Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47580 * 2 1 4 4 C 1.50705 * 109.47195 * 239.99905 * 2 1 3 5 5 H 1.07991 * 120.00525 * 245.37937 * 4 2 1 6 6 C 1.37880 * 119.99441 * 65.37724 * 4 2 1 7 7 N 1.31513 * 119.99742 * 185.16643 * 6 4 2 8 8 Si 1.86794 * 120.00168 * 5.16482 * 6 4 2 9 9 H 1.48496 * 109.47385 * 270.00050 * 8 6 4 10 10 H 1.48500 * 109.47377 * 30.00115 * 8 6 4 11 11 H 1.48503 * 109.46985 * 150.00184 * 8 6 4 12 12 N 1.46900 * 109.47254 * 120.00520 * 2 1 3 13 13 C 1.46906 * 110.99762 * 274.99622 * 12 2 1 14 14 H 1.08997 * 109.47021 * 35.00299 * 13 12 2 15 15 C 1.52998 * 109.47091 * 274.99979 * 13 12 2 16 16 C 1.50700 * 109.46758 * 154.99864 * 13 12 2 17 17 O 1.21279 * 120.00459 * 0.02562 * 16 13 12 18 18 N 1.34775 * 119.99576 * 179.97438 * 16 13 12 19 19 C 1.46507 * 120.00080 * 180.02562 * 18 16 13 20 20 H 1.09006 * 109.46830 * 325.00535 * 19 18 16 21 21 C 1.52995 * 109.46873 * 85.00106 * 19 18 16 22 22 C 1.53001 * 109.47442 * 60.00222 * 21 19 18 23 23 C 1.53004 * 109.46743 * 59.99834 * 22 21 19 24 24 C 1.53003 * 109.47238 * 300.00017 * 23 22 21 25 25 C 1.52994 * 109.47300 * 205.00043 * 19 18 16 26 26 H 1.08998 * 109.47359 * 179.97438 * 25 19 18 27 27 C 1.53003 * 109.47057 * 59.99963 * 25 19 18 28 28 H 1.08995 * 109.46839 * 54.97773 * 1 2 3 29 29 H 1.09001 * 109.47403 * 174.98010 * 1 2 3 30 30 H 1.08999 * 109.46930 * 294.97352 * 1 2 3 31 31 H 0.96998 * 120.00440 * 354.99448 * 7 6 4 32 32 H 1.00900 * 111.00306 * 151.04811 * 12 2 1 33 33 H 1.08998 * 109.47398 * 59.99750 * 15 13 12 34 34 H 1.09000 * 109.47012 * 179.97438 * 15 13 12 35 35 H 1.09005 * 109.47320 * 299.99760 * 15 13 12 36 36 H 0.97001 * 120.00112 * 0.02562 * 18 16 13 37 37 H 1.09007 * 109.46893 * 180.02562 * 21 19 18 38 38 H 1.09004 * 109.47506 * 299.99905 * 21 19 18 39 39 H 1.09002 * 109.47330 * 300.00282 * 22 21 19 40 40 H 1.09001 * 109.47322 * 179.97438 * 22 21 19 41 41 H 1.09003 * 109.46732 * 180.02562 * 23 22 21 42 42 H 1.08990 * 109.47116 * 60.00460 * 23 22 21 43 43 H 1.08998 * 109.46835 * 300.00409 * 24 23 22 44 44 H 1.08993 * 109.47116 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.47048 * 60.00119 * 27 25 19 46 46 H 1.09002 * 109.47047 * 179.97438 * 27 25 19 47 47 H 1.09003 * 109.47515 * 300.00268 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6363 -1.1339 6 6 1.7930 -0.1782 -2.4797 7 7 2.1412 -0.8471 -3.5571 8 14 0.9742 1.4929 -2.6418 9 1 -0.4990 1.3181 -2.7072 10 1 1.3215 2.3305 -1.4657 11 1 1.4492 2.1587 -3.8813 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9328 2.2908 15 6 3.4112 0.9807 2.3223 16 6 1.9787 -0.5679 3.6258 17 8 1.8641 -1.7745 3.5854 18 7 2.0142 0.0663 4.8145 19 6 1.9137 -0.7020 6.0579 20 1 1.2434 -1.5485 5.9088 21 6 3.3001 -1.2131 6.4549 22 6 4.2411 -0.0251 6.6641 23 6 3.6909 0.8718 7.7749 24 6 2.3045 1.3830 7.3779 25 6 1.3636 0.1949 7.1686 26 1 1.2885 -0.3768 8.0936 27 6 -0.0228 0.7061 6.7716 28 1 -0.3633 0.5898 -0.8416 29 1 -0.3634 -1.0237 -0.0899 30 1 -0.3633 0.4339 0.9316 31 1 2.6310 -1.6802 -3.4737 32 1 2.9173 -1.1206 1.0287 33 1 3.4863 1.5523 1.3973 34 1 3.4576 1.6600 3.1735 35 1 4.2361 0.2704 2.3785 36 1 2.1062 1.0314 4.8468 37 1 3.2253 -1.7852 7.3798 38 1 3.6921 -1.8522 5.6636 39 1 4.3158 0.5467 5.7391 40 1 5.2287 -0.3892 6.9474 41 1 4.3611 1.7185 7.9237 42 1 3.6163 0.3002 8.6999 43 1 2.3793 1.9546 6.4528 44 1 1.9127 2.0223 8.1690 45 1 -0.6932 -0.1404 6.6226 46 1 -0.4149 1.3447 7.5632 47 1 0.0518 1.2777 5.8465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = -63.165340 kcal Electronic energy + Delta-G solvation = -23629.502124 eV Core-core repulsion = 20424.928954 eV Total energy + Delta-G solvation = -3204.573170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35753 -38.34330 -36.12672 -33.66213 -33.00806 -32.67373 -31.00293 -29.82209 -27.41398 -26.46544 -24.88378 -23.79235 -22.59991 -21.62400 -20.43052 -19.56338 -19.06823 -17.79103 -16.73366 -15.91410 -15.40357 -15.33777 -14.80039 -14.48081 -14.28585 -13.93174 -13.61733 -13.47246 -13.22041 -13.05430 -12.70435 -12.49348 -12.38776 -12.14475 -12.09623 -11.87542 -11.76381 -11.70581 -11.24676 -11.15547 -11.09625 -10.99919 -10.77810 -10.51140 -10.41959 -10.19503 -10.02400 -9.76298 -9.27701 -8.84659 -8.66802 -8.46280 -7.45294 -6.42906 -4.08598 3.05885 3.33455 3.36888 3.40220 3.56792 4.38363 4.46606 4.47145 4.51933 4.84216 4.95587 4.99593 5.07666 5.16399 5.23013 5.26187 5.30376 5.36496 5.37229 5.41067 5.46443 5.55777 5.61033 5.70802 5.78799 5.83413 5.85610 5.95017 5.99431 6.04864 6.06707 6.14962 6.18661 6.27256 6.44381 6.59956 6.68134 6.74521 6.83677 7.45556 7.61487 7.77946 8.10489 8.40699 8.46430 8.64215 8.95351 9.62131 10.97167 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.003850 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.343803 B = 7270.403712 C = 7431.484954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.183 3.817 3 H 0.003 0.997 4 C -0.594 4.594 5 H 0.062 0.938 6 C 0.028 3.972 7 N -0.913 5.913 8 Si 1.059 2.941 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.291 1.291 12 N -0.656 5.656 13 C 0.066 3.934 14 H 0.094 0.906 15 C -0.175 4.175 16 C 0.519 3.481 17 O -0.518 6.518 18 N -0.731 5.731 19 C 0.153 3.847 20 H 0.085 0.915 21 C -0.131 4.131 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.098 4.098 26 H 0.081 0.919 27 C -0.148 4.148 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.268 0.732 32 H 0.344 0.656 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.394 0.606 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.200 7.532 24.303 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.074 3.926 3 H 0.020 0.980 4 C -0.633 4.633 5 H 0.080 0.920 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.889 3.111 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.218 1.218 12 N -0.287 5.287 13 C -0.049 4.049 14 H 0.112 0.888 15 C -0.234 4.234 16 C 0.304 3.696 17 O -0.391 6.391 18 N -0.386 5.386 19 C 0.048 3.952 20 H 0.103 0.897 21 C -0.169 4.169 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.117 4.117 26 H 0.099 0.901 27 C -0.205 4.205 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.102 7.443 23.289 24.450 hybrid contribution 1.381 -0.146 0.917 1.664 sum 1.279 7.298 24.206 25.315 Atomic orbital electron populations 1.22043 0.98647 1.01168 0.97506 1.19628 0.91843 0.92978 0.88113 0.97994 1.22161 1.39708 1.10297 0.91092 0.92011 1.25733 0.96516 1.03519 0.91902 1.70793 1.36811 1.16882 1.30282 0.83801 0.76421 0.75581 0.75331 1.21005 1.20782 1.21776 1.60241 1.33549 1.30954 1.03944 1.21490 0.98090 0.94038 0.91284 0.88763 1.22454 0.97737 1.00698 1.02545 1.20948 0.75279 0.88692 0.84661 1.90664 1.46920 1.14435 1.87059 1.46177 1.76668 1.10471 1.05284 1.20847 0.96548 0.94456 0.83396 0.89654 1.21916 0.95546 0.97816 1.01645 1.21495 0.98384 0.96826 0.98867 1.21548 0.96256 0.99253 0.98623 1.21600 0.95054 0.97231 1.01409 1.21410 0.95159 0.96758 0.98365 0.90073 1.21823 0.95886 1.01347 1.01450 0.94193 0.92563 0.95917 0.92208 0.83681 0.91101 0.92756 0.92176 0.77111 0.91488 0.91264 0.91793 0.92247 0.92115 0.92037 0.92058 0.91764 0.92460 0.92686 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.01 37.16 0.33 -2.76 16 2 C 0.18 4.38 1.99 -68.86 -0.14 4.24 16 3 H 0.00 0.06 5.62 -51.93 -0.29 -0.23 16 4 C -0.59 -16.81 8.92 -34.44 -0.31 -17.12 16 5 H 0.06 1.90 7.90 -52.49 -0.41 1.48 16 6 C 0.03 0.81 5.43 -17.82 -0.10 0.71 16 7 N -0.91 -28.32 13.70 55.43 0.76 -27.56 16 8 Si 1.06 25.53 25.29 -169.99 -4.30 21.24 16 9 H -0.28 -6.55 6.81 56.52 0.38 -6.17 16 10 H -0.28 -6.24 6.36 56.52 0.36 -5.88 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 N -0.66 -14.17 5.54 -102.17 -0.57 -14.74 16 13 C 0.07 1.10 2.79 -68.86 -0.19 0.91 16 14 H 0.09 1.53 7.10 -51.93 -0.37 1.16 16 15 C -0.17 -2.48 9.04 37.16 0.34 -2.14 16 16 C 0.52 8.42 7.19 -10.99 -0.08 8.34 16 17 O -0.52 -10.64 16.09 5.56 0.09 -10.55 16 18 N -0.73 -8.52 3.43 -53.81 -0.18 -8.70 16 19 C 0.15 1.62 2.23 -67.93 -0.15 1.47 16 20 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 21 C -0.13 -1.33 5.60 -26.73 -0.15 -1.48 16 22 C -0.12 -1.02 5.77 -26.73 -0.15 -1.18 16 23 C -0.12 -0.84 5.92 -26.73 -0.16 -0.99 16 24 C -0.12 -0.79 5.03 -26.73 -0.13 -0.93 16 25 C -0.10 -0.78 2.51 -90.62 -0.23 -1.00 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 C -0.15 -1.20 9.04 37.16 0.34 -0.86 16 28 H 0.04 0.90 4.40 -51.93 -0.23 0.67 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.02 0.44 7.38 -51.93 -0.38 0.06 16 31 H 0.27 8.30 8.72 -40.82 -0.36 7.95 16 32 H 0.34 7.69 8.00 -39.29 -0.31 7.38 16 33 H 0.07 1.09 7.43 -51.93 -0.39 0.71 16 34 H 0.05 0.59 7.56 -51.93 -0.39 0.19 16 35 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 36 H 0.39 3.75 6.07 -40.82 -0.25 3.51 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.43 6.51 -51.93 -0.34 0.09 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.50 7.45 -51.93 -0.39 0.12 16 LS Contribution 353.64 15.07 5.33 5.33 Total: -1.00 -32.15 353.64 -8.05 -40.20 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.40 Total: 7.56 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.78 Total: -12.79 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.01 Total: -50.99 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -4.30 Total: 21.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.15 -8.05 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.961 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds