Wall clock time and date at job start Tue Mar 31 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 C 1.50703 * 109.46955 * 240.00328 * 2 1 3 5 5 H 1.08000 * 119.99818 * 239.99932 * 4 2 1 6 6 C 1.37872 * 119.99994 * 60.00060 * 4 2 1 7 7 N 1.31509 * 120.00014 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99677 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47472 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47006 * 120.00038 * 8 6 4 11 11 H 1.48500 * 109.47011 * 239.99477 * 8 6 4 12 12 N 1.46899 * 109.47117 * 120.00010 * 2 1 3 13 13 C 1.46894 * 111.00313 * 274.99668 * 12 2 1 14 14 H 1.08998 * 109.46828 * 35.00794 * 13 12 2 15 15 C 1.52997 * 109.47515 * 275.00230 * 13 12 2 16 16 C 1.50706 * 109.47162 * 154.99823 * 13 12 2 17 17 O 1.21282 * 119.99865 * 0.02562 * 16 13 12 18 18 N 1.34774 * 120.00164 * 180.02562 * 16 13 12 19 19 C 1.46496 * 120.00339 * 180.02562 * 18 16 13 20 20 H 1.09007 * 109.46916 * 325.00088 * 19 18 16 21 21 C 1.53002 * 109.47001 * 84.99506 * 19 18 16 22 22 C 1.53006 * 109.46876 * 180.02562 * 21 19 18 23 23 C 1.53005 * 109.47228 * 300.00227 * 22 21 19 24 24 C 1.53001 * 109.46739 * 59.99965 * 23 22 21 25 25 C 1.52992 * 109.47445 * 204.99941 * 19 18 16 26 26 H 1.08997 * 109.47063 * 300.00119 * 25 19 18 27 27 C 1.53007 * 109.47111 * 60.00026 * 25 19 18 28 28 H 1.09001 * 109.46980 * 299.99887 * 1 2 3 29 29 H 1.08999 * 109.47248 * 59.99311 * 1 2 3 30 30 H 1.09001 * 109.47202 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00233 * 180.02562 * 7 6 4 32 32 H 1.00906 * 110.99722 * 151.04100 * 12 2 1 33 33 H 1.09002 * 109.47153 * 59.99762 * 15 13 12 34 34 H 1.09001 * 109.46832 * 299.99953 * 15 13 12 35 35 H 1.09004 * 109.47261 * 179.97438 * 15 13 12 36 36 H 0.97005 * 119.99795 * 359.97438 * 18 16 13 37 37 H 1.08994 * 109.47420 * 300.00519 * 21 19 18 38 38 H 1.09007 * 109.46811 * 60.00518 * 21 19 18 39 39 H 1.08994 * 109.46761 * 60.00503 * 22 21 19 40 40 H 1.09001 * 109.46914 * 180.02562 * 22 21 19 41 41 H 1.08992 * 109.46674 * 180.02562 * 23 22 21 42 42 H 1.08998 * 109.46782 * 300.00015 * 23 22 21 43 43 H 1.08997 * 109.46986 * 60.00183 * 24 23 22 44 44 H 1.08994 * 109.46781 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.47081 * 60.00104 * 27 25 19 46 46 H 1.09000 * 109.46831 * 180.02562 * 27 25 19 47 47 H 1.09002 * 109.46869 * 300.00025 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3225 -1.1194 -4.0079 9 1 3.1473 -2.2862 -3.6039 10 1 1.1677 -1.5864 -4.8165 11 1 3.1471 -0.1855 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9328 2.2907 15 6 3.4112 0.9808 2.3224 16 6 1.9786 -0.5678 3.6259 17 8 1.8640 -1.7745 3.5855 18 7 2.0131 0.0664 4.8146 19 6 1.9127 -0.7018 6.0579 20 1 1.2429 -1.5488 5.9086 21 6 3.2992 -1.2121 6.4555 22 6 3.1942 -2.0150 7.7537 23 6 2.6426 -1.1188 8.8645 24 6 1.2561 -0.6086 8.4667 25 6 1.3614 0.1947 7.1683 26 1 2.0311 1.0416 7.3176 27 6 -0.0252 0.7049 6.7707 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7081 1.1610 -3.4843 32 1 2.9173 -1.1206 1.0286 33 1 3.4863 1.5524 1.3973 34 1 4.2360 0.2704 2.3785 35 1 3.4576 1.6601 3.1736 36 1 2.1052 1.0315 4.8469 37 1 3.6920 -1.8508 5.6644 38 1 3.9690 -0.3651 6.6048 39 1 2.5246 -2.8618 7.6040 40 1 4.1821 -2.3781 8.0373 41 1 2.5683 -1.6907 9.7893 42 1 3.3123 -0.2719 9.0142 43 1 0.5865 -1.4555 8.3170 44 1 0.8630 0.0294 9.2582 45 1 -0.6949 -0.1420 6.6214 46 1 -0.4177 1.3440 7.5616 47 1 0.0495 1.2766 5.8456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:15 Heat of formation + Delta-G solvation = -67.097626 kcal Electronic energy + Delta-G solvation = -23200.914178 eV Core-core repulsion = 19996.170491 eV Total energy + Delta-G solvation = -3204.743687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.05274 -38.30374 -35.93458 -34.03942 -33.00245 -32.58718 -30.56078 -29.31609 -26.92997 -26.40127 -25.20685 -23.91439 -22.31722 -21.39233 -20.29135 -19.91332 -19.31922 -17.18550 -16.28691 -15.94585 -15.08332 -14.84789 -14.75772 -14.42908 -14.28977 -13.93418 -13.77935 -13.30230 -13.21024 -12.97140 -12.55313 -12.37578 -12.26719 -12.09294 -11.92678 -11.71999 -11.47910 -11.34967 -11.08121 -10.98614 -10.82220 -10.73638 -10.67696 -10.60130 -10.38033 -10.30590 -10.11021 -9.99866 -9.15890 -8.81204 -8.77317 -8.46560 -7.21472 -6.02226 -4.07749 3.15625 3.30154 3.37419 3.38789 3.44133 4.41972 4.42695 4.51531 4.66592 4.88768 4.99765 5.14720 5.21853 5.24156 5.26018 5.29876 5.31825 5.37866 5.51747 5.52991 5.55249 5.63439 5.70227 5.81577 5.84068 5.94115 5.97475 5.99948 6.00878 6.11026 6.15679 6.21119 6.29650 6.43526 6.74378 6.87129 7.15097 7.22577 7.48081 7.76642 7.83341 7.91490 8.27928 8.40499 8.64982 8.74537 9.03162 9.58179 11.04322 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035415 B = 0.003319 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.442824 B = 8432.984782 C = 8757.325727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.515 4.515 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.664 5.664 13 C 0.069 3.931 14 H 0.095 0.905 15 C -0.174 4.174 16 C 0.519 3.481 17 O -0.519 6.519 18 N -0.736 5.736 19 C 0.152 3.848 20 H 0.085 0.915 21 C -0.129 4.129 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.111 4.111 25 C -0.097 4.097 26 H 0.073 0.927 27 C -0.148 4.148 28 H 0.002 0.998 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.337 0.663 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.394 0.606 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 2.283 21.927 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.296 5.296 13 C -0.045 4.045 14 H 0.113 0.887 15 C -0.233 4.233 16 C 0.305 3.695 17 O -0.392 6.392 18 N -0.390 5.390 19 C 0.047 3.953 20 H 0.103 0.897 21 C -0.168 4.168 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.149 4.149 25 C -0.116 4.116 26 H 0.091 0.909 27 C -0.205 4.205 28 H 0.021 0.979 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.156 0.844 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.228 0.772 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.048 1.231 21.868 21.998 hybrid contribution 1.084 0.667 -1.082 1.670 sum 3.132 1.898 20.787 21.107 Atomic orbital electron populations 1.21745 0.97912 0.99560 0.99158 1.19148 0.92553 0.92352 0.85330 0.97900 1.21293 1.31305 1.12487 0.90328 0.92065 1.24903 0.95054 0.95006 0.99029 1.69902 1.36748 1.22998 1.23343 0.86460 0.78623 0.79642 0.82808 1.19701 1.20985 1.21142 1.60422 1.32933 1.31463 1.04743 1.21435 0.98036 0.93998 0.91074 0.88693 1.22444 0.97692 1.00604 1.02560 1.21057 0.75053 0.88720 0.84684 1.90652 1.46953 1.14503 1.87072 1.46168 1.76917 1.10457 1.05433 1.20890 0.96642 0.94679 0.83052 0.89675 1.21927 0.97287 1.00039 0.97541 1.21499 1.01095 0.98365 0.94564 1.21565 0.96640 0.99461 0.98136 1.21562 0.97324 0.99750 0.96268 1.21399 0.97486 0.98089 0.94657 0.90902 1.21828 0.96079 1.01263 1.01346 0.97929 0.90017 0.94814 0.93011 0.84405 0.91022 0.92433 0.92902 0.77182 0.91299 0.92076 0.91756 0.91955 0.92036 0.92044 0.91663 0.91721 0.92502 0.92719 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.17 37.16 0.34 -2.84 16 2 C 0.21 5.40 2.41 -68.86 -0.17 5.24 16 3 H 0.00 0.09 7.11 -51.93 -0.37 -0.28 16 4 C -0.52 -14.29 8.59 -34.44 -0.30 -14.59 16 5 H 0.06 1.70 7.62 -52.49 -0.40 1.30 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.37 11.32 55.43 0.63 -24.75 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.66 -14.82 5.54 -102.17 -0.57 -15.39 16 13 C 0.07 1.23 2.81 -68.87 -0.19 1.04 16 14 H 0.10 1.69 7.11 -51.93 -0.37 1.33 16 15 C -0.17 -2.59 9.04 37.16 0.34 -2.26 16 16 C 0.52 8.85 7.19 -10.98 -0.08 8.77 16 17 O -0.52 -11.00 16.09 5.56 0.09 -10.91 16 18 N -0.74 -9.17 4.28 -53.81 -0.23 -9.40 16 19 C 0.15 1.73 1.90 -67.94 -0.13 1.60 16 20 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 21 C -0.13 -1.39 5.49 -26.73 -0.15 -1.54 16 22 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 23 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 24 C -0.11 -0.85 5.21 -26.71 -0.14 -0.99 16 25 C -0.10 -0.84 2.30 -90.60 -0.21 -1.05 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 C -0.15 -1.31 9.04 37.16 0.34 -0.97 16 28 H 0.00 0.04 7.43 -51.93 -0.39 -0.35 16 29 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.34 7.57 7.96 -39.29 -0.31 7.25 16 33 H 0.07 1.18 7.43 -51.93 -0.39 0.79 16 34 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 35 H 0.05 0.61 7.57 -51.93 -0.39 0.22 16 36 H 0.39 3.95 7.81 -40.82 -0.32 3.63 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -30.81 363.66 -9.04 -39.85 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.66 Total: 6.88 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -0.76 Total: -8.21 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.17 Total: -49.53 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.81 -9.04 -39.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.250 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds