Wall clock time and date at job start Tue Mar 31 2020 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47222 * 2 1 4 4 C 1.50694 * 109.47348 * 239.99646 * 2 1 3 5 5 H 1.07996 * 120.00278 * 239.99807 * 4 2 1 6 6 C 1.37883 * 120.00144 * 60.00001 * 4 2 1 7 7 N 1.31514 * 119.99716 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00278 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46780 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47245 * 120.00017 * 8 6 4 11 11 H 1.48495 * 109.46931 * 240.00245 * 8 6 4 12 12 N 1.46898 * 109.47153 * 119.99748 * 2 1 3 13 13 C 1.46909 * 111.00076 * 275.00226 * 12 2 1 14 14 C 1.50690 * 109.47230 * 180.02562 * 13 12 2 15 15 O 1.21286 * 120.00364 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00174 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99844 * 6.24261 * 16 14 13 18 18 C 1.46503 * 119.99959 * 186.25042 * 16 14 13 19 19 H 1.09003 * 109.46978 * 306.60171 * 18 16 14 20 20 C 1.53002 * 109.46572 * 186.61181 * 18 16 14 21 21 C 1.53000 * 109.46949 * 299.99357 * 20 18 16 22 22 C 1.53008 * 109.47243 * 300.00372 * 21 20 18 23 23 C 1.53001 * 109.46936 * 60.00056 * 22 21 20 24 24 C 1.52995 * 109.47394 * 66.60788 * 18 16 14 25 25 H 1.08999 * 109.46968 * 179.97438 * 24 18 16 26 26 C 1.53001 * 109.47066 * 299.99896 * 24 18 16 27 27 H 1.08996 * 109.47183 * 300.00585 * 1 2 3 28 28 H 1.09001 * 109.46679 * 60.00106 * 1 2 3 29 29 H 1.08998 * 109.46910 * 180.02562 * 1 2 3 30 30 H 0.96994 * 120.00130 * 180.02562 * 7 6 4 31 31 H 1.00901 * 110.99906 * 38.95463 * 12 2 1 32 32 H 1.09000 * 109.47047 * 59.99809 * 13 12 2 33 33 H 1.09006 * 109.46924 * 300.00054 * 13 12 2 34 34 H 1.09007 * 109.46994 * 272.37788 * 17 16 14 35 35 H 1.09000 * 109.47115 * 32.37231 * 17 16 14 36 36 H 1.08994 * 109.47053 * 152.38040 * 17 16 14 37 37 H 1.08991 * 109.47638 * 59.99738 * 20 18 16 38 38 H 1.08999 * 109.46843 * 180.02562 * 20 18 16 39 39 H 1.08995 * 109.47424 * 60.00393 * 21 20 18 40 40 H 1.09001 * 109.47471 * 180.02562 * 21 20 18 41 41 H 1.08990 * 109.47050 * 299.99845 * 22 21 20 42 42 H 1.09000 * 109.47075 * 180.02562 * 22 21 20 43 43 H 1.08995 * 109.46721 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.46868 * 59.99789 * 23 22 21 45 45 H 1.09003 * 109.47105 * 65.83998 * 26 24 18 46 46 H 1.09001 * 109.46857 * 185.83586 * 26 24 18 47 47 H 1.08998 * 109.46965 * 305.83958 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0079 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5869 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 7 2.0197 -0.6924 1.1994 13 6 2.0824 0.2227 2.3469 14 6 2.5885 -0.5213 3.5557 15 8 2.8688 -1.6982 3.4701 16 7 2.7286 0.1209 4.7324 17 6 2.2618 1.5024 4.8731 18 6 3.3478 -0.5627 5.8707 19 1 2.8366 -1.5089 6.0482 20 6 3.2365 0.3185 7.1166 21 6 3.9540 1.6467 6.8676 22 6 5.4292 1.3800 6.5615 23 6 5.5403 0.4989 5.3156 24 6 4.8229 -0.8293 5.5646 25 1 5.2837 -1.3375 6.4117 26 6 4.9341 -1.7104 4.3187 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7090 1.1612 -3.4844 31 1 1.4496 -1.4979 1.4101 32 1 1.0870 0.6164 2.5525 33 1 2.7588 1.0464 2.1182 34 1 3.0550 2.1864 4.5712 35 1 1.3882 1.6570 4.2399 36 1 1.9951 1.6916 5.9128 37 1 2.1857 0.5084 7.3347 38 1 3.6976 -0.1899 7.9634 39 1 3.4934 2.1552 6.0207 40 1 3.8751 2.2743 7.7552 41 1 5.8898 0.8715 7.4084 42 1 5.9404 2.3263 6.3845 43 1 6.5912 0.3086 5.0978 44 1 5.0796 1.0075 4.4687 45 1 4.5677 -1.1612 3.4514 46 1 5.9767 -1.9859 4.1604 47 1 4.3370 -2.6118 4.4568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:27 Heat of formation + Delta-G solvation = -20.568269 kcal Electronic energy + Delta-G solvation = -23963.991379 eV Core-core repulsion = 20761.265357 eV Total energy + Delta-G solvation = -3202.726022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97031 -39.21425 -37.44947 -35.67291 -34.44120 -33.57232 -31.64867 -30.50172 -28.41883 -27.30839 -26.95829 -26.15251 -23.15794 -22.33773 -22.14166 -21.16971 -19.67299 -18.54005 -17.81011 -17.60153 -16.92233 -16.56391 -15.93820 -15.57758 -15.39584 -15.09176 -14.99666 -14.57364 -14.39459 -14.14884 -13.99726 -13.59112 -13.46906 -13.14553 -13.08880 -12.87809 -12.78100 -12.69895 -12.69434 -12.42950 -12.36935 -12.18210 -12.10917 -11.93675 -11.51519 -11.13040 -11.06374 -10.99956 -10.85769 -10.48742 -10.33582 -9.31733 -8.95829 -8.10388 -6.20216 1.41207 1.43168 1.56008 1.73517 2.06855 2.45145 3.18051 3.56504 3.75398 3.78130 3.88060 3.92785 4.22371 4.24518 4.32596 4.41391 4.46047 4.52245 4.56762 4.57462 4.64545 4.74158 4.74970 4.80382 4.88435 4.89253 4.94664 5.01492 5.07422 5.10214 5.19172 5.26236 5.34227 5.37366 5.40699 5.44021 5.49442 5.65164 5.69694 5.79040 5.84964 6.24869 6.43722 6.63415 6.76869 6.92764 7.35131 7.49417 8.95342 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028251 B = 0.003867 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.881381 B = 7239.141302 C = 7544.043685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.218 3.782 3 H 0.012 0.988 4 C -0.516 4.516 5 H 0.047 0.953 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.278 1.278 11 H -0.279 1.279 12 N -0.679 5.679 13 C 0.048 3.952 14 C 0.504 3.496 15 O -0.542 6.542 16 N -0.604 5.604 17 C 0.060 3.940 18 C 0.152 3.848 19 H 0.058 0.942 20 C -0.116 4.116 21 C -0.156 4.156 22 C -0.112 4.112 23 C -0.110 4.110 24 C -0.095 4.095 25 H 0.084 0.916 26 C -0.136 4.136 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.262 0.738 31 H 0.332 0.668 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.027 0.973 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 4.788 22.603 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.110 3.890 3 H 0.030 0.970 4 C -0.555 4.555 5 H 0.065 0.935 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.204 1.204 11 H -0.204 1.204 12 N -0.310 5.310 13 C -0.084 4.084 14 C 0.293 3.707 15 O -0.419 6.419 16 N -0.338 5.338 17 C -0.082 4.082 18 C 0.049 3.951 19 H 0.076 0.924 20 C -0.154 4.154 21 C -0.193 4.193 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.114 4.114 25 H 0.102 0.898 26 C -0.193 4.193 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.150 0.850 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.046 0.954 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.978 4.369 22.276 23.239 hybrid contribution -0.623 -0.488 -1.121 1.372 sum 4.356 3.881 21.155 21.944 Atomic orbital electron populations 1.22241 0.99686 0.99153 1.00467 1.18977 0.90212 0.92913 0.86907 0.97027 1.21443 1.30415 1.12376 0.91271 0.93490 1.25634 0.95439 0.95883 1.01579 1.69984 1.37912 1.24041 1.23975 0.85510 0.78134 0.78572 0.79410 1.19959 1.20362 1.20432 1.60394 1.58777 1.08991 1.02879 1.21834 1.00678 0.96126 0.89758 1.20567 0.78164 0.87531 0.84451 1.90744 1.48639 1.17519 1.85023 1.47815 1.60607 1.15053 1.10368 1.22520 0.99638 0.81038 1.04966 1.21106 0.92244 0.95711 0.86005 0.92408 1.21774 1.02010 0.96245 0.95346 1.22458 0.95482 0.97060 1.04298 1.21479 0.97337 0.99272 0.96840 1.21515 0.99341 0.95226 0.98709 1.21545 0.95579 0.96332 0.97982 0.89795 1.22272 0.98311 1.00174 0.98514 0.95030 0.91602 0.95419 0.92892 0.85043 0.92033 0.89118 0.91151 0.91395 0.87019 0.90014 0.89359 0.88469 0.90112 0.91605 0.91510 0.92810 0.93520 0.93234 0.95407 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.49 8.94 71.98 0.64 -6.84 16 2 C 0.22 11.21 2.57 44.17 0.11 11.32 16 3 H 0.01 0.65 7.80 -2.39 -0.02 0.63 16 4 C -0.52 -29.74 8.84 25.60 0.23 -29.51 16 5 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.85 11.32 21.45 0.24 -52.61 16 8 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 9 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 N -0.68 -30.77 5.86 -499.46 -2.92 -33.69 16 13 C 0.05 1.72 4.70 85.55 0.40 2.12 16 14 C 0.50 16.60 6.05 87.65 0.53 17.13 16 15 O -0.54 -21.56 11.36 -3.05 -0.03 -21.59 16 16 N -0.60 -14.27 2.22 -823.06 -1.83 -16.10 16 17 C 0.06 0.97 7.93 127.77 1.01 1.98 16 18 C 0.15 3.22 2.63 44.99 0.12 3.33 16 19 H 0.06 1.43 8.05 -2.39 -0.02 1.41 16 20 C -0.12 -1.50 4.93 30.60 0.15 -1.35 16 21 C -0.16 -1.78 5.15 30.60 0.16 -1.62 16 22 C -0.11 -1.57 5.92 30.60 0.18 -1.39 16 23 C -0.11 -2.26 5.05 30.59 0.15 -2.11 16 24 C -0.10 -2.17 2.54 -10.79 -0.03 -2.20 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 C -0.14 -4.28 7.29 71.98 0.52 -3.75 16 27 H 0.03 1.29 7.45 -2.39 -0.02 1.27 16 28 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 29 H 0.03 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.33 15.17 8.17 -89.69 -0.73 14.43 16 32 H 0.06 1.97 6.53 -2.39 -0.02 1.95 16 33 H 0.09 3.16 8.06 -2.38 -0.02 3.15 16 34 H 0.07 1.05 6.67 -2.38 -0.02 1.04 16 35 H 0.07 1.12 6.59 -2.39 -0.02 1.11 16 36 H 0.11 1.20 4.76 -2.39 -0.01 1.18 16 37 H 0.08 0.88 7.22 -2.39 -0.02 0.86 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 1.12 3.22 -2.57 -0.01 1.11 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.05 1.12 7.36 -2.39 -0.02 1.10 16 45 H 0.05 1.86 4.93 -5.38 -0.03 1.83 16 46 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.05 1.67 6.88 -2.39 -0.02 1.66 16 Total: -1.00 -66.55 340.47 2.32 -64.23 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.20 Total: 24.34 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.64 Total: -11.71 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -4.51 Total: -102.40 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.03 Total: -21.59 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -66.55 2.32 -64.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.658 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds