 3 5 5 H 1.07996 * 120.00278 * 239.99807 * 4 2 1 6 6 C 1.37883 * 120.00144 * 60.00001 * 4 2 1 7 7 N 1.31514 * 119.99716 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00278 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46780 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47245 * 120.00017 * 8 6 4 11 11 H 1.48495 * 109.46931 * 240.00245 * 8 6 4 12 12 N 1.46898 * 109.47153 * 119.99748 * 2 1 3 13 13 C 1.46909 * 111.00076 * 275.00226 * 12 2 1 14 14 C 1.50690 * 109.47230 * 180.02562 * 13 12 2 15 15 O 1.21286 * 120.00364 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00174 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99844 * 6.24261 * 16 14 13 18 18 C 1.46503 * 119.99959 * 186.25042 * 16 14 13 19 19 H 1.09003 * 109.46978 * 306.60171 * 18 16 14 20 20 C 1.53002 * 109.46572 * 186.61181 * 18 16 14 21 21 C 1.53000 * 109.46949 * 299.99357 * 20 18 16 22 22 C 1.53008 * 109.47243 * 300.00372 * 21 20 18 23 23 C 1.53001 * 109.46936 * 60.00056 * 22 21 20 24 24 C 1.52995 * 109.47394 * 66.60788 * 18 16 14 25 25 H 1.08999 * 109.46968 * 179.97438 * 24 18 16 26 26 C 1.53001 * 109.47066 * 299.99896 * 24 18 16 27 27 H 1.08996 * 109.47183 * 300.00585 * 1 2 3 28 28 H 1.09001 * 109.46679 * 60.00106 * 1 2 3 29 29 H 1.08998 * 109.46910 * 180.02562 * 1 2 3 30 30 H 0.96994 * 120.00130 * 180.02562 * 7 6 4 31 31 H 1.00901 * 110.99906 * 38.95463 * 12 2 1 32 32 H 1.09000 * 109.47047 * 59.99809 * 13 12 2 33 33 H 1.09006 * 109.46924 * 300.00054 * 13 12 2 34 34 H 1.09007 * 109.46994 * 272.37788 * 17 16 14 35 35 H 1.09000 * 109.47115 * 32.37231 * 17 16 14 36 36 H 1.08994 * 109.47053 * 152.38040 * 17 16 14 37 37 H 1.08991 * 109.47638 * 59.99738 * 20 18 16 38 38 H 1.08999 * 109.46843 * 180.02562 * 20 18 16 39 39 H 1.08995 * 109.47424 * 60.00393 * 21 20 18 40 40 H 1.09001 * 109.47471 * 180.02562 * 21 20 18 41 41 H 1.08990 * 109.47050 * 299.99845 * 22 21 20 42 42 H 1.09000 * 109.47075 * 180.02562 * 22 21 20 43 43 H 1.08995 * 109.46721 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.46868 * 59.99789 * 23 22 21 45 45 H 1.09003 * 109.47105 * 65.83998 * 26 24 18 46 46 H 1.09001 * 109.46857 * 185.83586 * 26 24 18 47 47 H 1.08998 * 109.46965 * 305.83958 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0079 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 7 2.0197 -0.6924 1.1994 13 6 2.0824 0.2227 2.3469 14 6 2.5885 -0.5213 3.5557 15 8 2.8688 -1.6982 3.4701 16 7 2.7286 0.1209 4.7324 17 6 2.2618 1.5024 4.8731 18 6 3.3478 -0.5627 5.8707 19 1 2.8366 -1.5089 6.0482 20 6 3.2365 0.3185 7.1166 21 6 3.9540 1.6467 6.8676 22 6 5.4292 1.3800 6.5615 23 6 5.5403 0.4989 5.3156 24 6 4.8229 -0.8293 5.5646 25 1 5.2837 -1.3375 6.4117 26 6 4.9341 -1.7104 4.3187 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7090 1.1612 -3.4844 31 1 1.4496 -1.4979 1.4101 32 1 1.0870 0.6164 2.5525 33 1 2.7588 1.0464 2.1182 34 1 3.0550 2.1864 4.5712 35 1 1.3882 1.6570 4.2399 36 1 1.9951 1.6916 5.9128 37 1 2.1857 0.5084 7.3347 38 1 3.6976 -0.1899 7.9634 39 1 3.4934 2.1552 6.0207 40 1 3.8751 2.2743 7.7552 41 1 5.8898 0.8715 7.4084 42 1 5.9404 2.3263 6.3845 43 1 6.5912 0.3086 5.0978 44 1 5.0796 1.0075 4.4687 45 1 4.5677 -1.1612 3.4514 46 1 5.9767 -1.9859 4.1604 47 1 4.3370 -2.6118 4.4568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:28 Heat of formation + Delta-G solvation = -2.233521 kcal Electronic energy + Delta-G solvation = -23963.196325 eV Core-core repulsion = 20761.265357 eV Total energy + Delta-G solvation = -3201.930968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.92986 -38.06752 -35.65651 -34.63233 -32.77150 -32.35848 -30.59651 -28.87523 -27.47707 -25.80299 -25.22878 -24.76454 -22.25621 -21.43969 -20.38696 -20.02982 -18.56687 -16.91600 -16.56085 -16.25551 -15.50275 -14.92273 -14.70060 -14.54330 -14.27608 -14.04436 -13.53964 -13.34089 -13.06173 -12.88025 -12.62404 -12.34564 -12.28445 -12.03032 -11.92224 -11.60132 -11.57644 -11.39791 -11.18495 -10.92729 -10.77182 -10.51902 -10.50231 -10.35089 -10.14295 -10.06805 -10.04201 -9.90612 -9.21422 -8.89846 -8.34070 -8.22729 -7.20421 -5.96413 -3.98581 3.00708 3.13384 3.34828 3.42388 3.49549 4.46588 4.51183 4.57869 4.64358 4.93170 5.03379 5.09678 5.11789 5.31466 5.34774 5.35577 5.36053 5.39230 5.42741 5.48886 5.58922 5.60321 5.82962 5.84062 5.90072 5.93344 5.95582 6.03964 6.09091 6.12909 6.25164 6.34634 6.45831 6.66426 6.75729 6.84044 6.92137 7.07741 7.29928 7.58298 7.75003 7.92205 8.27325 8.51900 8.57358 8.66276 9.09963 9.66767 11.10959 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028251 B = 0.003867 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.881381 B = 7239.141302 C = 7544.043685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.491 4.491 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.667 5.667 13 C 0.046 3.954 14 C 0.504 3.496 15 O -0.504 6.504 16 N -0.615 5.615 17 C 0.069 3.931 18 C 0.156 3.844 19 H 0.074 0.926 20 C -0.124 4.124 21 C -0.158 4.158 22 C -0.116 4.116 23 C -0.113 4.113 24 C -0.099 4.099 25 H 0.068 0.932 26 C -0.144 4.144 27 H 0.003 0.997 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.258 0.742 31 H 0.335 0.665 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.028 0.972 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 3.593 20.596 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.051 0.949 4 C -0.530 4.530 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.299 5.299 13 C -0.087 4.087 14 C 0.293 3.707 15 O -0.379 6.379 16 N -0.352 5.352 17 C -0.074 4.074 18 C 0.053 3.947 19 H 0.092 0.908 20 C -0.162 4.162 21 C -0.195 4.195 22 C -0.154 4.154 23 C -0.150 4.150 24 C -0.118 4.118 25 H 0.086 0.914 26 C -0.201 4.201 27 H 0.022 0.978 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.152 0.848 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.047 0.953 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.943 3.134 20.229 21.059 hybrid contribution -0.643 -0.130 -0.538 0.849 sum 4.300 3.005 19.691 20.378 Atomic orbital electron populations 1.22449 1.00687 0.99345 1.00423 1.19217 0.89577 0.94383 0.86391 0.94863 1.21200 1.29956 1.12413 0.89423 0.91728 1.24942 0.95367 0.95227 0.99037 1.69888 1.37559 1.23307 1.23203 0.86442 0.78506 0.79723 0.82770 1.19665 1.21230 1.21178 1.60579 1.58930 1.08354 1.02012 1.21840 0.99587 0.96830 0.90462 1.20828 0.78179 0.88035 0.83638 1.90745 1.46729 1.16053 1.84358 1.47849 1.61878 1.14023 1.11450 1.22208 0.99299 0.82922 1.02963 1.20979 0.93165 0.95438 0.85140 0.90787 1.21781 1.00769 0.96565 0.97066 1.22452 0.96479 0.97247 1.03301 1.21502 0.96259 0.99506 0.98106 1.21557 1.00052 0.95553 0.97867 1.21566 0.94620 0.96281 0.99340 0.91354 1.22438 0.99167 1.00714 0.97788 0.97765 0.89136 0.95212 0.93179 0.84766 0.93792 0.89209 0.92176 0.91434 0.89919 0.91417 0.90759 0.88458 0.92282 0.92537 0.92278 0.92340 0.91717 0.90271 0.95334 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.94 37.16 0.33 -3.73 16 2 C 0.21 5.33 2.57 -68.87 -0.18 5.15 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.49 16 4 C -0.49 -13.82 8.84 -34.44 -0.30 -14.12 16 5 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 N -0.67 -14.74 5.86 -109.22 -0.64 -15.38 16 13 C 0.05 0.81 4.70 -4.98 -0.02 0.78 16 14 C 0.50 8.22 6.05 -10.99 -0.07 8.15 16 15 O -0.50 -9.66 11.36 5.55 0.06 -9.60 16 16 N -0.62 -7.62 2.22 -174.08 -0.39 -8.00 16 17 C 0.07 0.64 7.93 59.85 0.47 1.12 16 18 C 0.16 1.76 2.63 -67.93 -0.18 1.59 16 19 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 20 C -0.12 -1.02 4.93 -26.73 -0.13 -1.16 16 21 C -0.16 -1.22 5.15 -26.73 -0.14 -1.36 16 22 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 23 C -0.11 -1.23 5.05 -26.73 -0.13 -1.36 16 24 C -0.10 -1.17 2.54 -90.62 -0.23 -1.40 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 C -0.14 -2.19 7.29 37.16 0.27 -1.92 16 27 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 28 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 29 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 31 H 0.33 7.43 8.17 -39.29 -0.32 7.11 16 32 H 0.04 0.73 6.53 -51.93 -0.34 0.39 16 33 H 0.09 1.55 8.06 -51.93 -0.42 1.13 16 34 H 0.06 0.53 6.67 -51.92 -0.35 0.18 16 35 H 0.07 0.64 6.59 -51.93 -0.34 0.30 16 36 H 0.08 0.61 4.76 -51.93 -0.25 0.36 16 37 H 0.07 0.51 7.22 -51.93 -0.37 0.14 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.75 3.22 -52.12 -0.17 0.58 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.80 7.36 -51.93 -0.38 0.42 16 45 H 0.08 1.42 4.93 -52.12 -0.26 1.17 16 46 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 1.14 6.88 -51.93 -0.36 0.78 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -30.01 340.47 -8.79 -38.80 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.00 Total: 5.31 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.56 Total: -7.99 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.40 Total: -48.46 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.06 Total: -9.60 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.01 -8.79 -38.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.567 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds