Wall clock time and date at job start Tue Mar 31 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47070 * 2 1 4 4 C 1.50696 * 109.46848 * 240.00379 * 2 1 3 5 5 H 1.08007 * 119.99751 * 239.99806 * 4 2 1 6 6 C 1.37878 * 120.00580 * 60.00125 * 4 2 1 7 7 N 1.31515 * 119.99401 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00460 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47291 * 59.99907 * 8 6 4 10 10 H 1.48498 * 109.47455 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47281 * 300.00047 * 8 6 4 12 12 N 1.46898 * 109.46869 * 120.00147 * 2 1 3 13 13 C 1.46899 * 111.00358 * 274.99643 * 12 2 1 14 14 H 1.09003 * 109.46477 * 35.00431 * 13 12 2 15 15 C 1.52995 * 109.47257 * 275.00392 * 13 12 2 16 16 C 1.50698 * 109.46987 * 154.99941 * 13 12 2 17 17 O 1.21283 * 120.00472 * 0.02562 * 16 13 12 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 13 12 19 19 C 1.46499 * 119.99665 * 179.72653 * 18 16 13 20 20 H 1.08999 * 109.47480 * 35.27807 * 19 18 16 21 21 C 1.52999 * 109.47136 * 275.27771 * 19 18 16 22 22 C 1.53005 * 109.47303 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.46840 * 59.99992 * 22 21 19 24 24 C 1.52999 * 109.47179 * 300.00084 * 23 22 21 25 25 C 1.52992 * 109.46921 * 60.00100 * 24 23 22 26 26 H 1.08999 * 109.47499 * 60.00085 * 25 24 23 27 27 C 1.53013 * 109.47279 * 179.97438 * 25 24 23 28 28 H 1.08991 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46931 * 300.00289 * 1 2 3 30 30 H 1.09001 * 109.46862 * 59.99456 * 1 2 3 31 31 H 0.97005 * 119.99810 * 179.97438 * 7 6 4 32 32 H 1.00904 * 110.99765 * 38.95776 * 12 2 1 33 33 H 1.09001 * 109.46983 * 179.97438 * 15 13 12 34 34 H 1.08995 * 109.47139 * 300.00021 * 15 13 12 35 35 H 1.09003 * 109.47199 * 59.99844 * 15 13 12 36 36 H 0.97001 * 120.00485 * 0.02562 * 18 16 13 37 37 H 1.09006 * 109.47500 * 299.99940 * 21 19 18 38 38 H 1.08999 * 109.47488 * 60.00276 * 21 19 18 39 39 H 1.08999 * 109.47389 * 300.00082 * 22 21 19 40 40 H 1.09000 * 109.47657 * 179.97438 * 22 21 19 41 41 H 1.09005 * 109.46967 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47442 * 60.00260 * 23 22 21 43 43 H 1.08999 * 109.46965 * 299.99858 * 24 23 22 44 44 H 1.09006 * 109.47222 * 180.02562 * 24 23 22 45 45 H 1.08991 * 109.47189 * 179.97438 * 27 25 24 46 46 H 1.08997 * 109.46640 * 300.00523 * 27 25 24 47 47 H 1.08999 * 109.46705 * 59.99697 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.8280 -2.5196 -4.0083 10 1 1.8279 -0.4190 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2576 0.9328 2.2907 15 6 3.4111 0.9807 2.3224 16 6 1.9786 -0.5678 3.6258 17 8 1.8639 -1.7746 3.5855 18 7 2.0141 0.0663 4.8145 19 6 1.9070 -0.7014 6.0577 20 1 2.4099 -1.6608 5.9368 21 6 0.4314 -0.9369 6.3862 22 6 0.3195 -1.7381 7.6849 23 6 0.9773 -0.9569 8.8242 24 6 2.4529 -0.7214 8.4957 25 6 2.5647 0.0797 7.1971 26 1 2.0617 1.0391 7.3176 27 6 4.0404 0.3158 6.8689 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7087 1.1615 -3.4844 32 1 1.4495 -1.4980 1.4099 33 1 3.4575 1.6600 3.1736 34 1 4.2359 0.2704 2.3785 35 1 3.4862 1.5524 1.3973 36 1 2.1061 1.0314 4.8469 37 1 -0.0716 0.0226 6.5072 38 1 -0.0374 -1.4929 5.5743 39 1 0.8225 -2.6975 7.5644 40 1 -0.7317 -1.9055 7.9192 41 1 0.8972 -1.5275 9.7496 42 1 0.4743 0.0025 8.9448 43 1 2.9559 -1.6809 8.3752 44 1 2.9217 -0.1653 9.3077 45 1 4.1200 0.8861 5.9435 46 1 4.5086 0.8724 7.6807 47 1 4.5438 -0.6435 6.7485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:13 Heat of formation + Delta-G solvation = -67.525118 kcal Electronic energy + Delta-G solvation = -23217.208930 eV Core-core repulsion = 20012.446706 eV Total energy + Delta-G solvation = -3204.762224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19042 -38.44334 -35.87310 -34.18824 -32.91034 -32.64173 -30.68160 -29.33727 -26.96458 -26.43427 -25.12726 -23.90200 -22.26046 -21.43536 -20.39651 -20.03951 -19.30980 -17.25744 -16.37487 -15.88788 -15.24245 -14.94702 -14.74578 -14.57633 -14.40320 -14.03306 -13.84866 -13.26840 -13.11524 -12.73635 -12.61760 -12.48017 -12.14217 -11.91327 -11.77680 -11.72298 -11.50812 -11.37103 -11.25011 -11.11994 -10.87853 -10.78932 -10.71844 -10.65837 -10.48360 -10.35656 -10.07380 -9.91401 -9.30502 -8.93880 -8.89986 -8.31905 -7.22862 -5.95196 -3.97524 2.96563 3.29190 3.38580 3.41515 3.46281 4.37668 4.47009 4.48354 4.62361 4.84774 4.95758 5.07308 5.18263 5.20736 5.22252 5.25476 5.31813 5.36731 5.48584 5.50879 5.64964 5.65950 5.76943 5.77991 5.80052 5.90547 5.93600 5.95678 6.05867 6.10161 6.14749 6.24564 6.33709 6.62364 6.68010 6.69817 6.87414 7.12078 7.34432 7.66144 7.78001 7.93412 8.30301 8.49371 8.59722 8.67065 9.10046 9.67532 11.12135 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035175 B = 0.003315 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.822953 B = 8444.830836 C = 8725.658882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.035 0.965 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.667 5.667 13 C 0.067 3.933 14 H 0.059 0.941 15 C -0.130 4.130 16 C 0.517 3.483 17 O -0.532 6.532 18 N -0.731 5.731 19 C 0.151 3.849 20 H 0.086 0.914 21 C -0.131 4.131 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.111 4.111 25 C -0.097 4.097 26 H 0.073 0.927 27 C -0.148 4.148 28 H 0.029 0.971 29 H 0.002 0.998 30 H 0.090 0.910 31 H 0.260 0.740 32 H 0.340 0.660 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 1.866 22.719 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.301 5.301 13 C -0.047 4.047 14 H 0.077 0.923 15 C -0.188 4.188 16 C 0.303 3.697 17 O -0.407 6.407 18 N -0.383 5.383 19 C 0.047 3.953 20 H 0.104 0.896 21 C -0.169 4.169 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.149 4.149 25 C -0.116 4.116 26 H 0.092 0.908 27 C -0.205 4.205 28 H 0.048 0.952 29 H 0.021 0.979 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.161 0.839 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.891 1.162 22.357 22.467 hybrid contribution -0.750 0.224 -0.667 1.028 sum 1.141 1.385 21.690 21.764 Atomic orbital electron populations 1.22460 1.00833 0.99359 1.00322 1.19244 0.89464 0.94456 0.86407 0.94681 1.21113 1.30131 1.12426 0.89475 0.91886 1.24937 0.95359 0.95233 0.99002 1.69875 1.37396 1.23274 1.23400 0.86549 0.79174 0.79647 0.81942 1.20352 1.21522 1.20289 1.60830 1.59135 1.08414 1.01721 1.21454 0.98791 0.95168 0.89240 0.92318 1.21712 0.96281 0.99213 1.01634 1.21093 0.74677 0.88600 0.85304 1.90655 1.48334 1.14536 1.87137 1.46100 1.76106 1.10672 1.05418 1.20936 0.95558 0.95958 0.82894 0.89564 1.21939 0.96616 1.00569 0.97814 1.21494 1.00671 0.98989 0.94332 1.21570 0.95690 1.00443 0.98140 1.21553 0.96651 1.00349 0.96330 1.21393 0.96565 0.99155 0.94534 0.90828 1.21831 0.95100 1.02054 1.01532 0.95224 0.97867 0.89149 0.93067 0.83943 0.93555 0.91947 0.91033 0.76853 0.91971 0.91283 0.91746 0.91873 0.91980 0.91998 0.91662 0.91656 0.92211 0.92660 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.92 37.16 0.33 -3.86 16 2 C 0.21 5.39 2.38 -68.87 -0.16 5.22 16 3 H 0.04 0.95 7.11 -51.93 -0.37 0.58 16 4 C -0.49 -13.92 8.84 -34.44 -0.30 -14.23 16 5 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.84 11.32 55.43 0.63 -25.21 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.67 -15.01 5.92 -102.17 -0.60 -15.61 16 13 C 0.07 1.21 2.84 -68.87 -0.20 1.02 16 14 H 0.06 1.05 7.11 -51.93 -0.37 0.68 16 15 C -0.13 -2.06 9.29 37.16 0.35 -1.71 16 16 C 0.52 8.61 7.14 -10.99 -0.08 8.53 16 17 O -0.53 -10.78 15.31 5.55 0.09 -10.69 16 18 N -0.73 -8.89 4.28 -53.81 -0.23 -9.12 16 19 C 0.15 1.66 1.90 -67.93 -0.13 1.53 16 20 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 21 C -0.13 -1.40 5.49 -26.73 -0.15 -1.54 16 22 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 23 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 24 C -0.11 -0.81 5.20 -26.74 -0.14 -0.95 16 25 C -0.10 -0.80 2.29 -90.62 -0.21 -1.01 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 C -0.15 -1.22 9.04 37.16 0.34 -0.88 16 28 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.00 0.05 7.43 -51.93 -0.39 -0.33 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.34 7.96 7.19 -39.29 -0.28 7.68 16 33 H 0.05 0.55 7.56 -51.93 -0.39 0.16 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.25 7.43 -51.93 -0.39 0.86 16 36 H 0.40 3.90 7.80 -40.82 -0.32 3.58 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.52 7.44 -51.93 -0.39 0.13 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -30.54 362.86 -9.08 -39.62 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -8.64 Total: 7.33 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.76 Total: -8.64 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.21 Total: -49.94 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.54 -9.08 -39.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.907 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds