Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47070 * 2 1 4 4 C 1.50696 * 109.46848 * 240.00379 * 2 1 3 5 5 H 1.08007 * 119.99751 * 239.99806 * 4 2 1 6 6 C 1.37878 * 120.00580 * 60.00125 * 4 2 1 7 7 N 1.31515 * 119.99401 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00460 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47291 * 59.99907 * 8 6 4 10 10 H 1.48498 * 109.47455 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47281 * 300.00047 * 8 6 4 12 12 N 1.46898 * 109.46869 * 120.00147 * 2 1 3 13 13 C 1.46899 * 111.00358 * 274.99643 * 12 2 1 14 14 H 1.09003 * 109.46477 * 35.00431 * 13 12 2 15 15 C 1.52995 * 109.47257 * 275.00392 * 13 12 2 16 16 C 1.50698 * 109.46987 * 154.99941 * 13 12 2 17 17 O 1.21283 * 120.00472 * 0.02562 * 16 13 12 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 13 12 19 19 C 1.46499 * 119.99665 * 179.72653 * 18 16 13 20 20 H 1.08999 * 109.47480 * 35.27807 * 19 18 16 21 21 C 1.52999 * 109.47136 * 275.27771 * 19 18 16 22 22 C 1.53005 * 109.47303 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.46840 * 59.99992 * 22 21 19 24 24 C 1.52999 * 109.47179 * 300.00084 * 23 22 21 25 25 C 1.52992 * 109.46921 * 60.00100 * 24 23 22 26 26 H 1.08999 * 109.47499 * 60.00085 * 25 24 23 27 27 C 1.53013 * 109.47279 * 179.97438 * 25 24 23 28 28 H 1.08991 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46931 * 300.00289 * 1 2 3 30 30 H 1.09001 * 109.46862 * 59.99456 * 1 2 3 31 31 H 0.97005 * 119.99810 * 179.97438 * 7 6 4 32 32 H 1.00904 * 110.99765 * 38.95776 * 12 2 1 33 33 H 1.09001 * 109.46983 * 179.97438 * 15 13 12 34 34 H 1.08995 * 109.47139 * 300.00021 * 15 13 12 35 35 H 1.09003 * 109.47199 * 59.99844 * 15 13 12 36 36 H 0.97001 * 120.00485 * 0.02562 * 18 16 13 37 37 H 1.09006 * 109.47500 * 299.99940 * 21 19 18 38 38 H 1.08999 * 109.47488 * 60.00276 * 21 19 18 39 39 H 1.08999 * 109.47389 * 300.00082 * 22 21 19 40 40 H 1.09000 * 109.47657 * 179.97438 * 22 21 19 41 41 H 1.09005 * 109.46967 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47442 * 60.00260 * 23 22 21 43 43 H 1.08999 * 109.46965 * 299.99858 * 24 23 22 44 44 H 1.09006 * 109.47222 * 180.02562 * 24 23 22 45 45 H 1.08991 * 109.47189 * 179.97438 * 27 25 24 46 46 H 1.08997 * 109.46640 * 300.00523 * 27 25 24 47 47 H 1.08999 * 109.46705 * 59.99697 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.8280 -2.5196 -4.0083 10 1 1.8279 -0.4190 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2576 0.9328 2.2907 15 6 3.4111 0.9807 2.3224 16 6 1.9786 -0.5678 3.6258 17 8 1.8639 -1.7746 3.5855 18 7 2.0141 0.0663 4.8145 19 6 1.9070 -0.7014 6.0577 20 1 2.4099 -1.6608 5.9368 21 6 0.4314 -0.9369 6.3862 22 6 0.3195 -1.7381 7.6849 23 6 0.9773 -0.9569 8.8242 24 6 2.4529 -0.7214 8.4957 25 6 2.5647 0.0797 7.1971 26 1 2.0617 1.0391 7.3176 27 6 4.0404 0.3158 6.8689 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7087 1.1615 -3.4844 32 1 1.4495 -1.4980 1.4099 33 1 3.4575 1.6600 3.1736 34 1 4.2359 0.2704 2.3785 35 1 3.4862 1.5524 1.3973 36 1 2.1061 1.0314 4.8469 37 1 -0.0716 0.0226 6.5072 38 1 -0.0374 -1.4929 5.5743 39 1 0.8225 -2.6975 7.5644 40 1 -0.7317 -1.9055 7.9192 41 1 0.8972 -1.5275 9.7496 42 1 0.4743 0.0025 8.9448 43 1 2.9559 -1.6809 8.3752 44 1 2.9217 -0.1653 9.3077 45 1 4.1200 0.8861 5.9435 46 1 4.5086 0.8724 7.6807 47 1 4.5438 -0.6435 6.7485 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = -87.072304 kcal Electronic energy + Delta-G solvation = -23218.056560 eV Core-core repulsion = 20012.446706 eV Total energy + Delta-G solvation = -3205.609854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.34340 -39.48598 -37.61571 -35.30136 -34.77874 -33.40147 -32.33573 -30.35761 -28.66794 -27.26988 -27.17590 -25.17638 -23.30434 -22.20319 -21.87223 -21.27233 -20.51585 -18.84930 -17.68589 -17.54181 -16.69883 -16.52127 -16.04116 -15.53122 -15.26900 -15.21367 -14.91525 -14.53816 -14.51428 -14.12623 -13.85466 -13.62781 -13.34647 -13.26368 -13.17961 -12.89228 -12.84331 -12.77605 -12.60710 -12.47826 -12.30179 -12.15174 -12.09447 -11.91190 -11.80120 -11.44446 -11.39331 -11.15626 -11.07718 -10.61262 -10.47401 -10.00317 -9.03141 -8.10117 -6.20141 1.43239 1.44994 1.52872 1.62185 2.14098 2.45290 3.18364 3.57727 3.61811 3.76283 3.82550 3.97240 4.17364 4.20113 4.23988 4.34280 4.45474 4.49411 4.55233 4.56408 4.68197 4.78997 4.80172 4.85484 4.86291 4.91123 5.01654 5.07100 5.10776 5.14388 5.17189 5.27223 5.28446 5.33013 5.37905 5.39247 5.42486 5.51212 5.62421 5.68259 5.80515 6.25468 6.49804 6.63299 6.78651 6.92209 7.26454 7.49178 8.95553 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035175 B = 0.003315 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.822953 B = 8444.830836 C = 8725.658882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.219 3.781 3 H 0.018 0.982 4 C -0.518 4.518 5 H 0.049 0.951 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.273 1.273 12 N -0.677 5.677 13 C 0.063 3.937 14 H 0.065 0.935 15 C -0.123 4.123 16 C 0.520 3.480 17 O -0.574 6.574 18 N -0.708 5.708 19 C 0.150 3.850 20 H 0.059 0.941 21 C -0.128 4.128 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.110 4.110 25 C -0.089 4.089 26 H 0.091 0.909 27 C -0.148 4.148 28 H 0.023 0.977 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.262 0.738 32 H 0.332 0.668 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 3.051 24.641 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.111 3.889 3 H 0.035 0.965 4 C -0.557 4.557 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.198 1.198 12 N -0.310 5.310 13 C -0.050 4.050 14 H 0.083 0.917 15 C -0.181 4.181 16 C 0.307 3.693 17 O -0.452 6.452 18 N -0.360 5.360 19 C 0.046 3.954 20 H 0.077 0.923 21 C -0.166 4.166 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.148 4.148 25 C -0.108 4.108 26 H 0.110 0.890 27 C -0.205 4.205 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.250 0.750 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.247 2.390 24.323 24.543 hybrid contribution -0.864 -0.127 -1.195 1.480 sum 1.383 2.263 23.128 23.280 Atomic orbital electron populations 1.22278 1.00352 0.98873 1.00238 1.18995 0.89679 0.93244 0.86976 0.96456 1.21388 1.30608 1.12481 0.91218 0.93286 1.25655 0.95413 0.95885 1.01641 1.69978 1.37811 1.24086 1.24109 0.85596 0.78719 0.78566 0.78618 1.20107 1.20621 1.19850 1.60716 1.58661 1.08916 1.02682 1.21567 1.00222 0.94664 0.88547 0.91706 1.21673 0.94500 0.99222 1.02687 1.20813 0.74610 0.87829 0.86058 1.90644 1.50686 1.16226 1.87677 1.45910 1.74040 1.11489 1.04570 1.21060 0.95989 0.95249 0.83104 0.92300 1.21896 0.95988 1.01009 0.97744 1.21492 1.01307 0.98501 0.94070 1.21552 0.95370 1.00787 0.97647 1.21569 0.96868 1.00093 0.96240 1.21371 0.96383 0.99502 0.93512 0.89030 1.21840 0.95006 1.01541 1.02136 0.95811 0.95589 0.91412 0.92881 0.84837 0.88972 0.92919 0.92920 0.75002 0.90655 0.94630 0.92859 0.91204 0.90741 0.90936 0.92515 0.89687 0.92564 0.90769 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.88 8.92 71.98 0.64 -7.24 16 2 C 0.22 11.39 2.38 44.17 0.11 11.50 16 3 H 0.02 0.96 7.11 -2.39 -0.02 0.95 16 4 C -0.52 -29.90 8.84 25.60 0.23 -29.68 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.25 11.32 21.45 0.24 -53.00 16 8 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 N -0.68 -31.13 5.92 -477.17 -2.82 -33.96 16 13 C 0.06 2.27 2.84 44.17 0.13 2.39 16 14 H 0.07 2.26 7.11 -2.39 -0.02 2.24 16 15 C -0.12 -3.76 9.29 71.98 0.67 -3.09 16 16 C 0.52 17.30 7.14 87.66 0.63 17.92 16 17 O -0.57 -23.94 15.31 -3.04 -0.05 -23.99 16 18 N -0.71 -16.29 4.28 -442.54 -1.89 -18.19 16 19 C 0.15 3.16 1.90 44.99 0.09 3.25 16 20 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 21 C -0.13 -2.63 5.49 30.60 0.17 -2.46 16 22 C -0.12 -1.89 5.92 30.60 0.18 -1.71 16 23 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 24 C -0.11 -1.30 5.20 30.59 0.16 -1.14 16 25 C -0.09 -1.22 2.29 -10.79 -0.02 -1.25 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 C -0.15 -2.07 9.04 71.99 0.65 -1.42 16 28 H 0.02 1.16 8.13 -2.39 -0.02 1.14 16 29 H 0.03 1.12 7.43 -2.39 -0.02 1.11 16 30 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 31 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 32 H 0.33 16.05 7.19 -89.69 -0.64 15.41 16 33 H 0.09 1.93 7.56 -2.39 -0.02 1.91 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.82 7.43 -2.39 -0.02 1.80 16 36 H 0.41 6.96 7.80 -92.71 -0.72 6.24 16 37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.06 0.82 7.44 -2.39 -0.02 0.80 16 46 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -67.59 362.86 1.32 -66.27 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.43 Total: 28.70 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 4.24 Total: -12.94 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -4.47 Total: -105.15 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -67.59 1.32 -66.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.798 kcal (2) G-P(sol) polarization free energy of solvation -67.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds