Wall clock time and date at job start Tue Mar 31 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47580 * 2 1 4 4 C 1.50705 * 109.47195 * 239.99905 * 2 1 3 5 5 H 1.07991 * 120.00525 * 245.37937 * 4 2 1 6 6 C 1.37880 * 119.99441 * 65.37724 * 4 2 1 7 7 N 1.31513 * 119.99742 * 185.16643 * 6 4 2 8 8 Si 1.86794 * 120.00168 * 5.16482 * 6 4 2 9 9 H 1.48496 * 109.47385 * 270.00050 * 8 6 4 10 10 H 1.48500 * 109.47377 * 30.00115 * 8 6 4 11 11 H 1.48503 * 109.46985 * 150.00184 * 8 6 4 12 12 N 1.46900 * 109.47254 * 120.00520 * 2 1 3 13 13 C 1.46906 * 110.99762 * 274.99622 * 12 2 1 14 14 H 1.08997 * 109.47021 * 35.00299 * 13 12 2 15 15 C 1.52998 * 109.47091 * 274.99979 * 13 12 2 16 16 C 1.50700 * 109.46758 * 154.99864 * 13 12 2 17 17 O 1.21279 * 120.00459 * 0.02562 * 16 13 12 18 18 N 1.34775 * 119.99576 * 179.97438 * 16 13 12 19 19 C 1.46507 * 120.00080 * 180.02562 * 18 16 13 20 20 H 1.09006 * 109.46830 * 325.00535 * 19 18 16 21 21 C 1.52995 * 109.46873 * 85.00106 * 19 18 16 22 22 C 1.53001 * 109.47442 * 60.00222 * 21 19 18 23 23 C 1.53004 * 109.46743 * 59.99834 * 22 21 19 24 24 C 1.53003 * 109.47238 * 300.00017 * 23 22 21 25 25 C 1.52994 * 109.47300 * 205.00043 * 19 18 16 26 26 H 1.08998 * 109.47359 * 179.97438 * 25 19 18 27 27 C 1.53003 * 109.47057 * 59.99963 * 25 19 18 28 28 H 1.08995 * 109.46839 * 54.97773 * 1 2 3 29 29 H 1.09001 * 109.47403 * 174.98010 * 1 2 3 30 30 H 1.08999 * 109.46930 * 294.97352 * 1 2 3 31 31 H 0.96998 * 120.00440 * 354.99448 * 7 6 4 32 32 H 1.00900 * 111.00306 * 151.04811 * 12 2 1 33 33 H 1.08998 * 109.47398 * 59.99750 * 15 13 12 34 34 H 1.09000 * 109.47012 * 179.97438 * 15 13 12 35 35 H 1.09005 * 109.47320 * 299.99760 * 15 13 12 36 36 H 0.97001 * 120.00112 * 0.02562 * 18 16 13 37 37 H 1.09007 * 109.46893 * 180.02562 * 21 19 18 38 38 H 1.09004 * 109.47506 * 299.99905 * 21 19 18 39 39 H 1.09002 * 109.47330 * 300.00282 * 22 21 19 40 40 H 1.09001 * 109.47322 * 179.97438 * 22 21 19 41 41 H 1.09003 * 109.46732 * 180.02562 * 23 22 21 42 42 H 1.08990 * 109.47116 * 60.00460 * 23 22 21 43 43 H 1.08998 * 109.46835 * 300.00409 * 24 23 22 44 44 H 1.08993 * 109.47116 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.47048 * 60.00119 * 27 25 19 46 46 H 1.09002 * 109.47047 * 179.97438 * 27 25 19 47 47 H 1.09003 * 109.47515 * 300.00268 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6363 -1.1339 6 6 1.7930 -0.1782 -2.4797 7 7 2.1412 -0.8471 -3.5571 8 14 0.9742 1.4929 -2.6418 9 1 -0.4990 1.3181 -2.7072 10 1 1.3215 2.3305 -1.4657 11 1 1.4492 2.1587 -3.8813 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2577 0.9328 2.2908 15 6 3.4112 0.9807 2.3223 16 6 1.9787 -0.5679 3.6258 17 8 1.8641 -1.7745 3.5854 18 7 2.0142 0.0663 4.8145 19 6 1.9137 -0.7020 6.0579 20 1 1.2434 -1.5485 5.9088 21 6 3.3001 -1.2131 6.4549 22 6 4.2411 -0.0251 6.6641 23 6 3.6909 0.8718 7.7749 24 6 2.3045 1.3830 7.3779 25 6 1.3636 0.1949 7.1686 26 1 1.2885 -0.3768 8.0936 27 6 -0.0228 0.7061 6.7716 28 1 -0.3633 0.5898 -0.8416 29 1 -0.3634 -1.0237 -0.0899 30 1 -0.3633 0.4339 0.9316 31 1 2.6310 -1.6802 -3.4737 32 1 2.9173 -1.1206 1.0287 33 1 3.4863 1.5523 1.3973 34 1 3.4576 1.6600 3.1735 35 1 4.2361 0.2704 2.3785 36 1 2.1062 1.0314 4.8468 37 1 3.2253 -1.7852 7.3798 38 1 3.6921 -1.8522 5.6636 39 1 4.3158 0.5467 5.7391 40 1 5.2287 -0.3892 6.9474 41 1 4.3611 1.7185 7.9237 42 1 3.6163 0.3002 8.6999 43 1 2.3793 1.9546 6.4528 44 1 1.9127 2.0223 8.1690 45 1 -0.6932 -0.1404 6.6226 46 1 -0.4149 1.3447 7.5632 47 1 0.0518 1.2777 5.8465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:17 Heat of formation + Delta-G solvation = -85.582368 kcal Electronic energy + Delta-G solvation = -23630.474199 eV Core-core repulsion = 20424.928954 eV Total energy + Delta-G solvation = -3205.545245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40384 -39.44618 -37.77311 -35.04744 -34.56703 -33.45435 -32.67370 -30.78056 -28.94409 -27.19548 -26.84612 -25.13847 -23.40785 -22.35699 -21.83744 -21.15485 -19.96151 -19.79735 -18.11416 -17.07120 -16.74772 -16.31266 -15.97060 -15.75783 -15.37594 -15.12473 -14.87832 -14.69012 -14.40533 -14.31554 -14.19440 -13.69454 -13.62106 -13.38849 -13.13084 -12.91050 -12.85938 -12.82871 -12.63893 -12.54332 -12.39318 -12.20250 -11.88140 -11.79993 -11.59188 -11.39706 -11.22326 -10.90729 -10.83138 -10.75563 -10.56339 -9.92561 -9.13868 -8.73370 -6.41548 1.43709 1.53424 1.70376 1.76735 2.20835 2.48340 3.08539 3.48668 3.66335 3.82151 3.84501 3.90315 4.11693 4.15508 4.19373 4.24681 4.49716 4.54093 4.54934 4.56893 4.62777 4.69615 4.72290 4.75191 4.78613 4.86519 4.92585 4.97860 5.00885 5.07849 5.15356 5.16580 5.19362 5.30490 5.34241 5.39991 5.45173 5.53818 5.57020 5.68206 5.72825 5.98326 6.24436 6.51970 6.70763 6.76283 7.39926 7.42405 8.63904 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.003850 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.343803 B = 7270.403712 C = 7431.484954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.188 3.812 3 H 0.016 0.984 4 C -0.598 4.598 5 H 0.017 0.983 6 C -0.025 4.025 7 N -0.946 5.946 8 Si 1.096 2.904 9 H -0.265 1.265 10 H -0.243 1.243 11 H -0.292 1.292 12 N -0.673 5.673 13 C 0.062 3.938 14 H 0.110 0.890 15 C -0.167 4.167 16 C 0.521 3.479 17 O -0.570 6.570 18 N -0.707 5.707 19 C 0.150 3.850 20 H 0.057 0.943 21 C -0.128 4.128 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.089 4.089 26 H 0.092 0.908 27 C -0.148 4.148 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.250 0.750 32 H 0.333 0.667 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.409 0.591 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 11.116 27.229 29.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.079 3.921 3 H 0.033 0.967 4 C -0.636 4.636 5 H 0.035 0.965 6 C -0.222 4.222 7 N -0.582 5.582 8 Si 0.917 3.083 9 H -0.190 1.190 10 H -0.167 1.167 11 H -0.219 1.219 12 N -0.304 5.304 13 C -0.051 4.051 14 H 0.128 0.872 15 C -0.226 4.226 16 C 0.307 3.693 17 O -0.448 6.448 18 N -0.361 5.361 19 C 0.046 3.954 20 H 0.075 0.925 21 C -0.167 4.167 22 C -0.153 4.153 23 C -0.152 4.152 24 C -0.150 4.150 25 C -0.108 4.108 26 H 0.111 0.889 27 C -0.205 4.205 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.151 0.849 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.779 11.058 26.287 28.529 hybrid contribution 1.651 -1.374 0.103 2.150 sum 0.872 9.683 26.390 28.124 Atomic orbital electron populations 1.21963 0.97400 1.00210 0.99502 1.19472 0.92667 0.92863 0.87087 0.96657 1.22390 1.38726 1.08833 0.93629 0.96509 1.27317 0.96611 1.06772 0.91509 1.70934 1.38817 1.16923 1.31550 0.83403 0.76547 0.71519 0.76784 1.19041 1.16728 1.21902 1.60144 1.33178 1.32514 1.04549 1.21618 1.00251 0.93635 0.89637 0.87182 1.22359 0.95588 1.00703 1.03906 1.20863 0.74848 0.87902 0.85675 1.90654 1.49743 1.16586 1.87778 1.45949 1.74579 1.11191 1.04407 1.20948 0.96498 0.94309 0.83679 0.92521 1.21871 0.95464 0.98322 1.01002 1.21483 0.98159 0.96242 0.99448 1.21526 0.96439 0.99281 0.97964 1.21612 0.94521 0.96662 1.02250 1.21372 0.95265 0.96864 0.97307 0.88943 1.21828 0.95673 1.01050 1.01947 0.93660 0.94871 0.92577 0.94126 0.84935 0.91953 0.88624 0.93039 0.75310 0.90182 0.94701 0.92459 0.91991 0.90881 0.91319 0.91769 0.89956 0.93868 0.90830 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 9.01 71.98 0.65 -5.16 16 2 C 0.19 8.86 1.99 44.17 0.09 8.95 16 3 H 0.02 0.71 5.62 -2.39 -0.01 0.69 16 4 C -0.60 -34.76 8.92 25.60 0.23 -34.53 16 5 H 0.02 1.09 7.90 -2.92 -0.02 1.07 16 6 C -0.03 -1.48 5.43 84.66 0.46 -1.02 16 7 N -0.95 -60.64 13.70 21.45 0.29 -60.35 16 8 Si 1.10 49.83 25.29 68.60 1.73 51.56 16 9 H -0.26 -11.25 6.81 99.48 0.68 -10.57 16 10 H -0.24 -9.52 6.36 99.48 0.63 -8.89 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 N -0.67 -29.27 5.54 -477.15 -2.64 -31.91 16 13 C 0.06 2.00 2.79 44.17 0.12 2.12 16 14 H 0.11 3.19 7.10 -2.39 -0.02 3.17 16 15 C -0.17 -4.32 9.04 71.98 0.65 -3.67 16 16 C 0.52 16.61 7.19 87.66 0.63 17.24 16 17 O -0.57 -24.13 16.09 -3.03 -0.05 -24.18 16 18 N -0.71 -15.27 3.43 -442.53 -1.52 -16.79 16 19 C 0.15 3.04 2.23 44.99 0.10 3.14 16 20 H 0.06 1.50 7.58 -2.38 -0.02 1.48 16 21 C -0.13 -2.51 5.60 30.59 0.17 -2.34 16 22 C -0.12 -1.74 5.77 30.60 0.18 -1.57 16 23 C -0.11 -1.18 5.92 30.60 0.18 -1.00 16 24 C -0.11 -1.09 5.03 30.59 0.15 -0.94 16 25 C -0.09 -1.16 2.51 -10.80 -0.03 -1.19 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 C -0.15 -1.99 9.04 71.98 0.65 -1.34 16 28 H 0.04 1.91 4.40 -2.39 -0.01 1.90 16 29 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 2.05 7.38 -2.39 -0.02 2.03 16 31 H 0.25 16.39 8.72 -92.71 -0.81 15.58 16 32 H 0.33 15.49 8.00 -89.69 -0.72 14.77 16 33 H 0.06 1.76 7.43 -2.39 -0.02 1.74 16 34 H 0.10 1.67 7.56 -2.39 -0.02 1.65 16 35 H 0.05 1.43 8.13 -2.38 -0.02 1.41 16 36 H 0.41 6.43 6.07 -92.71 -0.56 5.87 16 37 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.93 7.60 -2.39 -0.02 0.92 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 0.60 6.51 -2.39 -0.02 0.58 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 0.77 7.45 -2.39 -0.02 0.75 16 Total: -1.00 -74.08 353.64 1.58 -72.50 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.47 Total: 30.48 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 4.24 Total: -21.31 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -3.87 Total: -109.04 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.73 Total: 51.56 kcal Total: -74.08 1.58 -72.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.081 kcal (2) G-P(sol) polarization free energy of solvation -74.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds